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mmu_ciTpr_601
Basic information of circular RNA
PanCircBase ID:
mmu_ciTpr_601
mm39_Chr. Position ID:
chr1|150289558|150290159|+
Gene name:
Tpr
Transcript:
ENSMUST00000124973.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
16
Exon/intron offsets:
0
Genomic length:
601
Exon/intron sizes in nt:
601
Flanking exon/introns:
chr1:150289558-150290166
Splice length:
601
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGATTTTTATGTAACTACAGGACAATATTTTGGAAGTGAACTGGTGAATAGGTTTTTTGACAAAAGCAGTTGCTACTCTAATTTGGAAATTGACTTCAGCTATTGTGTGTGACTGATTGTAACATTGATTTTTAGGTGTCATTTTGACACTACTAAGAAAAAAAATATTGTTAAAAACCATACTTTTTAGACTTAGTGAATTACATGGTTTGTTTTTCTTGTTTTAGTACTTTAATTTGTAATACATTGCATCTAATTTAAAAAATGAACAATTTTTCCCTTTTTTTTCTTGCATTTTATTTCTGTGTGTGCTTGTGTATGTGCATGCATAAAGGCTACTGTGTGTGTGAGGTCAGGGTAACTAGTGGGAGTTGGTTTTCTCCTGACAGCGTGTGGCTCCCAGGGATCAGACTCGGCTTACTGGGCACCTTTTCCCACTGAGCTATCAAGCTTTAATAGTTTTTAATATTTCCATTCTCTGATAGGTCTAGTAACACTTTACTTTCTACTTCTTAATTTAGTAGTGATGCTTTTGCAAATAATCCTTAAAACTGATTTATGAAAGCACGCAAAAACATCTTATTTGTCTTTTTTATTTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AACTGATTTATGAAAGCACGCA
57.24
TTCCAAATTAGAGTAGCAACTGC
57.12
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAACTGATTTATGAAAGCACGCA
57.88
TCCAAATTAGAGTAGCAACTGC
56.44
140
PCR template sequence:
TACTTTCTACTTCTTAATTTAGTAGTGATGCTTTTGCAAATAATCCTTAAAACTGATTTATGAAAGCACGCAAAAACATCTTATTTGTCTTTTTTATTTTGTAGATTTTTATGTAACTACAGGACAATATTTTGGAAGTGAACTGGTGAATAGGTTTTTTGACAAAAGCAGTTGCTACTCTAATTTGGAAATTGACTTCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-18a-5p(1), mmu-miR-495-3p(1), mmu-miR-130b-3p(1), mmu-miR-721(1), mmu-miR-466d-3p(1), mmu-miR-342-3p(1), mmu-miR-377-3p(1), mmu-miR-300-3p(1), mmu-miR-466b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TCTTTTTTATTTTGTAGATTTTTATG
siRNA sets
AAAAATCTACAAAATAAAA,ATCTACAAAATAAAAAAGA,AAAATCTACAAAATAAAAA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.961260312
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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