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mmu_ciRnf167_1090
Basic information of circular RNA
PanCircBase ID:
mmu_ciRnf167_1090
mm39_Chr. Position ID:
chr11|70538935|70540025|+
Gene name:
Rnf167
Transcript:
ENSMUST00000037534.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
1090
Exon/intron sizes in nt:
1090
Flanking exon/introns:
chr11:70538935-70540046
Splice length:
1090
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGATGTTTTCCCCATTTCCCTATATGGATCCTGGGTAGGGGCGAAGTGGCCGTGCTCAGGAGGTAGGAAGTAGTGGAGTTAGCAGCGGAATGCAGTGGACTGCGGATAGTTCAATGATAGGGTGCTTTTTCTAGTATGAGTGAGATTCTAGGTTGAATCTCCAGCAAAAAAAAAAAAGTGTCCCCAATCCAGAAAAACCTAAGTGCATGATCATGTCCAGCGCGCAGAGTCCAGAATCCAGAGATAATAGATAGTGCCCACCTCTAGAACTTAACATTTTTTATTTTATATGCATAGGTGTGAGAGTGTCAGATCCCCTGGAACTGGAGTTACAGTCAGTTGTGAGCTGCTACATGGATGCTAGGAACTGAACTCCGGTTCTCTGGAAGAACAGCCAGTGCGCTTAAGCACTGAACCATCTACAACCCCTAGAACTCCCAAGTTTAAGAGGGAGTCTGAGAGTGGGCTAAGATAAAAAGCAGGTGCTTATCAGCAGTCTCTGGAGCAACTTACTGTTTGTATAGATGGCCATGGACAGCTTTTTATGGGTTCTGAGTCAAATGAGAAATAGAAATTAACCTAGGGCTATCGTGCCAGTGTGATAAGCATGTCTGTAGTAGTTCACTACAAAGTTCATGCCACATAGCAAGAATTCATTCGGCCACAGTTAGCAGTAGAGTTGTAAGATGGCTAATTGGAAAATGAAACTTGTTGAAAATGCCATGAATGAGTAGCAAGGTGAACCACTATCGGTGGGAAACTTAAAAGCAGAACTAAACTACGCTTGAGAAGTTAAGGGAGCCTCTGGTAAGGGATGTAGTTTACTGTAACTGCATCTTCAAGAAAGCTGAGAGATCCCTTTTCTTTTTTCTTTTTTTTGAGACTGGACTCTGGAACTCTGGCTGTCCCCAACTCACAGTAGTCTCAAGTGCTGGGATTAAATGCATGTATCACCATGTCTGAGTTGTAGATTCAGTGTTGGGTGGGATGCTCAGACCTCCAGAATGAGCAATGATAGAGCTGCAGAATGCAGGTAGTATATAGTGTTATGTGTGGTAGGTCCTGTGGAAGACAGAACTAAAGATGAAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGTGTGGTAGGTCCTGTGGA
60.11
TCCACTGCATTCCGCTGCTA
61.9
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTCAGACCTCCAGAATGAGCA
59.17
GCCCCTACCCAGGATCCATA
60.18
142
PCR template sequence:
GCTCAGACCTCCAGAATGAGCAATGATAGAGCTGCAGAATGCAGGTAGTATATAGTGTTATGTGTGGTAGGTCCTGTGGAAGACAGAACTAAAGATGAAAGTGATGTTTTCCCCATTTCCCTATATGGATCCTGGGTAGGGGCGAAGTGGCCGTGCTCAGGAGGTAGGAAGTAGTGGAGTTAGCAGCGGAATGCAGTGGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-200a-3p(1), mmu-miR-217-5p(1), mmu-miR-324-5p(1), mmu-miR-452-3p(1), mmu-miR-7a-2-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ACTAAAGATGAAAGTGATGTTTTCCC
siRNA sets
AAAACATCACTTTCATCTT, CATCACTTTCATCTTTAGT, AAACATCACTTTCATCTTT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.578907211
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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