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mmu_ciTtyh2_7264
Basic information of circular RNA
PanCircBase ID:
mmu_ciTtyh2_7264
mm39_Chr. Position ID:
chr11|114602664|114609928|+
Gene name:
Ttyh2
Transcript:
ENSMUST00000045779.6
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
13
Exon/intron offsets:
0
Genomic length:
7264
Exon/intron sizes in nt:
7264
Flanking exon/introns:
chr11:114602664-114609954
Splice length:
7264
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTATCCTTTTGTGGCCCGGTCCCTGTCGGGGACATAATCAAAGATAAAAGCTGTCAGTGCAATGTGTGGTCCCCACAGAGACGTGAAAGAATGTAATAGCTCTGTTACCAAATAAGTATCAGAGCAGACTGCCACACGTCACGGGCCATCCGCTACCCAGACCGTAAAGACGCCAATCGATCTCGCCCTGTTAGATGGCCTCTTGGGCATGGCCCATTGCACAACTGTCCTTGAGATAAATGGCCTCTGTCTTCAAGCTAGAGGACCAGGGACTGCATTTGTCACACTGGCACTTCATAAATCCACATGGTACTTAGCGTAGCCATGCTCGGTTGGCCATTGATTTAACTCAAGGGGAAAAACAAATTTCTCACATCACGTGACAGCCAGTAGGCTCCAGCTTAGAGCCAGGCACCTAAGCAGTCACAGGAGATTGTGGGACACACACACACACACACACACACACACACACACACACACACACACACACACACACGAGGACTGTCTGACTGTCTGGAATAATGACCTTTATACAGCCTTCAAGAAACTCTCCTGGGGCCAGAGATGTGGATTCAGGGATGTGGAGTCCCTGCCCAGCACCAAGTATAACTGGGTGTGGTGGTTTAAAGAAATTCTAGGTCACACAGAGCAAGTTCAAGACCTACTTCAAAAAAAATGAAAGAGAAAAATATTCTTCCTGCATTCTAAGAGTAGGAGGAAGTTGCCTTGGCATTGATTTGTTTGTTTGTTTCATGTGCATGGTGTTGTTGTTGTTGTTGTTGTGGTCGTCATTGTTTTGGTTGCTGGTATGTCTGTGCACCACAGGCGTGCCTGGCACCTGTGGAGGCCAGTGGAGGATATCGGATCGCCCTGGAACTGAAGTTACAGACATTGTAAACCATTATGTGGGTGCTAGGAATTGAACCCCGGTCCTCTCAAAGAGCATCCGGTGTTTTTAACCTCTGAGCCATTTCTCCAGCTCCTCTTCCACCTTTAAAACAGGTTAAGATTGAGCTAGCTCACTGGTGGGGCACTTGCCTAGCATGTCAGAGGCCCTGGGTTTGCCCCTCAGGAGAAGAGAGAGTCCTTTATAGCTAGTTTCCTAAAGAGGATAAATACAAGAGGAAAAGAGAGTCTCTTGTCCATCTGTCTGTCATTCCTGTCCATCCTAGTTTCCTTTCCACTGCCTTGATAAACAACAGGTAACATGGAGGGGAAGATCTTACTTGTCATCCAGTCCATCACTGAGGGAGCTCAAGGCAGAAACTGAAGCAGAGGCCACGGATGACCACTGCTCATTGGCTTGCACCCTTTAAACATTTATTTATTTATGTATATGAGTACACTGCCGCTGTCTTCAGACACACCAGAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGGAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCTTCAGCCTGCTTTCTTATACAACCCAGGACCACCTGCCCAGGGATGGCACCACACATAGTGGGCTGAGCCCTCCCATGGCAATCACCAGTCAAGAAACTGAGCCGGTCATGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAGAAAAAAAAAGAAGAAAAAGAAACTGGCCCACAGACATGCCCACAGGCAGTATGATGGAGTCATTTTCTCAACTGAGCTTCCCTCTTCTGAGATGGCTCCTACTAAAGTTGCCAGAAAACTAAATGTACTCTTCCCTTTCCAGATGTGTGTGTGTGTGTGGTTTGAGACACGGTGTTATATAGCTGAAGATGACCTTGAACTCCTGACCCTCCTGCCTCCACCTTCCAGGGAGCACTTAAGAGATTCCCTTGGATTCTGGTGCTAGGGGTTGAGCCAGGACCTTATGAGTTATTGCTAAGCTACCTAGCTAGATCCCTGGCTCCTCTCTTTATCATTTGTGTTTCCCCTCAGTCCTGGGACCTAACTGTAGCAGGTTGGCTTGGTGTTGTAGTGGCCTATCCAGGACAACTGCCACCAGTCACAGCCTTCCTCCACCACCCCAGCAAAACTCAAAGCCCCCAGGACCACGCCCATGTGAGGTCTGTGCCTCCAATCCTGGGTGGAGCCCAGGATGTGCTGGGTAGGTGGGAAATTGGAGAAACTGCCATACTGTCTGTTCCCAGGGTAGCATCCATAGAGCCCAGGATTATTGCTAAGGTAGGAACAGCCTGGACTTTGGTACCCACATACCTGGGTTCAAATCCCAGCTTATACCATGTGGCCTCTGTGACCTGGGACATGGCCTCTGCCTCTCTGGCCTCAGTTCTCCTGTATGTAGAATGGGGACGGTGAAGACACATGCCTGAGCACTGAAAGGGGTGGCTCATTAGAGCATTGTTTTGTTTTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCCGCCTCTGCCTCCCCAGTGCTGGGATTAAAGGCATGCGCCACCACGCCCGGCTTCATTAGATCATTATAAGAATGACCATATGCAGCATACAGGAAGTGCCACACATAGGCTGGTTCTCTTCCTTCTCTGTCTCTCTCTCTTTAAAAAATGTCACGGAGGTGTGGCATTCCTAAGAAGATGCCAGAGTGGAAGTCTCTGGGGAGAGTGGGTAGACTTCTTGTCCAGCGTCTGCTTCCATGGAGGCGTTCCATCTGCCCATCCCTGTAGTTTCAGGGGAACCACCAATACAATAGAAATGCTGGGTACCCTGGACCAGTGAGTGGAGCTGGGCCCTGGGAACCCAGCAAGTGCACAGATGGGCTGTAAGCAGCACCCTGGCCTGCCCACTGCAAAGCCTACTGCAACAAATCCTGATTTTCCATGCCACGATTCCCCTGGCGTTTTATCCCGAAAACCTTACTTGTGTTTCTTTCATTACTATTATTTTAAGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAGTATGTAGTGTGGGGGTACACACAGAGGACTAAGGGAGTCGTATTCCTTGGAACTGGGGTTACAAGCTTCCTGAAATGGATGCTAGGAGCTGAACTCGAGTCGTCTGGAAGAGCAGCAGATGCTCTTAATTGCTTTGCCATCTCCCCAGCCCCCTTATTATTATTTTTAAAACAGAGTTTCCCGTAGCCTGAGCTGACCTCTAACTCATAACTCACAGCTCACTGTAGAGCAGAGGCTGATTTTGAACTTCTGACACTCCCGCTTCTGTTTCCCATGAGCTGGGAAAGAGCATCACGGGCTGCCGTTCATGGACTAGTGAGTCGCAGGCTGCACCTTTAAAATCCTACCCTGCCTTCCCTGCTAATCAAAGCTTCCTAGATCCCTCTGCCTCCAGCTGCCAGGCCCCAGGGACCGACTTCATTATTAATCCAAGCCAAACACAATTTGGGAAAATCTGCTACTGTGACAAAGAAATTAATCACTATGCTGTGATTGTGAGTGAAAGCGATTTTTAGATTACCTTCTGCTGGAAACAGTCAGGCCACTCTCCCTGTCCTGAGGTAAACTGCAGCTGACCCTATTTACAAGGCTGGAAGACAGAAAAACCCTCATGGCTTTGGCAAAGGTGACTAACTACCAGCTACCTCCATCTTGGCCAACTCTGGGGGAAGATTCCCACCCTCTGCCCCTGCTAGGGACATCTGGAAAGATCGGTGCTGATGATGTCGTCATGGAAACAGGTGGGATGAGGGTGTGGGTGAATGAGAGGAAGCAAGGCCACTGAAGGGTCAGCCTGTTCCTTGGCCGGAAAAGTATCTTCCCTTGGCTCGGACTTCAGGGAATCTCTCTTGTGTTTCCAGACCCGTTCCTAGACACTAACAAAAATCGCTCAGGGTGTTGTGAAAATCCCTGAGTTGAAGGTCTTCTCTGGCCTTATTTTTGGTTAAGACGTCTTCCACGCCATAAAACAAGCATTATTGCCCTGAAAGAGATAGGAAAGTTTTATTTGGCTTTTCTTTGTTTGTGTTGGTACTGAGAACTAGAACTCAGGACCTCACACTCCAAGCTATATCCTTAGCCCCAAGAGACGGAAACTCTCTTGGAAAGCAGGAACAAGCGACAAAATGAGGCCTTCTCTTTTCAGAGTTCTTTCTTGTAAATGAAAAGTGACATTTTTTTTTCATCCTTTTGGAAAAAGAGGGACCATGTGATCACTCTTTTTAAAAACTGACCCATTTCAGAGGCTGTTCTCACTCTATGTGGAGCTGTCCATTTTGTGTGGCTCCATTTTGATTTTTCAGTCTGGCCCAGTGCAGGACTCAGGTTCAATTCCCAGTCCAAAGCAGTGGACCTTTGTCATGTTCCTGTAATAATGGCAGCACAGGGGTTCTCAGACTCACAGAAACAGACTTTCCCAGGGAAGCAGCCTGGAAGATTTACAGTCTAACAAACTTACCAGGCAAGTCTGGGGAACACTGCCTTCATTGGGAAGGTTTGGTACTTGTGTGTACCCCAGAATCTGTTAAAGGGCCTGAGGGATCTGACCTGGGCCCCAGGGGTTGGCATGTCTAGCCTATTCCTGGGCAAAGCTGCCTCTGCTGGCCTAGGAGTCAAACCAGAGAACCACCACTCTCAGGCTGCCTTGTTCCGAAGCCATAGAGCTTTGAGGGACAGGATGGTCCTGTATGTTGAAGCTGGCCCATGCATTGTGGGATGTTTACCTGGCTTCGTAGTATTCCATCCCCAATCCTCCTGCAGCTCTGACAACTGGATCATCATTCGATATCGTAGGTATATCTGACAGACTCTCATGCAGATGCACATGGCTACCTAAAGTGCCTCTTGCCCGCTTCCTCTCATCCTACCCTGAGGTGACCTCGACTTGGGAAATGTCCCTGGGGTGAGGAGACTCACTGGAGTCAGCGTCCATCAGCAGCCACAAGCTTGTTAGGAAATGCAGGGTCTTGCGGCTGGTGGGGTCAATGAATGGCTAAGAGCACTGGCTGCTGTTGCAGAGGCCTCAGGTTTAATTCTCAGCACCGACATGTAGCTCACAACCAGGAGTTCTGATGCCCTCTTCTGACCTTTGCAGGCCAGGAATAACATACATACATGCATGCAAAACATTCCGACACATAAAAGAAATCTAAAAACATTTTTTTAGAAGGAAATGTTAAGGGTCCCTGGTGCTTTGGGCACAGGAGGAGATAGAAGACTTCCTGAGTTTTCACCTGGGACAGTGGTTCTCAACTTGTGGGTCTCAACTCCTTCGGGTTAGCCTAGTAGGTATCATACATGTCAGATATTTACATTATGATTCCTAACAATAGCAACATTACAGTTACCAATTATCAACAAAAATAATGGTATGGTCGGGGGCCATCACAGCATAAGGAACTACATGTATTAAAGAGTCGAAGTTTTAGGAAGGTTGTGTGTGACTGGATCTGCTGATCTTGCGCACAGCTTCTTCGACTCTGGAATTGTCAAAGCAACACTTTAAAACTATTGGTGACACATTAAAAAAACTTGTTTTTTTTTTTTTGTTTTTTTTTTTTTGTTTGTTTTGTCTATCTTACCTCAAAACAGAAAAAGAAATCTTGATAGATGTGACCTGGTTGGGTTTTTTTTTTTTTTTTTAACTCCCTAGATATATAAAGACCCTGATAGAAAGGATGGTGCTGAATTTTTTTAGGTATTTTTCAAGTGGGAAAAGGGAGGCCAGGAGAAGTTAGAGGATGTCAGTCAGCCAGCCAGGCGGTGGCGGCGCAACCCTTTAATCCCAGCATTCAGCAGCAGAGGCAGGCAGATTTTTGTGAGTTCAAGGCCAACCTAGTCTGCAGAACGAGTTCTGGAACAGCTACACAGGGAAACCCAGTCTTGGAAAAACAAACAAAACAAAAGGAGACTCAGCCGAAGAAGCGACGGGGCTGATAAAGTGTAGAGAGTAGAGATAAGGACGGGGTAAGCATCCACTCAGTAAAGAAGCGTGAGAAGAAGCGAGGTGTGAACCCCTGGGGCTCGCTGGCCAGCCAGCCTCACCTATTGGGTAAGCTTCAGGCCAGTGAAACACCTTGTCTCAAAAAGCACAGACTAGGGGGCTGGAGAGATGGCTCAATGGTTAAGAACATTGAGTGCTCTTCCAAACGACCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATACACTCTTCTGGTGTCCGAAGACAGCTACAGTGTACTCATACATACATTAAAAAAAAAACTAATTAAACACCCCCCACCACCACCACACACACACACACACACACACATGGTAGATAGCAGCCACACACATAGGACACATACACCGGATTCAAAGCTGGCTTCTAGGATGTGTGTGACCTGTGCCCCTCAGTCTGCTGGCTGTTAACTACCTGCTCCAAACTTCCCTGGTACACCTGATACGGTCTAGCGCTAGGCCTCCTGAGAGCCTGGGTGTGGAGGAAGGAGGATCCCTGCTCTGGGTTTGCATGCTATGCTAGAGGCTAAAGATGGTGCCCCGGGGATGTGAGACTGGAGGCGTCAGTGGACACGAAACTTCCCAAGCCTCCCTGAGCTGTGTGATGGCTTGTGATAAAGTCACTGTCTGGCTGCCCTGCCTGGCCAGCTTGTCATCCTCTGAGAAGTTCCCAGCACGTTTGCTGGTCCCAGGAATCCCAAGAGTGCCACACTCTGAGGATGCTCCAGCTCGTTATGTGCAACGATGTGCTGCTGTTCTTCATGCACACATCCTCCTCTATGTTCAGGATCTCGGTTGGGTTCATTGCCCCTGGGTGTGGTGACAGGAACATACAACCCCAGTTCTCTGAAGGCTGAGACCCAAAGGTCCTTTTGAGTCGGAGTCCAGCCTGGCTACACAGGGAACCCTGGACTACAAAGTAAGACCCTGTCTAAATAGATAACAGAAACAAAAGAAGAAAACACACACACACAAGAACATAATGCAATACAGGCATTTTTTTTTAGTACCTTTGATCCAAAGTTAGTTGAATTTATGGGTGTGGAACCAGCTTACCGAGAGGGGAAAATGGGCTGTGTAATGTCAGGGTGACCAGGTAGCAAACTGTGCCCTCTTGAGA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTGTGGAACCAGCTTACCGA
