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mmu_ciStoml2_119
Basic information of circular RNA
PanCircBase ID:
mmu_ciStoml2_119
mm39_Chr. Position ID:
chr4|43031209|43031328|-
Gene name:
Stoml2
Transcript:
ENSMUST00000030169.15
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
119
Exon/intron sizes in nt:
119
Flanking exon/introns:
chr4:43031108-43031328
Splice length:
119
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGAGCGAGGCAACCTTCACCAGAGGCTCGGGACCGACATCACCTGGGTCTTGAGCTGGGAAGGAGTGGGCTTCTAACTTTGGGGGAAGGACTGTGGTCACAGGTCATGGTCCCCAC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTTTGGGGGAAGGACTGTGG
60.25
CCTCTGGTGAAGGTTGCCTC
60.32
68
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTTTGGGGGAAGGACTGTGG
60.25
GCTCAAGACCCAGGTGATGT
59.67
98
PCR template sequence:
GGAAGGAGTGGGCTTCTAACTTTGGGGGAAGGACTGTGGTCACAGGTCATGGTCCCCACGTGAGAGCGAGGCAACCTTCACCAGAGGCTCGGGACCGACATCACCTGGGTCTTGAGCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
TCATGGTCCCCACGTGAGAGCGAGGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.655970389
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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