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mmu_ciStrbp_1188
Basic information of circular RNA
PanCircBase ID:
mmu_ciStrbp_1188
mm39_Chr. Position ID:
chr2|37515305|37516493|-
Gene name:
Strbp
Transcript:
ENSMUST00000183690.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
6
Exon/intron offsets:
0
Genomic length:
1188
Exon/intron sizes in nt:
1188
Flanking exon/introns:
chr2:37515301-37516493
Splice length:
1188
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTACTTTAAATGTGATTAAAAAACAAATATGAAGCTATAGCAGAGGAAATTCTTGAAATAATGTTACTATGACGATATTCTGAGTTAGTTATGGCAAATGTCTGTTTTTTGCCCTAGAAATAATTATTCAGTTTTATGAAATCTTTTATGCATATAACTTCTCTTTTGTTTTGTCATTTAAGTTTAGACCTGTTATTTATATAAATTGTAAAGACTATCTTCTTATTGTTGTTGTTTTCTGACTTAAAGGTTCTATACCTTTTAGAAGTAGGTGCTGTTCTCCTTTGAATTCTATATGGATCATTGATCACTTATGGATGGATCACTTGCTGCTTATGATGGCCTTTATGGCTGGCCCATTGCCGTTAGTGTGGCGTTCCATTTGTGTGGAGATTATTTGATAGAATGGTGTCTTTTAAATTTCTCATGAAATGTAAACACAAATCCTAACATGTTAAGTGTAATGTTACAGTATATACTCTGCTATTAGGTTAAGTGCAGTGTTTGCCTGATACTAATACTAACTATGGATATAACATATATTGTGATATTGATTTAATTTGGAAATTATGCTTGATCCAGTCAGGACTAGAATTTAAAAATTTGTAAAAATAATGATTTAAAGGCTTATTTATAAAATAATGAACAAATATGAATATTTGTGCAGCACCATGAGTTCTAATATAGAGATGGGTTTCTTTGTTTATTCTAATTTTTGCTCTTGAAGTAGCCTGTTTGACTGAACTCTTTATAGTTGAGTGTTTCCTAATTTAAGTAGGATTTAGATAGATCAATTTGTACCTTGATTATTTATTAGCTATTACATATGTGAAAACATGTTAATTGTAAATTAATTATATGACTAGTTTTTTTTTTAAAGTAGGGTAATTAAAAATTGTAAGATTTTTATCTCAAATGTCTTTAGAAAATATCTAAAATTACTTGGTTTAAAAAATGATTAGGTACTGGAGAGGTGTCTCAGCTGTTAAAGTCTAGGTTCACAACCAAAATTATAAAAACTGGTTGGATTAGAGTAGATAATCATGGGGGAAGAGTTAAATGCTCCTTAAATGCTAAATTGTCTACACTTTTTTGGCTTCTCTTTTAGATAGAAATGTCAGCTCACATTTAACTGGAATCCTTTTAACACTTGGTGCATGTACTAATTTGTAATTTAATATCTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCCTTTTAACACTTGGTGCATGT
59.04
TGCCATAACTAACTCAGAATATCGT
57.95
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGAATCCTTTTAACACTTGGTGCA
59.96
TGCCATAACTAACTCAGAATATCGT
57.95
150
PCR template sequence:
ACACTTTTTTGGCTTCTCTTTTAGATAGAAATGTCAGCTCACATTTAACTGGAATCCTTTTAACACTTGGTGCATGTACTAATTTGTAATTTAATATCTTGTAAGTACTTTAAATGTGATTAAAAAACAAATATGAAGCTATAGCAGAGGAAATTCTTGAAATAATGTTACTATGACGATATTCTGAGTTAGTTATGGCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-23b-3p(1), mmu-miR-322-5p(1), mmu-miR-335-5p(1), mmu-miR-26b-5p(1), mmu-miR-501-3p(1), mmu-miR-323-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AATTTAATATCTTGTAAGTACTTTAA
siRNA sets
TTAAAGTACTTACAAGATA, TAAAGTACTTACAAGATAT, AAAGTACTTACAAGATATT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.93001511
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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