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mmu_ciZfp207_439
Basic information of circular RNA
PanCircBase ID:
mmu_ciZfp207_439
mm39_Chr. Position ID:
chr11|80280156|80280595|+
Gene name:
Zfp207
Transcript:
ENSMUST00000165565.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
5
Exon/intron offsets:
0
Genomic length:
439
Exon/intron sizes in nt:
439
Flanking exon/introns:
chr11:80280156-80282156
Splice length:
439
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGCAAACTGCCAGTTGGGTTGTGGGCTTGGGCCTTTCTTAACTTGGGTGATATGATTTAAATCTTTTTTTTTTTTTTTTTTTTTGCTTCTCAAAGATATGGGCTCTATAAATCTTAAACTTTTATTTCTAATAAGGGGTCAGTAAATATAAGACATATTTTCCTCTAAGGAAAATAGATTTTTGGGTAGTAGAATGAATGTAGGAAACCGTCTATTTCAGTTGCATTTGCTGTAATTAAAGTATTGATTATAGATTTGAGTTTCTTAGTTATGGAAAAGGGAATTGTAATGATTTACCAAAGCATCAGAAACTAAAATGAAATTGAGGTGCGTATTGCCCATCACTTTTACTTAGTTGGATATGAAAGGTGTACAGTACACTTTCCCGCTGTATTCTGAAAATCACAGTTAGATTTTGATTTTGTCATACATTTTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCCCATCACTTTTACTTAGTTGGA
58.99
ACCCAAGTTAAGAAAGGCCCA
59.5
151
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCCCATCACTTTTACTTAGTTGG
57.69
ACCCAAGTTAAGAAAGGCCCA
59.5
151
PCR template sequence:
GCCCATCACTTTTACTTAGTTGGATATGAAAGGTGTACAGTACACTTTCCCGCTGTATTCTGAAAATCACAGTTAGATTTTGATTTTGTCATACATTTTCGTAAGCAAACTGCCAGTTGGGTTGTGGGCTTGGGCCTTTCTTAACTTGGGTGATATGATTTAAATCTTTTTTTTTTTTTTTTTTTTTGCTTCTCAAAGAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-181b-5p(1), mmu-miR-190b-5p(1), mmu-miR-544-5p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GTCATACATTTTCGTAAGCAAACTGC
siRNA sets
TTTGCTTACGAAAATGTAT, TTGCTTACGAAAATGTATG, AGTTTGCTTACGAAAATGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.929901889
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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