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mmu_ciSrsf7_462
Basic information of circular RNA
PanCircBase ID:
mmu_ciSrsf7_462
mm39_Chr. Position ID:
chr17|80509657|80510119|-
Gene name:
Srsf7
Transcript:
ENSMUST00000063417.11
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
6
Exon/intron offsets:
0
Genomic length:
462
Exon/intron sizes in nt:
462
Flanking exon/introns:
chr17:80509633-80510119
Splice length:
462
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGGGTCAGACTATCCGATTTAGTGCTCTTATAGTTAATTATATAGCACCAATATCCAAAGAGTTCAAAGTGTTGAAAATTATTGAGAAATGGGTGTTAGCCCAAAGCTTGGATAAGTAGAAATATCTGCACCTTGTTAATCCAATTGAGAACTTCATTTATACATGACCTATTGCTTGGCTGAATTTATGGAGAAATTAATGTTATGTGACATTTTACTTTGGAGGTAAAAGGCCCTAAAAGTTGTAGGTGAATAGAGAAGAGAAATGTGCTTTAGAATAATGTAAAAGATGAACTGTAATTATACAGCAGTTCACTAGTTCATGGAAATGTAAGCCCTTTAAAATTGGCTTTTTAAAAGAAATGAGACTGGCTCTGAAATTTTAGCTGTAATATGGCAATTTATTGTAATTTGGGGGGGTTGTAGGATTAAAAAGAAGATTGGTTGGTGCTTTTTCTTA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACTGGCTCTGAAATTTTAGCTGT
58.6
TGAACTCTTTGGATATTGGTGCT
58.08
161
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GACTGGCTCTGAAATTTTAGCTGT
59.54
TGAACTCTTTGGATATTGGTGCT
58.08
162
PCR template sequence:
AAATGAGACTGGCTCTGAAATTTTAGCTGTAATATGGCAATTTATTGTAATTTGGGGGGGTTGTAGGATTAAAAAGAAGATTGGTTGGTGCTTTTTCTTAGTAGGGTCAGACTATCCGATTTAGTGCTCTTATAGTTAATTATATAGCACCAATATCCAAAGAGTTCAAAGTGTTGAAAATTATTGAGAAATGGGTGTTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-29a-3p(1), mmu-miR-18a-5p(1), mmu-miR-27a-5p(1), mmu-miR-452-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GTGCTTTTTCTTAGTAGGGTCAGACT
siRNA sets
GACCCTACTAAGAAAAAGC, ACCCTACTAAGAAAAAGCA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.841799012
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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