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mmu_ciTrip12_653
Basic information of circular RNA
PanCircBase ID:
mmu_ciTrip12_653
mm39_Chr. Position ID:
chr1|84721745|84722398|-
Gene name:
Trip12
Transcript:
ENSMUST00000027421.13
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
27
Exon/intron offsets:
0
Genomic length:
653
Exon/intron sizes in nt:
653
Flanking exon/introns:
chr1:84721740-84722398
Splice length:
653
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGGTCCTTTTCACATGTGTTGTATTGTACACTTACCATGCTGTATCTGATTTAGTTTTCTATGATTCAAATGGCCCCTTATCAATCATTACTGGAAAAAAATCACAGAAATTACTTAATCTATTCTAATAATCACTGAATTTAGTATGGTTCTACAATTTTATTAGCTATTTCTAATTTCATCTGCTTATAAATTAAAGATTTTTAGAGTTGTGTATGTAAAGGAAAAAAATAGACTAGTATATGTTGAGTATCCCTAAAGTCAATATCCAGAATATGAAATCGCCTGTAAGAAGCTACAGAGAGAAAATTTACATTTTTCTGTATATGGTAGGTTGTATAAACAGTGGAAGTTAAACTAACCATACCAATATTCAATTATCTGCACAGCTTTTGTGCAAAATATGAATAGTCTATACTTGGGTCCCATCTTCGTATGGATGCTAGTATCTCTATATATCACATAGAAAAGCTTGAATTTCTGAGCACTCTGTCTTGAAGCATTACAGATAAATAATGCTCAGGATATATAGAGTTAAGAGTTATTTGTAGTTTGAAACATTCACCACCGATCTTGACTTGTTGCCCTAAGCAGATAAATCTCAGCTATTGCGCACGTGTCAGTACTTTGGCTTACTTTTCTTTGTTTTA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATCTCAGCTATTGCGCACGT
60.18
CCAGTAATGATTGATAAGGGGCC
58.92
149
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATCTCAGCTATTGCGCACGT
60.18
TCCAGTAATGATTGATAAGGGGCC
60.2
150
PCR template sequence:
GTTTGAAACATTCACCACCGATCTTGACTTGTTGCCCTAAGCAGATAAATCTCAGCTATTGCGCACGTGTCAGTACTTTGGCTTACTTTTCTTTGTTTTAGTAAGGTCCTTTTCACATGTGTTGTATTGTACACTTACCATGCTGTATCTGATTTAGTTTTCTATGATTCAAATGGCCCCTTATCAATCATTACTGGAAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-155-5p(1), mmu-miR-106a-5p(1), mmu-miR-17-5p(1), mmu-miR-106b-5p(1), mmu-miR-320-3p(1), mmu-miR-466b-3p(1), mmu-miR-146b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTCTTTGTTTTAGTAAGGTCCTTTT
siRNA sets
AAAAGGACCTTACTAAAAC, AAAGGACCTTACTAAAACA, AAGGACCTTACTAAAACAA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.900435374
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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