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mmu_ciTtc19_830
Basic information of circular RNA
PanCircBase ID:
mmu_ciTtc19_830
mm39_Chr. Position ID:
chr11|62174995|62175825|+
Gene name:
Ttc19
Transcript:
ENSMUST00000050646.13
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
4
Exon/intron offsets:
0
Genomic length:
830
Exon/intron sizes in nt:
830
Flanking exon/introns:
chr11:62174995-62175828
Splice length:
830
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTCAATCGCTTTGTAACATCTGGAATTGGTAATGCCTCAAGGGAGCTGACTAAGGGGATGCTACTTCCTCAGAAAGGTCCTGAAAATGCAGTGGCAGAAGGTGCAGCTGTGTTTCTTTTTTTTTTTTTTTTTTTTAAAGATTTATTTATTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTACTGGGAATTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGCTCTTACCGCTGAGCCATCTGGCCAGCCCCAGCTGTGTTTCTTTTTAATTGATTAGCCCGCATGCATGCCAAAGACTGTTAGGCATCTCTATTCATGTTAAGATACGTCTTCATCTGCGTGAGTGAGCTGACTCACCTCTGGCCTACAAGAAGGGGGGAGAGATTAAAGTGCAGAGACATCCTTATAAAATGTCTTAAAGGGGTTGGTGATCTCTCTGCCTGTTAGTGTTAGACAGTACTTAAATCCATGCTATGATCCCTCACTGTAAGGAAGGTTGATTCAAAAATTGAGGGTACTTAGACAGCTTAATTGATGGGGTGTATATTAGGAGCAGTCTTCAGTCTGTCCCGTTGGTTGAGGTGACTGACCTGCTGAAGTTAGCTTTCACTCATCACGCAGAGGATGTGAGGACCTTGTCTTTTGGTCCCTTTATAAAAATATCTCAGTGCTGCACATGGGTACATGCATGCACGCACACACTCACACTAAATTGTTACCTAAATTAAGAGCCATATGTAGATGGTCTAAAGAAAATCTTTATGCTTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTACATGCATGCACGCACAC
60.79
GTCAGCTCCCTTGAGGCATT
60.03
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTACATGCATGCACGCACAC
60.79
GCATCCCCTTAGTCAGCTCC
59.89
153
PCR template sequence:
TGCTGCACATGGGTACATGCATGCACGCACACACTCACACTAAATTGTTACCTAAATTAAGAGCCATATGTAGATGGTCTAAAGAAAATCTTTATGCTTTGTAAGTCAATCGCTTTGTAACATCTGGAATTGGTAATGCCTCAAGGGAGCTGACTAAGGGGATGCTACTTCCTCAGAAAGGTCCTGAAAATGCAGTGGCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
13
Interacting miRNAs (#binding sites)
mmu-miR-141-3p(1), mmu-miR-135a-5p(1), mmu-miR-211-5p(1), mmu-miR-217-5p(1), mmu-miR-132-3p(1), mmu-miR-324-5p(1), mmu-miR-139-5p(1), mmu-miR-214-3p(1), mmu-miR-297a-5p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ATCTTTATGCTTTGTAAGTCAATCGC
siRNA sets
ATTGACTTACAAAGCATAA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.801260121
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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