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mmu_ciSptbn2_553
Basic information of circular RNA
PanCircBase ID:
mmu_ciSptbn2_553
mm39_Chr. Position ID:
chr19|4794583|4795136|+
Gene name:
Sptbn2
Transcript:
ENSMUST00000008991.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
22
Exon/intron offsets:
0
Genomic length:
553
Exon/intron sizes in nt:
553
Flanking exon/introns:
chr19:4794583-4795136
Splice length:
553
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGGCCAAGGGCAAGGGTGAAAACAAAGTTCCCAAGAGCATCTTCTCACTCAGACCTTTGTTTTTTCCCTTGTTTTGTGGTGATGGGAGGTAGAGGGTGAGTGCTGTTGATTGGAGATAAGGCCTTACTATGTATCTTTGGCTGGCTTTGAACTCAAAGAGATCCACTTTTATCTGCTGGGATTAATGGTGCATGTATGCTGCCATGTCCGGCTCCTTTGTTTTTCCCTATGATAGGGTGTCTGTGGCATTATCTTGTTGCTTGTAGCCCTAGACTTGATTTTTCTTCCCCACACTCGGGAGAGTGGCCTCTGTTGATAGGAAAGAATGAGGATTGAAGGGGTATCACATTGTCCCCCACCCACCCAACCGTCCCCACCCACCCAACCGTCCCCCTCCGGAGTCTTGACAAAGAGTCTTTGAGAGGATTCAGAAAAGAGAAGAATGTAGGGAGGGCTGGAGGGCTCAAGGTGGAGCAGGTAGGTCCAAGGGGACACAGGCTTGCAGTTCCTTTTGCAAGCCTTTCAGTGTGTCTTCTGTTGCTCTGGACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCAGTTCCTTTTGCAAGCC
59.9
ACCCTCTACCTCCCATCACC
60.03
150
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCAGTTCCTTTTGCAAGCC
59.9
CCCTCTACCTCCCATCACCA
60.03
149
PCR template sequence:
AGGGCTGGAGGGCTCAAGGTGGAGCAGGTAGGTCCAAGGGGACACAGGCTTGCAGTTCCTTTTGCAAGCCTTTCAGTGTGTCTTCTGTTGCTCTGGACAGGTGAGGCCAAGGGCAAGGGTGAAAACAAAGTTCCCAAGAGCATCTTCTCACTCAGACCTTTGTTTTTTCCCTTGTTTTGTGGTGATGGGAGGTAGAGGGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-335-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTGCTCTGGACAGGTGAGGCCAAGGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.748121155
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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