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mmu_ciTubgcp3_65
Basic information of circular RNA
PanCircBase ID:
mmu_ciTubgcp3_65
mm39_Chr. Position ID:
chr8|12690635|12690700|-
Gene name:
Tubgcp3
Transcript:
ENSMUST00000164774.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
12
Exon/intron offsets:
0
Genomic length:
65
Exon/intron sizes in nt:
65
Flanking exon/introns:
chr8:12689715-12690700
Splice length:
65
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATGGCTCTTGTGGTGGTAACAGTGATGGGGTTGTGGTAGTGGTGATGGTAGGGATGGAAGTGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGTAGTGGTGATGGTAGGGA
59.64
CCCCATCACTGTTACCACCA
59.3
62
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTGGTAGTGGTGATGGTAGGG
59.51
CCCCATCACTGTTACCACCA
59.3
63
PCR template sequence:
TGTGGTAGTGGTGATGGTAGGGATGGAAGTGGGTATGGCTCTTGTGGTGGTAACAGTGATGGGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-335-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GGGATGGAAGTGGGTATGGCTCTTGT
siRNA sets
CCATACCCACTTCCATCCC,AAGAGCCATACCCACTTCC,CAAGAGCCATACCCACTTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.087288808
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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