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mmu_ciSpaca6_82
Basic information of circular RNA
PanCircBase ID:
mmu_ciSpaca6_82
mm39_Chr. Position ID:
chr17|18052401|18052483|+
Gene name:
Spaca6
Transcript:
ENSMUST00000226899.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
82
Exon/intron sizes in nt:
82
Flanking exon/introns:
chr17:18052401-18056370
Splice length:
82
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTGTTTTATGGGCATAAGTGGTGGGGAAAGTCATCTTGAGGAAGTGACCCTGGGAACCTGTCTGAGTTAGGTTATTTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAGGAAGTGACCCTGGGAAC
59.67
TTTCCCCACCACTTATGCCC
59.96
74
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GAGGAAGTGACCCTGGGAAC
59.67
CCCCACCACTTATGCCCATA
59.15
71
PCR template sequence:
GAGGAAGTGACCCTGGGAACCTGTCTGAGTTAGGTTATTTGGTGAGTGTTTTATGGGCATAAGTGGTGGGGAAAGTCATCTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GTTAGGTTATTTGGTGAGTGTTTTAT
siRNA sets
AACACTCACCAAATAACCT, AAAACACTCACCAAATAAC, ATAAAACACTCACCAAATA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.813879483
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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