top of page
mmu_ciUbap2l_755
Basic information of circular RNA
PanCircBase ID:
mmu_ciUbap2l_755
mm39_Chr. Position ID:
chr3|89909796|89910551|-
Gene name:
Ubap2l
Transcript:
ENSMUST00000198322.5
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
25
Exon/intron offsets:
0
Genomic length:
755
Exon/intron sizes in nt:
755
Flanking exon/introns:
chr3:89909780-89910551
Splice length:
755
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGGTATCTGGTCTGGATGAAAGTAGAAAGAGATGGATGAACATAGAACAGTTGGATTTGAAGTTAGAACAACCCTCAGGAATGCTGTCAAGAACCTGTCCTACCTTTTCTAAAATGAATTGTCTCTAGGCTTCTGTTTCATTCTTTCTAAATCCATAACCAAAAGTGGGAATGAAGTGAAGTGTTTGTTATTGAGTTATTTACAGATATATCTGTTGTCTGTCCTTTTTCTGTCCCAATAAGATCTTCGTTTTTTTTCTAAAATATCTAAGGAGTTTGAATTTGTGCTAAACTACAGAGGCAGGAATGCTCAGACTAGTCAGCACATTTCTCTATCTTCTTATGAAATTACTTTTACTTATTTATTTTGAAGAAGGGTTTCATTTTGTAGTCCTAGCTGACCTGGAACTCATTGTGTAGACCAGACTAGTTTCAAACTCCAAAGATCCACCTGCTTCCCAAGTAATTGGGATTAAAGGTATACACCATCATGCCTGGCCAATGTAAGACTTCATGGCGTGCTCTAACAGTCATCTCCCTGCTCGATCCTTACGACAAGAGTTCAGCAATATTTCTTTTATTTGTGAGGAAACTGAGGTTGAGTAGTTAATTTGCCTAGGATCACGGAGCTATGAAAAGACAGAGCTAGAACTAAGACTTCTGAATATTTGACTTGAGGTATGCTATTGCTTCTGAGGCCTCAGAAAGTCCTAGGATTCTTCTAATGATCATGTTTTACTGTCTTCCCTCCTGT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTATTGCTTCTGAGGCCT
59.09
ACAGCATTCCTGAGGGTTGT
59.23
162
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCTATTGCTTCTGAGGCCTCA
60.13
ACAGCATTCCTGAGGGTTGT
59.23
161
PCR template sequence:
AGACTTCTGAATATTTGACTTGAGGTATGCTATTGCTTCTGAGGCCTCAGAAAGTCCTAGGATTCTTCTAATGATCATGTTTTACTGTCTTCCCTCCTGTGTAGGTATCTGGTCTGGATGAAAGTAGAAAGAGATGGATGAACATAGAACAGTTGGATTTGAAGTTAGAACAACCCTCAGGAATGCTGTCAAGAACCTGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-7a-5p(1), mmu-miR-184-3p(1), mmu-miR-495-3p(1), mmu-miR-149-5p(1), mmu-miR-802-5p(1), mmu-miR-335-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TCTTCCCTCCTGTGTAGGTATCTGGT
siRNA sets
ATACCTACACAGGAGGGAA, AGATACCTACACAGGAGGG, GATACCTACACAGGAGGGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.883524047
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page