59.97
CCACACATTGCACTGACAGC
60.04
154
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGTGGAACCAGCTTACCGAG
59.68
CCACACATTGCACTGACAGC
60.04
153
PCR template sequence:
AAGTTAGTTGAATTTATGGGTGTGGAACCAGCTTACCGAGAGGGGAAAATGGGCTGTGTAATGTCAGGGTGACCAGGTAGCAAACTGTGCCCTCTTGAGAGTAAGTATCCTTTTGTGGCCCGGTCCCTGTCGGGGACATAATCAAAGATAAAAGCTGTCAGTGCAATGTGTGGTCCCCACAGAGACGTGAAAGAATGTAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
79
Interacting miRNAs (#binding sites)
mmu-miR-1187(9), mmu-miR-574-5p(5), mmu-miR-709(4), mmu-miR-297a-5p(4), mmu-miR-466d-3p(4), mmu-miR-466a-5p(4), mmu-miR-466b-3p(4), mmu-miR-298-5p(3), mmu-miR-149-5p(3), mmu-miR-34b-5p(3), mmu-miR-466p-5p(3), mmu-miR-210-3p(2), mmu-miR-134-5p(2), mmu-miR-221-3p(2), mmu-miR-34c-5p(2), mmu-miR-34a-5p(2), mmu-miR-339-5p(2), mmu-miR-24-3p(2), mmu-miR-207(2), mmu-miR-669d-5p(2), mmu-miR-3087-3p(2), mmu-miR-3105-3p(2), mmu-miR-155-5p(1), mmu-let-7a-5p(1), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-20a-5p(1), mmu-miR-1a-3p(1), mmu-miR-206-3p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-miR-223-3p(1), mmu-miR-30e-5p(1), mmu-miR-122-5p(1), mmu-miR-205-5p(1), mmu-let-7c-5p(1), mmu-miR-211-5p(1), mmu-miR-15b-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-146a-5p(1), mmu-miR-30a-5p(1), mmu-miR-30c-5p(1), mmu-miR-18a-5p(1), mmu-miR-222-3p(1), mmu-miR-324-5p(1), mmu-miR-139-5p(1), mmu-miR-30d-5p(1), mmu-let-7d-5p(1), mmu-miR-30b-5p(1), mmu-miR-433-5p(1), mmu-miR-125a-5p(1), mmu-miR-382-3p(1), mmu-miR-192-5p(1), mmu-miR-215-5p(1), mmu-miR-98-5p(1), mmu-miR-27a-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-377-3p(1), mmu-miR-410-3p(1), mmu-miR-673-5p(1), mmu-miR-5101(1), mmu-miR-532-5p(1), mmu-miR-452-3p(1), mmu-miR-188-3p(1), mmu-miR-3470b(1), mmu-miR-670-5p(1), mmu-miR-697(1), mmu-miR-3061-5p(1), mmu-miR-193b-3p(1), mmu-miR-146b-5p(1), mmu-miR-323-3p(1), mmu-miR-344-3p(1), mmu-miR-338-3p(1), mmu-miR-7a-1-3p(1), mmu-miR-542-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGCCCTCTTGAGAGTAAGTATCCTTT
siRNA sets
ATACTTACTCTCAAGAGGG, TACTTACTCTCAAGAGGGC, AAGGATACTTACTCTCAAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.689441047
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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