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mmu_ciZfp142_1178
Basic information of circular RNA
PanCircBase ID:
mmu_ciZfp142_1178
mm39_Chr. Position ID:
chr1|74606531|74607709|-
Gene name:
Zfp142
Transcript:
ENSMUST00000113737.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
8
Exon/intron offsets:
0
Genomic length:
1178
Exon/intron sizes in nt:
1178
Flanking exon/introns:
chr1:74606506-74607709
Splice length:
1178
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTGAGTGCATGAGTTGACTGTCCTGCTTAAAGGGTCCCCCGTTCTCTGGAAAACCTGACCTCCCTGAGACGTTTGTTGGGTGTCCTCACTCAGATTCAGAGCCTAGTTTTCTTTCACACTGGGAATAGGGGATATACTAGAAGAACAAATACTAGAAATGGCTCCTCAGCCTATTGAATAGAATCCAAAGAGTTTTACTTGAAAGCCTGGGCAAGTGTATTTGCGAAGCTTCCCCTGTGATTATGTTACACATTCACACATATATAGGGTCACACAGGGAGAACCTTCAACCTCAATTTTCAGTAACTACTGAGAGATACTTGGTTCTCTGTAGATGTGGTAGAATGATTGTGAGTGAGAAGAAAGATGATCTTAAGATACATTTTTTTATATGCACTGGTGTTTTGACTGCATGTATGTGTGAGGGTGCCAAATCCCCTAGAACTGGAGTTATACACAGTTGTGAGCTACATATGGGTGCTGGGAATTGAACCCCGACTCCTCTGGAAAAGCAGCCAGTGCTCTTAACCCCAGTCATCTTTCTAGCCCCAAGTTTGGCTTTTGCTCTCTAGCATATGGAATCCACTACAGAGAACTATAGGTTCTCTGTAAAAGATTGATGACTGGGTACCTTCAATTGTGGCATGTCATTGCCCCATATGGGAGTATCTTTACCTCTTCCTTTTTTGAATATTTTTTTCTTTATTTAGTTTGATAAAAAAGTGTGTCTAAAAGGAGTTTTTTTTTTTTTTAAAGATTTATTTATTTATTATGAATACACTATAGCCATCTTCAGACACATCAGAATAGGGCATCAGATTCCATTGCAGATGGTTGTGAGCCACCATGTGGTTGCTAGGAATTGAACTCAGGACCTCTGGACAAGCAGCCAGTGTAGTGTCATATGACCAAGAGAGGGTTAGAGTTTCCCATTTAATACCCATCATAGTTGAGTATTCTTTACTGTTAGGTAGGCTAGTTACTTAGAAGTCCAGTTAGTTGTCAGCATCCATTGGAATCTGTATGTATAGTATACAAGGACTGAGTGGAGAAGGATATCAGTATGTCAGGTGTGCCTGGGACAGAACGGTATGGCCATTAGCTTGCTGCTGTGTTATTTATATCTAAGTATCATGCTGACTTAAGACTCATTGACCCTGTTCTTCCCTCTTCC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGACAGAACGGTATGGCCAT
59.82
CCCAACAAACGTCTCAGGGA
59.89
179
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGACAGAACGGTATGGCCAT
59.82
ACCCAACAAACGTCTCAGGG
60.18
180
PCR template sequence:
GCCTGGGACAGAACGGTATGGCCATTAGCTTGCTGCTGTGTTATTTATATCTAAGTATCATGCTGACTTAAGACTCATTGACCCTGTTCTTCCCTCTTCCGTGAGTGAGTGCATGAGTTGACTGTCCTGCTTAAAGGGTCCCCCGTTCTCTGGAAAACCTGACCTCCCTGAGACGTTTGTTGGGTGTCCTCACTCAGATT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
22
Interacting miRNAs (#binding sites)
mmu-miR-466d-3p(2), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-148a-3p(1), mmu-miR-96-5p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-511-3p(1), mmu-miR-425-5p(1), mmu-miR-297a-5p(1), mmu-miR-384-3p(1), mmu-miR-342-3p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-207(1), mmu-miR-669d-5p(1), mmu-miR-466b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TCTTCCCTCTTCCGTGAGTGAGTGCA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.871895026
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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