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mmu_ciTacc3_296
Basic information of circular RNA
PanCircBase ID:
mmu_ciTacc3_296
mm39_Chr. Position ID:
chr5|33824089|33824385|+
Gene name:
Tacc3
Transcript:
ENSMUST00000074849.13
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
6
Exon/intron offsets:
0
Genomic length:
296
Exon/intron sizes in nt:
296
Flanking exon/introns:
chr5:33824089-33824386
Splice length:
296
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGGTACTTAGCCCTTAATGACAGCCTTATCTGAAATGTGTAATCCAGTCAGCCCAGGCCATCTATCCTTGATTCCTGGAGCATCCTATAGCTTCTGTATCATGTCTGGTCAAGTCTGAGTGTAAGAGCCTTTGTCTTGCAGCAGAGTTCTGACCCAGGACTCTCCTCACTCCCAGATAATCCTGGTTTTATCGGGGTATGTTGTGGTCTCCCCAGACCACTTTGCTCAACAAGATCATCCTGGCTTCTGGGAATGTATCTGTAAAAGCAATGATGAATCATGCTAATTTTCCTA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCCCAGACCACTTTGCTCAA
60.18
GATAGATGGCCTGGGCTGAC
59.96
153
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTCCCCAGACCACTTTGCTC
60.32
GATAGATGGCCTGGGCTGAC
59.96
155
PCR template sequence:
GGTATGTTGTGGTCTCCCCAGACCACTTTGCTCAACAAGATCATCCTGGCTTCTGGGAATGTATCTGTAAAAGCAATGATGAATCATGCTAATTTTCCTAGTAGGTACTTAGCCCTTAATGACAGCCTTATCTGAAATGTGTAATCCAGTCAGCCCAGGCCATCTATCCTTGATTCCTGGAGCATCCTATAGCTTCTGTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GCTAATTTTCCTAGTAGGTACTTAGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CITACC3_296_ORF_1
0.8282
-0.055521486
0.047822649
132
ORF sequence:
ATGTTGTGGTCTCCCCAGACCACTTTGCTCAACAAGATCATCCTGGCTTCTGGGAATGTATCTGTAAAAGCAATGATGAATCATGCTAATTTTCCTAGTAGGTACTTAGCCCTTAATGACAGCCTTATCTGA
Peptide sequence:
MLWSPQTTLLNKIILASGNVSVKAMMNHANFPSRYLALNDSLI
IRESfinder result
IRESfinder score
0.756767655
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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