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mmu_ciTmub1_57
Basic information of circular RNA
PanCircBase ID:
mmu_ciTmub1_57
mm39_Chr. Position ID:
chr5|24652397|24652454|-
Gene name:
Tmub1
Transcript:
ENSMUST00000127194.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
57
Exon/intron sizes in nt:
57
Flanking exon/introns:
chr5:24651950-24652454
Splice length:
57
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGGAGTTTGACATTTGGGGTTGTCTAGGAAGCTTTGGGAAGTGGTCTTTGTTGTGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
AAGCTTTGGGAAGTGGTCTTTGTTGTGGGTGGAGTTTGACATTTGGGGTTGTCTAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-384-3p(1), mmu-miR-3065-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GTCTTTGTTGTGGGTGGAGTTTGACA
siRNA sets
ACTCCACCCACAACAAAGA, CTCCACCCACAACAAAGAC, AACTCCACCCACAACAAAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.842464398
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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