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mmu_ciYeats2_1356
Basic information of circular RNA
PanCircBase ID:
mmu_ciYeats2_1356
mm39_Chr. Position ID:
chr16|20024995|20026351|+
Gene name:
Yeats2
Transcript:
ENSMUST00000090052.11
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
16
Exon/intron offsets:
0
Genomic length:
1356
Exon/intron sizes in nt:
1356
Flanking exon/introns:
chr16:20024995-20026373
Splice length:
1356
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTTAGTGCATCATTCCATCGTTCAGTCCCTGGGTCTCTACGTGGGTCCGTCTTGTCCAGCTGAGGGCCATCCTTTCCTGAGCCAGGAAGTGTTTCTGTAATTCTGCTTGATTGTGTAATGGAAGAATTTGCCCAAGTGGATTTATATATATTTTAAGTAGTCAGTGGGTTTAAATATTATCATAGTCTTAGGTAGTGACACTGTTATGTGGGGCATTCTGGGAAGGGTCCATTTACTGGAGGGTTGTTTTCTTCTGACGCAGATGTGCTGGCATAGTCTCTGTGACTAGTTTTTGGTTGTATTACTAGGTTTGGAGTTGAAATGAGAATTCCAGGTTCAGTCTAAGTATGTGTCTTAAAGCCCCAAGGACACTATGTAGTTTATTTAGTTACATAAAGCTTTTGCTTTGACAGGTGTGGGTGATGTCGAAAATATAGATTTCCCTCTGAATTGAAGTATAGGAGCCAGGCTTGTTAGAAATGACGTCCCTTGGCTGTTGACAGACTACCTCAGATATGCGCAATCTCATCAGGACTGGCAATGCTTAGATGGAGAAGTGACTGACCCTTGCCCAGTACGTTGTTAAGCCACTTAACATTTCTATAATGGCTTGTTGCCGCTTACTCTATTTTCCTCACACCTAAATAGCACAGTGTCAAAAAGATTTGTAAGGAAGGGCCAGCCTCCATATTCTGTGTGAGAGCAGACAGCATCTCTGGTCTCCACCTTCCTCAGGGTCAGAGGCTGTTGAAGGATTGTGCTTGCTGTAATCAAGGTGGCAAAACTTGTTAAATGTATGCTTACTACAGACCACGTAGCTCACTACCATGGAAGGAAAGGGGGAAGGCTTTGATCTGAAAAGAATTGAGAACTTGGAGCCAGAGATGGTTAATTTGATTTAAAAATGTTGTCTAGAAAATATTAGCATCAGATTTTCATCTTCAGTCAAAGTACTGTCAAAAATCTTCATTGGTACTCAGAGTGGAGGTATAGTCAGCTACCAGTCTCTTTAAAAGTACTAGTCAAGTGTCCTGTTATCTAGAATGCTTGAGACCAGGCATTGATTGCAGTTTTTTAGAATTTGGAATTTTTATAGAGACTTTATCAAGTATAGTCCGAAAAATCTAAAATGCTCCATAATCTAGAACTTTGATGTTACTTCAGTATCCAAAATGCTTTGAATTTAAGATTTCCAGACTGTACATGCTGAAAGTCTAAGCAGATTCAGTCTCCGTCTTTAAACTCTGGGGAGTTTTCCTCACTCGTCATCGATGAGCAGGACATGGAGGAACGGTAGTGTGGGCGAAGCATCTGCGCTCATCTGCTTTTCCTGTTGAGCTACTTCCTGTGATGCTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGTCATCGATGAGCAGGACA
59.9
CTCAGCTGGACAAGACGGAC
60.39
157
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CGATGAGCAGGACATGGAGG
60.25
CTCAGCTGGACAAGACGGAC
60.39
151
PCR template sequence:
CCTCACTCGTCATCGATGAGCAGGACATGGAGGAACGGTAGTGTGGGCGAAGCATCTGCGCTCATCTGCTTTTCCTGTTGAGCTACTTCCTGTGATGCTCGTTAGTGCATCATTCCATCGTTCAGTCCCTGGGTCTCTACGTGGGTCCGTCTTGTCCAGCTGAGGGCCATCCTTTCCTGAGCCAGGAAGTGTTTCTGTAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
16
Interacting miRNAs (#binding sites)
mmu-miR-149-5p(2), mmu-let-7a-5p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-miR-101a-3p(1), mmu-let-7c-5p(1), mmu-let-7d-5p(1), mmu-miR-351-5p(1), mmu-miR-411-3p(1), mmu-miR-98-5p(1), mmu-miR-499-5p(1), mmu-miR-342-3p(1), mmu-miR-3470b(1), mmu-miR-490-3p(1), mmu-miR-3105-3p(1), mmu-miR-323-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TCCTGTGATGCTCGTTAGTGCATCAT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.833220534
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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