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mmu_ciWdr90_237
Basic information of circular RNA
PanCircBase ID:
mmu_ciWdr90_237
mm39_Chr. Position ID:
chr17|26079108|26079345|-
Gene name:
Wdr90
Transcript:
ENSMUST00000177170.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
237
Exon/intron sizes in nt:
237
Flanking exon/introns:
chr17:26079107-26079345
Splice length:
237
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGGCCCACACTTCATGCCCCATCCCAGTCAGAAGGCTAGAACCCTCCCGCTAGCTGGCAGATAAGAACCACTTACCAATTTCAGAGGAGAGCCATGCACCAGGGCTCCCAGCTCCAGGAAGAGCATTGGGGTGGGTTGGTTGGTGGAGTGGCAGATACTTGGTAATGCATGTTGCCTGGGGTGGGAAGGGATAGGACAAATGTCCCTTGATCTAGAACAGTCCTGCTCATTGTA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TAATGCATGTTGCCTGGGGT
59.96
CTTATCTGCCAGCTAGCGGG
60.32
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TAATGCATGTTGCCTGGGGT
59.96
TCTTATCTGCCAGCTAGCGG
59.32
141
PCR template sequence:
GTTGGTTGGTGGAGTGGCAGATACTTGGTAATGCATGTTGCCTGGGGTGGGAAGGGATAGGACAAATGTCCCTTGATCTAGAACAGTCCTGCTCATTGTAGTGAGGCCCACACTTCATGCCCCATCCCAGTCAGAAGGCTAGAACCCTCCCGCTAGCTGGCAGATAAGAACCACTTACCAATTTCAGAGGAGAGCCATGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-204-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CCTGCTCATTGTAGTGAGGCCCACAC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.493661613
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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