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mmu_ciUty_919
Basic information of circular RNA
PanCircBase ID:
mmu_ciUty_919
mm39_Chr. Position ID:
chrY|1175571|1176490|-
Gene name:
Uty
Transcript:
ENSMUST00000143286.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
8
Exon/intron offsets:
0
Genomic length:
919
Exon/intron sizes in nt:
919
Flanking exon/introns:
chrY:1174854-1176490
Splice length:
919
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTACATAGAAACTTCATTTTCATTGTGTATCCTATTTAATTTATAAAGTTATAATTAGTCTTATAAAGTATTCTTTGCTGAGGAGTTTATTTGCTTTTAGATATCTGTGTTGTAGAATTAAATGTAGCAGGGATATGTTCTTTTACTTATTAATACTTCCCCTGCATTTGTTTGGAACTAGTGTACTTTTTATTTTCAAGAAGTTTTATGGTCTTAAAATATAGACAAAAGAAAGTTTTCATTCAGTTTGAACAGGTTGTTTAAAAGTTTTAGCTGATCTGCTATTGATATTAATCTTTTTTATGTTACTATTGATAGGTTTCTTCAATATAAATAAAAACATTCTTTTGTTTGAGTTGTATTTTGATTAAAGATATACTGTATTGAGTTGAGTCAAAACTGAAAATACTTCTTTTACCTGAATGTTTGTTGTACCTTAATCTTTTATCTTTTTTACTGTAGTTTTTAAGTATTATTATGAAGGGATTATTTGTTGTATCCTGAATGCCACTTTTATGGGTTTTTTCTGTATCTGCAGGTTTTATGAACTATACTATATAACCTGAAAGTTTGTTTTTTTTGTTCTTGTTTTATCAAATATTGTTCTATTTAGTGTACATGAAAAAGTAGCTAGTGACCATAAAATGTTGGGCCTTTTCTATGTTTTTTAAAGCTTAATTTAAACAAATCCCATTTATGGTACATGCTTTTTTAAGAAAACATTTCATTGTTGTGAGTAGGTAATGTACATATGTGTTCATGTGCCTCTTACAGTGCACATGTGGTCAAAGAAGAACTTTGTAGAGTTCTGTTCTTTTACTTTTACATGGTACTAAAATTGTACTCCCTCTCTTTTTCCTGGTGCTAGGGTTTTAATTTAGGGCCTCACACATAAAATGCAACTGCCCTAACAATGAGT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCCCTCTCTTTTTCCTGGTGC
59.93
AGCAAATAAACTCCTCAGCAAAGA
58.93
170
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCCTCTCTTTTTCCTGGTGCT
59.93
AGCAAATAAACTCCTCAGCAAAGA
58.93
169
PCR template sequence:
CTTTTACATGGTACTAAAATTGTACTCCCTCTCTTTTTCCTGGTGCTAGGGTTTTAATTTAGGGCCTCACACATAAAATGCAACTGCCCTAACAATGAGTGTACATAGAAACTTCATTTTCATTGTGTATCCTATTTAATTTATAAAGTTATAATTAGTCTTATAAAGTATTCTTTGCTGAGGAGTTTATTTGCTTTTAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-335-5p(1), mmu-miR-222-3p(1), mmu-miR-203-3p(1), mmu-miR-495-3p(1), mmu-miR-3065-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CCTAACAATGAGTGTACATAGAAACT
siRNA sets
TATGTACACTCATTGTTAG, TTTCTATGTACACTCATTG, TTCTATGTACACTCATTGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.975165116
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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