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mmu_ciTasp1_35
Basic information of circular RNA
PanCircBase ID:
mmu_ciTasp1_35
mm39_Chr. Position ID:
chr2|139819491|139819526|-
Gene name:
Tasp1
Transcript:
ENSMUST00000046656.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
8
Exon/intron offsets:
0
Genomic length:
35
Exon/intron sizes in nt:
35
Flanking exon/introns:
chr2:139793499-139819526
Splice length:
35
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTCAGGAGGTGTCTGAAGAATTGGCTGATGCATGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
AATTGGCTGATGCATGGGTCAGGAGGTGTCTGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GGCTGATGCATGGGTCAGGAGGTGTC
siRNA sets
ACACCTCCTGACCCATGCA, GACACCTCCTGACCCATGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.165897104
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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