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mmu_ciTmem184a_4420
Basic information of circular RNA
PanCircBase ID:
mmu_ciTmem184a_4420
mm39_Chr. Position ID:
chr5|139794299|139798719|-
Gene name:
Tmem184a
Transcript:
ENSMUST00000110832.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
4420
Exon/intron sizes in nt:
4420
Flanking exon/introns:
chr5:139794277-139798719
Splice length:
4420
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGCACCTCTTGCACCCCCATCCCCGCTGAGCCTGGAAGTTGCTATGGGACCTGGCCCAGCTCAGATGGGCCCCGTGGACAGATGCTGTGATCATGGGACCTCCAGGGACAGCTCCCAGCACCAGTCACTGAGACATGGTAGGATTCTAGGCATGGTGTTCAAGGGTCTATGGCCCTTCTCCAGAGCTAGCATGTCAGAGCCAGGCCTAAGGAGGGAGATCTCTGCCGAGGTGAGGGCAGATTGCTGGGTGGGTATCCCCAGTCACGTCTGAGGCCCCTCACTCTACTCCCTGAGGTCAGAGCTTAATCCCAGTTCACAGACAGGAACACGGAGGGGTTTCCCCGGGCTCACACAGTGGGAGGAGAAAGGGCCTTTCCCCTCCAGAGATGGCGAAGGCGTGGACCTTGCTCTATAGAGAACCTCAAGCCAGCCAGACAGGGAGTTTGGGGAGGAGGGGTGGGGACTGAGTTGGATAGGAACTGGAACAGTGGAGAACAGGAGGTGTGTTGGGGGTATGAGGGGAGAGATGGGGAGCTACGAGAATAGGGGGCAAGGAGCTGGGGGTGGAGGGTGGGTAAGCAGGAAGCAGAAGCCAGGCATCTAGAATGTGGCGGGGTAGCTGGGGAGCTGGAGGTTGGTTAAGGGAGCTGAGAGCCACGGGCTCTCTGGAACACCCACTTGGCACAGTGGGAGGGCCTGAGTCAGTAGGTGAGCTGGGGGCAGGAAGCAAAAGCAAACACCTCGGCTTGTGACATTCACCTGCTGGCTGGTACCTGTCCAGGTGTGCCTCAGTAACCAGGATACAAGGGAGAAAGATCCGTGCCCGAGGGCAGGCCAGGCACATCCTAGCCACAGAGGTGGCACGAGGCACGCTCTTAGGGTCAGCAGGAAGCCAGAGAGACCAACCTCCATTTACCGGTGGAGAAACTGAGGCAAAAGAGGAAGCAGCTTGCCAAGGTCACCAGCCATATGGTACCAGCCTGGGAAATGTCTCTTGTTGGCTGATCACATTGTGTCCTCCCTCCACAGAGGCTAGGGAGGGAGGAAGGAGCAGATAAGGAGCTGGTCTCTGACCTCAGCAGCCTTCGCACCACCCCACGTGTCCCCTGCACACACACACACACACACACACACACACAGCTCCCTCTAACAGTGACCTCCATGCCACACAGGGCACCTCGTCGCCACGGTGGCCTGGAATCGGGAGGAGGCACCCAGCTCCCAGCTGGCTTACTTTGAAAGACTAGAAGCGTAGGCTGATCCAAGAGGGTCACTAGTGAAGGCTACCCTGAGATCCATATCATGTTGAAGACCAACCTGAACAAACCAGTGAGAACACACACACACACACACACACACACACACACACACACACATCTCAAAATAGAACAAAGGTAAAGGGACTGGACGCAGAGGTCTGGGCTCTGTTCCTAGAACTGAGGTGGGGGTAGGGCACGTCCCTATTCTGTTTCTTGTAGAAAAATCCAGAAGGTCAAGACAGCTTCAAGGTGAACAGTACCTTCCTGGAGTTTTGTTTTGTTTTGTGACAGCATCTTGTAGTTCAGGATGGCCTCAAAGTCCTTATGTAGCAGAAGATAACCTTGAACTCCTGATCTTCCTGCTTCTACTTCCCAAGTACTGAGATGACAGGTGTGCACCACTTACCCTATTTCTATGGGGCTAGGGATAAAGCCCAGGGCTTCCTGCATGCTAGGTAGGCACTCCACCATATCCCCAGCCCTTTCCTTCCATTTTGTCAGGCACGCATGACACCTGACACCCTGTTTCGTTTCCTACTCTGATCTCCGGTACCTTATCCTATCAGAGGACATCTCACAGAGCTGTGTGGCTGTACATCGTTTTTACCAATTCTATAGTATTCCTTTATACATGGGCTTATGGTGTAACCAGTCTGGCCCTCCCACGATGAGCGTAGCCGCAGTATTTGTTCCTATATTTTGCTGTGATGAACATCTTTGCACACAGTTTCTTTCCTCTTTATTTCTGGATATATGTATTCGGTGGGGTAGATTCCTAAAAGGGGTCAAAGAGCATAAGGTCTTCCATGGTCCCCACACTGAGACCTACCTGTGTTACAAGGGACCTTTCAGTCTGCAGGACCCAGGAAATTCTTATTGAATAAATGAATGAATGAATGAATGAATGAATAGCCCAACTTCCAGAATGTTCTTCAAGAACTACAGAGTATCAAAATATGTTGCAGGCTTGAAAATGCTGAAGAAATGAATTTTAGGCCTGAGGTGATGGACAGACTTGCCCACTCAGTTTCTCAACATTCCTCACGCTGCCAGCCTTTAACACAGTGCCTCCTGTTGTGGTGGCTCCAACCATAAAATTATTCTGTTGCTTCTAGCATGAATCTTTTTTGTTGTTGTTGTTTTTTTGCTTGTTTTTTCCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTATGTAGACCAGGTTGGCTCGAACTCTGAAATCTGCCTGCCCTCTACCTCCCGAGTGCTGGGATTAAAGGCATGCGCCACCGCGACCGGCTACTGCTATGAATCTTAGTGTAGATATCTGATGTGCAGGATACCTGATATACAATCTTTAAGGAGGTCGAGACCCACAGGTTGAGAACCACTGGACTATATAGTGCGGCACCCCCACTCCTCCATCTCAAAACCAACAACAGCAACCTTTTTTTTTTTTTAAATTTCTTTCCTTTTTAAATATTTTACACTGTATTGAAGAAGCAAGTTAGAAGAAAGGTTGTCTGGTTTTCAACCTTTTTATTTATTTATTTATTTATTTATTTATTTATTATTATATAAGTATACTGTAGCTGTCTTCAGACCCTCCAGAAGAGGAGGTCAGATCTCATTACAGATGGTTGTGAGCCACCATGTAGTTGCTGGGAATTGAACTCAGGACCTCCAGGAGAGCAGTCAGTGCTCTTAACCTCTGAGCCATCTCTCCAGCCCCGGTTTTCAGCCTTTTACATGTCTATCAAAACAGGAGATAGGTTAGTAGGGAAAGTGCCTGCCCTGTAAACCTGAGGACCTGAGCTCAATATAGCACCCACCAAAAAACTCTAGGGACAGTGGGACACGTCAGTATTCTCAAGGAGGGCTGACCAACCAGATCCTTGAAAGTCATCGGCCAGCCATAAGTTTAGCCACATCGATAGCTCCAGGCTCAGGAAGAGATTTTTGTCTCATAAACTACAAGGGTGGTGTCAGAGGAATGATACTGGAGGTGGCAAGAGGAAAGGAGGACTAGAGGTGTGGCCTGTGGTTTTGCGCATGTGCCTACAGGAGGAGCTGCAGAGACAGCTTGGCAGTTAAGAGCACTGGCTGCTCTTGCAGAGCACCCACATTGGGTAGCTCACAGCTGCAGGTAACTCCAGAAGCACGGGATCTGACGCCCTCTTCTGGTCTCCATAGGCACTGCATGCATATGTGGCATACACTCACACAGATGCCAAAATGCATAACATTTTTATTTGTTAATCACAGATTTTTTTTTTTTTGTCTTTGTGGTGCTGGGGGTTGATCATGCCAGGCAAGCGCTCTCCCAGGAAGCCACACCCCAGCCTCAATACAGTTTTAAAGAATTGAAGATATTGTTCAATGGGAAATCACTTGCTTAGCCTGTGTCAAACTTTGGGTTAAATTAAATAATAAAGGCTGGCTATGGTGGCTCACACCTTTAATCCCAGTACTTAGGAAGCAGAGACAGGCAGGTTTCAATTAGTTCAAGACTAGCTAGGTCTACATAGTGAGTTTCAAGTCAGCCGGGGCTACATATACATAGTGAGATATATACTAACAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTTTAGTATATATTTGTATATATTAAGCATTATTTAATTTGGAGGGGTCATGTTCTAGGGATTGAATCCGGAGCCTTGCTCTTGTTAGGCATGTACTCTACCTTAGACATGTCTCTGCCCCCAATCCTCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTGCACTTAGTTTTTTGCTCATGAATGCTGGGGACTTGAATTTTGGACCTTAGGTTTGCAAAGCAAGATTTTGCCAACTGAACCCCTCTCCAGTCCCTTTCTAGATGGAGACAGGGATGCTAAGTTGGTCTTAGCGCCCATGAAGCCCCTGTCATAAGCGAGTCTCACTTTTCACCTAATATATGTGCTACGTTCCCTCTGATTACTTCCTGTCCGTACTGGTCCTGTGCTCGGTAGAACATTAGGCAGTGTAGGAGAAAGAGCATCCTGGCGCGCCACCCGGCTCTGGTCCTCTCCCATTTGCCTGGCACCCGTGCAGTGGACAGCCGGGCCAGGAACTGGGGCAGAGGTGC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTCCTCTCCCATTTGCCTGG
60.39
ATCACAGCATCTGTCCACGG
60.11
159
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGTCCTCTCCCATTTGCCTG
60.39
ATCACAGCATCTGTCCACGG
60.11
160
PCR template sequence:
GGAGAAAGAGCATCCTGGCGCGCCACCCGGCTCTGGTCCTCTCCCATTTGCCTGGCACCCGTGCAGTGGACAGCCGGGCCAGGAACTGGGGCAGAGGTGCGTAAGCACCTCTTGCACCCCCATCCCCGCTGAGCCTGGAAGTTGCTATGGGACCTGGCCCAGCTCAGATGGGCCCCGTGGACAGATGCTGTGATCATGGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
50
Interacting miRNAs (#binding sites)
mmu-miR-140-5p(1), mmu-miR-155-5p(1), mmu-miR-134-5p(1), mmu-let-7a-5p(1), mmu-miR-141-3p(1), mmu-miR-1a-3p(1), mmu-miR-7b-5p(1), mmu-miR-429-3p(1), mmu-miR-206-3p(1), mmu-miR-200b-3p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-miR-19b-3p(1), mmu-miR-200c-3p(1), mmu-miR-211-5p(1), mmu-miR-335-5p(1), mmu-miR-19a-3p(1), mmu-miR-7a-5p(1), mmu-miR-222-3p(1), mmu-miR-339-5p(1), mmu-miR-139-5p(1), mmu-let-7d-5p(1), mmu-miR-149-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-130b-3p(1), mmu-miR-301b-3p(1), mmu-miR-467b-5p(1), mmu-miR-340-5p(1), mmu-miR-324-3p(1), mmu-miR-297a-5p(1), mmu-miR-383-5p(1), mmu-miR-342-5p(1), mmu-miR-466d-3p(1), mmu-miR-705(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-673-5p(1), mmu-miR-532-5p(1), mmu-miR-3087-3p(1), mmu-miR-484(1), mmu-miR-3065-5p(1), mmu-miR-3470b(1), mmu-miR-466b-3p(1), mmu-miR-350-3p(1), mmu-miR-540-3p(1), mmu-miR-3105-3p(1), mmu-miR-574-5p(1), mmu-miR-338-3p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GGGGCAGAGGTGCGTAAGCACCTCTT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.685446805
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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