top of page
mmu_ciTmem87b_563
Basic information of circular RNA
PanCircBase ID:
mmu_ciTmem87b_563
mm39_Chr. Position ID:
chr2|128672520|128673083|+
Gene name:
Tmem87b
Transcript:
ENSMUST00000110325.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
6
Exon/intron offsets:
0
Genomic length:
563
Exon/intron sizes in nt:
563
Flanking exon/introns:
chr2:128672520-128673117
Splice length:
563
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTACAGTTAACCTCTAGTCATACATTATCTGTATTCTATAGTTTTTTTTTTCATTAATGTGAATCTATTTCTGTTTAAAACATATCTTTTATTTTTTAAAGATTTATTTATTTTATGTATATGAGTACACACTGTAGTTGTACAGATGGTTGTGAGCCTTCATGTGATTGTTGGGAATTGAACTTAGGACCTCTGCTTGCTCTAGCCAACTCCACTTGCTCTGGCCCAAAGATTTATTTATTATTATAAGTTCACTGTAGCTGTCTTCAGACACACCAAAAGAGAGCATCAGATCTCATTATGGGTGGTTGTGAGCCACCACTTGGTTGCTGGGATTTGAACTTAGTACCTTTGGAAGAGCAGTTGGTGCTCTTACCCAGTGAACCATCTCACCAGCCCAAAACATATCTTCAAGGATAGATTTGTTAGTTATACATTTATTTTGAAGTCCTAAAACTTAATGGTTATCTTAATACTAATACACTTTTTAAATAGATATGGAGAGATGAGCTTATGTTTAAAAATGTTACTAAAAACTTGATTATTAATTAACTCTTGGATTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
GTTATCTTAATACTAATACACTTTTTAAATAGATATGGAGAGATGAGCTTATGTTTAAAAATGTTACTAAAAACTTGATTATTAATTAACTCTTGGATTTGTACAGTTAACCTCTAGTCATACATTATCTGTATTCTATAGTTTTTTTTTTCATTAATGTGAATCTATTTCTGTTTAAAACATATCTTTTATTTTTTAAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-190b-5p(2), mmu-miR-29a-3p(1), mmu-miR-216a-5p(1), mmu-miR-138-5p(1), mmu-miR-139-5p(1), mmu-miR-433-5p(1), mmu-miR-362-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AACTCTTGGATTTGTACAGTTAACCT
siRNA sets
AACTGTACAAATCCAAGAG, AGGTTAACTGTACAAATCC, TTAACTGTACAAATCCAAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.960668154
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page