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mmu_ciTnrc18_760
Basic information of circular RNA
PanCircBase ID:
mmu_ciTnrc18_760
mm39_Chr. Position ID:
chr5|142712835|142713595|-
Gene name:
Tnrc18
Transcript:
ENSMUST00000152247.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
23
Exon/intron offsets:
0
Genomic length:
760
Exon/intron sizes in nt:
760
Flanking exon/introns:
chr5:142712807-142713595
Splice length:
760
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTGTCCCTGATGGGAACTGAAAGAGTCCCTGGTGTGTAAAGGTAGACCCATGGTGTTTCATTTCTGTTGATGCTAAAATACCCTGCCGGAAAGCAGGAGTAAGGATTTTCTTTTAGCTGACAGTTCTTTGTTATAGACCAGACAGACAGACAGATAGATCAGCTCTGTGGGGAGTCACAGTGGCAGGAGCATGAGGCAGCATGACTGTTGACAGTCAGGAGCAGAGAGAACGAACGCATTCATGCTTAGTGCTCAGCTTGCTTCCTCTACTCCTGTAGTCCAAGGTTCCCTGTGCAGGGAATAGAACCGCCCACAGTGGACTAGGTCTTAATTAACAAAATCAATATAATCCCCATCAGATGTACCCACAACCCAGTCCGACTTAGTGCCTGATTGAGACTCTTCCCAGATAAGTCTAGGTAGAATCAAATTGGCAATTAAAAACCATTACACCGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTCCCGAAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATACCCTCTTCTGGGGTGTCTGAAAACAGCTACAGTGTACTTTCATATAACAAATAAATAAATCTTAAAAAAAAAAAAACATTACTCCATTTGTGGCTGGGCATGCTGTGGCCCTACCCGTGGAAAGGCTGAGTAGTCCAGGGAGTTTGTGCAGTGGGCCTGGAATCTCAGATGGGAGGAAAACAAGGCTAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGGCTGAGTAGTCCAGGGAG
60.03
TGCTTTCCGGCAGGGTATTT
59.96
166
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAGTGGGCCTGGAATCTCAG
60.11
TGCTTTCCGGCAGGGTATTT
59.96
140
PCR template sequence:
GTGGCTGGGCATGCTGTGGCCCTACCCGTGGAAAGGCTGAGTAGTCCAGGGAGTTTGTGCAGTGGGCCTGGAATCTCAGATGGGAGGAAAACAAGGCTAAGTGAGTGTCCCTGATGGGAACTGAAAGAGTCCCTGGTGTGTAAAGGTAGACCCATGGTGTTTCATTTCTGTTGATGCTAAAATACCCTGCCGGAAAGCAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-132-3p(1), mmu-miR-143-3p(1), mmu-miR-212-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AAAACAAGGCTAAGTGAGTGTCCCTG
siRNA sets
CAGGGACACTCACTTAGCC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.705710145
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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