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mmu_ciTrp53bp1_1470
Basic information of circular RNA
PanCircBase ID:
mmu_ciTrp53bp1_1470
mm39_Chr. Position ID:
chr2|121044677|121046147|-
Gene name:
Trp53bp1
Transcript:
ENSMUST00000110647.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
17
Exon/intron offsets:
0
Genomic length:
1470
Exon/intron sizes in nt:
1470
Flanking exon/introns:
chr2:121041903-121046147
Splice length:
1470
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGGGGGCAGCTGGGCGCCTCGGGCCCGCTACAGACTGCATTCTCTGAAGGTCTCAGTTCAGTGCTTCTCAAACAATTGTATGTTTTTAGTGGTGTGCGTGCCCATGCCACTTGGGGCTTGTGTGTGAAAGTCAGAAGACAACTTCAGGTGTTAGTCCTCAGGTAGTTTCCATTTTTTTTTTTTTTTTTTGTTTGTTTGTTTGTTTGAAACAGGACCTCTCATTGGTCAGAAACTTCCCCAGATAGGCCAGGCTAGCTGACCTCTGACTTTGGGGTCATGTCTCTTCCCATCTTACCATTGTTGGGAGTAGATCTACCACTGTACTCAGCTCTGTACTTGGTTCTGGCAGTCTGAACTTGTCTTAACGCTTTACTGACTGAGTGAGCCATCCCCACCTCCAATGACATTTGTTTTGTTTTTTTGTTTTTATCTTGTTTTTTGACACCGGGTTGGTCTCACTTGGCTGGCCTGAACTCAAATACTTCTGATTCTATTGATTGTTATGGGTGTTATTTTAGCTACCACTTTTGATAGATATTAATACGATGCCATGCAGAGTGAGAGAATGTGTTTTAGAGCTAGTTTCTCCTGCTGAGAAAGGTGTTGGGGTCTGGAGAGCTGACTCAGTGTGCTAAGAGCCCTGCTGTTGTTCTAGAGGATCTGAGTTTAGTTCTCAGCATCCATGCTGGGCAGCTCACTTCTGTCTGCAACTCCAGCTGGCCTCTGAGGCCCAGGCCCTCACAGGTGACATGTGCTCGACATTGACATATGCACATAAATAAAATGAATCTTAAAACAGGTGCCAGGAAAACCAGCTGGTGGAGGGGCAAAGAGTGTTGAGGAAAGTTCAGGAAAGTGGAGTGTGGAGAACTTGAAACTGGTGTGGCCTTTTAAAGGACGTTAGAGAGAAACGCTGATGGAGTTTTTCTGAGTGTCAGAGCTTTTAAAAAAATCTCTCTGCAATAGCTTGGACTCAGGCCAGTGCTTGGTGAAAGTCCAGGCTGCCACTCTCAGGCTCCCTAAACTTGTGTGTGAAGTATATATGGAACTAGGTTTTGTGTTGGGAAAATAATTTTCCCCACCCAGTAATAATGGACTATTCACGTTATTTAACTTTGGAGATTGTTCTCACATAGACTATCTGCTTCCTTCTGACTCTTGTCATACTTTATCAGTTAAGTCTGTCCCTTGAAGGGTTCACTTTAATGGGCAGAAACTGTTTAGATCCTAGGATGCAAGATGGACCCGCTAGTGGGGAACAGTCAGGCTGCACAAGTCGCTTGAGGCTGTCATGGTTCTGGTACAGGATGATTGACATGCAGTAGCTGTGCTCTAGCCTCATTAAGTAGAGTTGGATATATGGAAACAGTTGGAAGAGTTGGGTTACGGTCCATGTTTAAATTTGATGTCTCTGTTTTACTCCATAGCTAAAGTCAGAGTTAGAATTGTTCGGTTATATCATTGAAGGC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGAAGAGTTGGGTTACGGTCC
60.34
AGAATGCAGTCTGTAGCGGG
59.82
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GAAGAGTTGGGTTACGGTCCA
59.65
AGAATGCAGTCTGTAGCGGG
59.82
141
PCR template sequence:
TTGGAAGAGTTGGGTTACGGTCCATGTTTAAATTTGATGTCTCTGTTTTACTCCATAGCTAAAGTCAGAGTTAGAATTGTTCGGTTATATCATTGAAGGCGTGGGGGCAGCTGGGCGCCTCGGGCCCGCTACAGACTGCATTCTCTGAAGGTCTCAGTTCAGTGCTTCTCAAACAATTGTATGTTTTTAGTGGTGTGCGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-150-5p(1), mmu-miR-146a-5p(1), mmu-miR-184-3p(1), mmu-miR-214-3p(1), mmu-miR-377-3p(1), mmu-miR-146b-5p(1), mmu-miR-7a-2-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TATCATTGAAGGCGTGGGGGCAGCTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.804334278
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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