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mmu_ciTpr_802
Basic information of circular RNA
PanCircBase ID:
mmu_ciTpr_802
mm39_Chr. Position ID:
chr1|150311666|150312468|+
Gene name:
Tpr
Transcript:
ENSMUST00000124973.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
38
Exon/intron offsets:
0
Genomic length:
802
Exon/intron sizes in nt:
802
Flanking exon/introns:
chr1:150311666-150312468
Splice length:
802
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGATTTCATTTTAATATTTTCTATTGTTTTATTTTATGTCTATGGATGCTCTGTCTCTGTATATTTGGGTGTCATGTACGAGCCTAGTGTCCACAGAGATCAAAGAAGGGCATCATATCCCCGGAAACTGTAGTGACAGGTATTGGGGACTGACCCTGGGTCCTCTTGAAGAGCATCAGTGCTCTTAACTGGTTGCTTAAGATGGCTAAGCCATCTTCTAGACTAATAAGATTAATTTTTAAAATGAAGCTGCAGTAGACATATATGCTTCACATTTCTTAGGTGCAATACATCTTGACTATTGCCTAAAACAATTTGCTTTCTATCCAGTGTTACTATGAAGAAAGAAAATATTTTTATTTAGTTTTAATCATACTTAACAGTAGATACAAGAACAGTTCAAATGTGCGCTTGATGTAGCTTAAAAATTACATTTATTGTAATTTAAATTATTAGAAAATAATATTCATATTTACTATTAGTTCAATTTCAGTTTTTATCATTAAGTAAAAGCCCTCCTACCCCCAGATATTTTGGGCTGTTTTTAAAGGGGAAAAATAGCCAACATATTATATGTAACTTAATGTGAATCCTGAAAATTAAAGCTGTTCATATTATTTAGCATATACAGTATGATTTTTCTTTATTTTTATAGAAAGTCCTATGTAAACTTTGTAAATAGCAATTTATCAGATGTGTCATACAAAGTTCTAGTTTTAAGACTGGTTGTAATATTATCTTTGTCTAAATGAAGTTACCATGATCTGACTTTTGAGGTTGAAATTGTATGATCTGAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACCATGATCTGACTTTTGAGGT
57.35
TCTGTGGACACTAGGCTCGT
60.25
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACCATGATCTGACTTTTGAGGTTG
59.24
TCTGTGGACACTAGGCTCGT
60.25
143
PCR template sequence:
CATACAAAGTTCTAGTTTTAAGACTGGTTGTAATATTATCTTTGTCTAAATGAAGTTACCATGATCTGACTTTTGAGGTTGAAATTGTATGATCTGAAAGGTAAGATTTCATTTTAATATTTTCTATTGTTTTATTTTATGTCTATGGATGCTCTGTCTCTGTATATTTGGGTGTCATGTACGAGCCTAGTGTCCACAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-1a-3p(1), mmu-miR-32-5p(1), mmu-miR-206-3p(1), mmu-miR-222-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TATGATCTGAAAGGTAAGATTTCATT
siRNA sets
ATCTTACCTTTCAGATCAT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.935870123
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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