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mmu_ciZc3h7a_663
Basic information of circular RNA
PanCircBase ID:
mmu_ciZc3h7a_663
mm39_Chr. Position ID:
chr16|10966411|10967074|-
Gene name:
Zc3h7a
Transcript:
ENSMUST00000037633.16
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
14
Exon/intron offsets:
0
Genomic length:
663
Exon/intron sizes in nt:
663
Flanking exon/introns:
chr16:10966409-10967074
Splice length:
663
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGATTTCTCCACAATTCATTTTCTGCTGTCAAATTTGGTGAGAGTGGTGGAGAGTGTAACTCACTGAGGAGCCTAGTATGCATGGAGGCCTCAGCACTGAATTAAAAATATGGTTGGGGTCCATAGCATGTGTCTGTAGCCCCAGCACTTGGGAGGCAGAAGCAGACAGAGCTCTCTGAGTTCCAGGCCAGCCTGGTCTATATAGTGAGCTCCAGGCTAGCTAAGGCTACTTTTCTCATCAAAAATCAAATTGAAAGAAAGTGTGTTCAGGCATGGTGGACACACCCTTAACCCAGCACTCTTGGGAAGTAAAGGCAGGTCCATCTCTCCAAGGTTTAAGCCAGTGGCTACTCCTACTCTTTGAAAGAATGAGAGAAAGCTGGTCCTGGTGGTACATGCCTACAATACCAGTACTCAGAAGTCTGAGGCAGGAGCATCACTCTTAAGTTCAAAGCAAGTGTGGTGGGCTATAGAGATCATGCCTGAAATCAAGCAGAGCAGCGTGTATAGTAGTAAGGTTCCTGCTGAGTAAGTTCCTGCTTATAATTGGTACAAATTATTCATTATAAATGTATAAAGATACTGAAGCTAAGGCAGTATTCTGGGCACAAAACTTAGACTTGTGTATATTTGTGTGATAATCCTTCCTTTCTTTCTATTTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGGCAGTATTCTGGGCACAA
59.3
CTGAGGCCTCCATGCATACT
59.24
166
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGGCAGTATTCTGGGCACA
59.3
CTGAGGCCTCCATGCATACT
59.24
167
PCR template sequence:
ATTATAAATGTATAAAGATACTGAAGCTAAGGCAGTATTCTGGGCACAAAACTTAGACTTGTGTATATTTGTGTGATAATCCTTCCTTTCTTTCTATTTCGTGATTTCTCCACAATTCATTTTCTGCTGTCAAATTTGGTGAGAGTGGTGGAGAGTGTAACTCACTGAGGAGCCTAGTATGCATGGAGGCCTCAGCACTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-miR-200c-3p(1), mmu-miR-185-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-377-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTCTTTCTATTTCGTGATTTCTCCAC
siRNA sets
AATCACGAAATAGAAAGAA, AAATCACGAAATAGAAAGA, GAAATCACGAAATAGAAAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.730463857
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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