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mmu_ciTrim26_67
Basic information of circular RNA
PanCircBase ID:
mmu_ciTrim26_67
mm39_Chr. Position ID:
chr17|37168455|37168522|+
Gene name:
Trim26
Transcript:
ENSMUST00000124136.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
5
Exon/intron offsets:
0
Genomic length:
67
Exon/intron sizes in nt:
67
Flanking exon/introns:
chr17:37168455-37168633
Splice length:
67
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATACTGGGAAGTAGAGTTGGAGAGAGAAGGCTGGTCAGAGGATGAAGAAGAGGGGGAGGAGGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGGATGAAGAAGAGGGGGAGG
60.34
GCCTTCTCTCTCCAACTCTACT
58.64
60
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGAGGATGAAGAAGAGGGGGA
59.35
GCCTTCTCTCTCCAACTCTACT
58.64
62
PCR template sequence:
GGTCAGAGGATGAAGAAGAGGGGGAGGAGGAAGGTATACTGGGAAGTAGAGTTGGAGAGAGAAGGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GGGGAGGAGGAAGGTATACTGGGAAG
siRNA sets
GTATACCTTCCTCCTCCCC, AGTATACCTTCCTCCTCCC, TTCCCAGTATACCTTCCTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CITRIM26_67_ORF_1
1.1643
0.307634027
0.236165991
90
ORF sequence:
ATGAAGAAGAGGGGGAGGAGGAAGGTATACTGGGAAGTAGAGTTGGAGAGAGAAGGCTGGTCAGAGGATGAAGAAGAGGGGGAGGAGGAA
Peptide sequence:
MKKRGRRKVYWEVELEREGWSEDEEEGEEE
IRESfinder result
IRESfinder score
0.177490596
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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