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mmu_circZzef1_1896
Basic information of circular RNA
PanCircBase ID:
mmu_circZzef1_1896
mm39_Chr. Position ID:
chr11|72791457|72808695|+
Gene name:
Zzef1
Transcript:
ENSMUST00000069395.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
12
Exon/intron indexes:
41,42,43,44,45,46,47,48,49,50,51,52
Exon/intron offsets:
0,695,6200,7762,9498,10530,12191,12419,14585,15841,16537,17072
Genomic length:
17238
Exon/intron sizes in nt:
1,75,13,32,00,12,01,92,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr11:72790520-72791457|chr11:72808695-72813155
Splice length:
1896
Other database IDs:
circBase: hsa_circ_0106820, circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_20613
Human Ortholog IDs:
Mature spliced Sequence:
CCGAGTGGGCCTGGACTGGGCCTGCTCCATGGCAGAGATCCTTCGGTCACTCAACAATGCCCCGTTGTGGCGAGATGTCATTGCCACCTTCACAGACCACTGCATCAAGCAGCTGCCATTCCAACTGAAGCACACCAACATCTTCACTCTGCTGGTGCTTGTCGGCTTCCCCCAGGTCCTCTGCGTGGGAACCCGCTGTGTTTATATGGATAATGCCAATGAACCCCATAATGTGATCATCTTGAAACACTTCACTGAGAAGAATAGAGCTGTGATTGTCGACGTCAAAACAAGGAAAAGGAAAACAGTGAAGGACTATCAGCTTGTCCAGAAGGGAGGAGGACAAGAGTGTGGCACCTCTCAGTCCCAGCTGAGCCAGTACTCCCAGCACTTTGCCTTTATTGCTAGTCACCTTCTGCAAACCAGCATGGATAGCCATTGTCCCGAGGCAGTGGAAGCAACCTGGGTCCTGTCCCTGGCTCTCAAAGGTTTATATAAAACACTAAAGGCTCATGGTTTTGAAGAGACCCATGCCACCTTCCTCCAGACCGATCTGCTAAAGCTGCTGGTGAAGAAGTGCAGCAAAGGGACCGGCTTCAGTAAAACCTGGCTCCTCCGAGACCTAGAGATTCTGTCCATCATGCTGTACTCGTCAAAAAAGGAGATCAACACTCTGGCTGAACATGGAGACCTGGAGCTAGATGAACGAGGAGACCAAGAAGAAGAACTGGACCGGCCAGTTAGTAGCCCTGGCGAAGCAGAACAGAAGAAGCTAGACCCTCTTGAAAATTTGGATGAACCCACCAGAATATGCTTCTTGATGGCTCATGATGCCCTCAATGCCCCTCTGCACATTCTCCGGGCCATATATGAACTGCAGATGAAAAAGACTGATTCGTTCTTCCTAGAGGTTCAGAAGAGGTTTGATGGGGATGAGCTCACTACAGATGAGAGGATTCGCTCCTTGGCCCAGAGGTGGCAACCCAGCAGGAGTCTGAGGCTGGAGGAGCAGAGCGCCAAAGCTGTGGACACAGACATGATTATCTTGCCATGCTTGTCCCGGCCTGCACGCTCTGACCAAGCCACTCCTGAATCAAATCCTGTGACCCAGAAGCTGATTTCCAGCACAGAGAGCGAGCTACAGCAGAGCTATGCCAAGCAGCGCCGGAGCAAGAGTGCTGCCCTCCTGCACAAGGAGCTGAACTGCAAGAGCAAGCGGGCTATCCGGGACTACCTCTTCCGTGTGAACGAGGCCACCTCAGTCCTATATGCTCGCCATGTGCTCGCCTCCCTGCTGGCCGAGTGGCCAGGGCATGTGCCAGTGAGTGAGGACATCCTGGAGCTTAGTGGCCCTGCACATATGACCTACATTCTGGATATGTTCATGCAGCTGGAAGAAAAGCACCAGTGGGAGAAGATCCTACAGAAAGTACTCCAGGGCTGCCGAGAGAACATGCTGGGCACCATGGCCTTGGCTGCCTGTCAGTTCATGGAGGAACCAGGAATGGAGGTGCAATGCAACACTGAGGAAGGCTGTGATGAACTAGCCATGTCCAGCAGTAGTGACTTTCAGCAGGACCGGCACAACTTCAGCGGGTCGCAACAGAAGTGGAAAGATTTTGAGCTTCCAGGAGATACTCTGTATTACCGATTTACCTCGGACATGAGCAACACTGAGTGGGGATACCGATTCACTGTGACAGCTGGACATCTGGGGCGGTTCCAGACAGGGTTTGAGATCTTGAAGCAGATGTTGTCTGAAGAAAGGGTTGTACCTCACCTCGCATTGGGCAAGATCTGGGAATGGCTGGTGGGTGTGGCCTGCCGCCAAACCGGTCATCAGCGCCTGAAAGCCATCCACTTACTACTGAGGATTGTGCAATGCTGCAGCCACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGCCTGAAAGCCATCCACTT
60.96
GTGGTCTGTGAAGGTGGCAA
60.47
153
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CGCCTGAAAGCCATCCACTT
60.96
TGGTCTGTGAAGGTGGCAAT
59.52
152
PCR template sequence:
TCTGGGAATGGCTGGTGGGTGTGGCCTGCCGCCAAACCGGTCATCAGCGCCTGAAAGCCATCCACTTACTACTGAGGATTGTGCAATGCTGCAGCCACAGCCGAGTGGGCCTGGACTGGGCCTGCTCCATGGCAGAGATCCTTCGGTCACTCAACAATGCCCCGTTGTGGCGAGATGTCATTGCCACCTTCACAGACCAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
35
Interacting miRNAs (#binding sites)
mmu-miR-673-5p(3), mmu-let-7a-5p(2), mmu-miR-1904(2), mmu-miR-20b-5p(1), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-32-5p(1), mmu-miR-103-3p(1), mmu-miR-135a-5p(1), mmu-miR-31-5p(1), mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-106b-5p(1), mmu-miR-33-5p(1), mmu-miR-196a-5p(1), mmu-miR-326-3p(1), mmu-miR-25-3p(1), mmu-miR-10b-5p(1), mmu-miR-214-3p(1), mmu-miR-128-3p(1), mmu-let-7d-5p(1), mmu-miR-149-5p(1), mmu-miR-363-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-370-3p(1), mmu-miR-107-3p(1), mmu-miR-224-5p(1), mmu-miR-384-3p(1), mmu-miR-207(1), mmu-miR-3087-3p(1), mmu-miR-484(1)
siRNAs for circular RNA silencing
Junction sequence
GCTGCAGCCACAGCCGAGTGGGCCTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCZZEF1_1896_ORF_1
1.2531
0.360499464
1
3762
ORF sequence:
ATGGCAGAGATCCTTCGGTCACTCAACAATGCCCCGTTGTGGCGAGATGTCATTGCCACCTTCACAGACCACTGCATCAAGCAGCTGCCATTCCAACTGAAGCACACCAACATCTTCACTCTGCTGGTGCTTGTCGGCTTCCCCCAGGTCCTCTGCGTGGGAACCCGCTGTGTTTATATGGATAATGCCAATGAACCCCATAATGTGATCATCTTGAAACACTTCACTGAGAAGAATAGAGCTGTGATTGTCGACGTCAAAACAAGGAAAAGGAAAACAGTGAAGGACTATCAGCTTGTCCAGAAGGGAGGAGGACAAGAGTGTGGCACCTCTCAGTCCCAGCTGAGCCAGTACTCCCAGCACTTTGCCTTTATTGCTAGTCACCTTCTGCAAACCAGCATGGATAGCCATTGTCCCGAGGCAGTGGAAGCAACCTGGGTCCTGTCCCTGGCTCTCAAAGGTTTATATAAAACACTAAAGGCTCATGGTTTTGAAGAGACCCATGCCACCTTCCTCCAGACCGATCTGCTAAAGCTGCTGGTGAAGAAGTGCAGCAAAGGGACCGGCTTCAGTAAAACCTGGCTCCTCCGAGACCTAGAGATTCTGTCCATCATGCTGTACTCGTCAAAAAAGGAGATCAACACTCTGGCTGAACATGGAGACCTGGAGCTAGATGAACGAGGAGACCAAGAAGAAGAACTGGACCGGCCAGTTAGTAGCCCTGGCGAAGCAGAACAGAAGAAGCTAGACCCTCTTGAAAATTTGGATGAACCCACCAGAATATGCTTCTTGATGGCTCATGATGCCCTCAATGCCCCTCTGCACATTCTCCGGGCCATATATGAACTGCAGATGAAAAAGACTGATTCGTTCTTCCTAGAGGTTCAGAAGAGGTTTGATGGGGATGAGCTCACTACAGATGAGAGGATTCGCTCCTTGGCCCAGAGGTGGCAACCCAGCAGGAGTCTGAGGCTGGAGGAGCAGAGCGCCAAAGCTGTGGACACAGACATGATTATCTTGCCATGCTTGTCCCGGCCTGCACGCTCTGACCAAGCCACTCCTGAATCAAATCCTGTGACCCAGAAGCTGATTTCCAGCACAGAGAGCGAGCTACAGCAGAGCTATGCCAAGCAGCGCCGGAGCAAGAGTGCTGCCCTCCTGCACAAGGAGCTGAACTGCAAGAGCAAGCGGGCTATCCGGGACTACCTCTTCCGTGTGAACGAGGCCACCTCAGTCCTATATGCTCGCCATGTGCTCGCCTCCCTGCTGGCCGAGTGGCCAGGGCATGTGCCAGTGAGTGAGGACATCCTGGAGCTTAGTGGCCCTGCACATATGACCTACATTCTGGATATGTTCATGCAGCTGGAAGAAAAGCACCAGTGGGAGAAGATCCTACAGAAAGTACTCCAGGGCTGCCGAGAGAACATGCTGGGCACCATGGCCTTGGCTGCCTGTCAGTTCATGGAGGAACCAGGAATGGAGGTGCAATGCAACACTGAGGAAGGCTGTGATGAACTAGCCATGTCCAGCAGTAGTGACTTTCAGCAGGACCGGCACAACTTCAGCGGGTCGCAACAGAAGTGGAAAGATTTTGAGCTTCCAGGAGATACTCTGTATTACCGATTTACCTCGGACATGAGCAACACTGAGTGGGGATACCGATTCACTGTGACAGCTGGACATCTGGGGCGGTTCCAGACAGGGTTTGAGATCTTGAAGCAGATGTTGTCTGAAGAAAGGGTTGTACCTCACCTCGCATTGGGCAAGATCTGGGAATGGCTGGTGGGTGTGGCCTGCCGCCAAACCGGTCATCAGCGCCTGAAAGCCATCCACTTACTACTGAGGATTGTGCAATGCTGCAGCCACAGCCGAGTGGGCCTGGACTGGGCCTGCTCCATGGCAGAGATCCTTCGGTCACTCAACAATGCCCCGTTGTGGCGAGATGTCATTGCCACCTTCACAGACCACTGCATCAAGCAGCTGCCATTCCAACTGAAGCACACCAACATCTTCACTCTGCTGGTGCTTGTCGGCTTCCCCCAGGTCCTCTGCGTGGGAACCCGCTGTGTTTATATGGATAATGCCAATGAACCCCATAATGTGATCATCTTGAAACACTTCACTGAGAAGAATAGAGCTGTGATTGTCGACGTCAAAACAAGGAAAAGGAAAACAGTGAAGGACTATCAGCTTGTCCAGAAGGGAGGAGGACAAGAGTGTGGCACCTCTCAGTCCCAGCTGAGCCAGTACTCCCAGCACTTTGCCTTTATTGCTAGTCACCTTCTGCAAACCAGCATGGATAGCCATTGTCCCGAGGCAGTGGAAGCAACCTGGGTCCTGTCCCTGGCTCTCAAAGGTTTATATAAAACACTAAAGGCTCATGGTTTTGAAGAGACCCATGCCACCTTCCTCCAGACCGATCTGCTAAAGCTGCTGGTGAAGAAGTGCAGCAAAGGGACCGGCTTCAGTAAAACCTGGCTCCTCCGAGACCTAGAGATTCTGTCCATCATGCTGTACTCGTCAAAAAAGGAGATCAACACTCTGGCTGAACATGGAGACCTGGAGCTAGATGAACGAGGAGACCAAGAAGAAGAACTGGACCGGCCAGTTAGTAGCCCTGGCGAAGCAGAACAGAAGAAGCTAGACCCTCTTGAAAATTTGGATGAACCCACCAGAATATGCTTCTTGATGGCTCATGATGCCCTCAATGCCCCTCTGCACATTCTCCGGGCCATATATGAACTGCAGATGAAAAAGACTGATTCGTTCTTCCTAGAGGTTCAGAAGAGGTTTGATGGGGATGAGCTCACTACAGATGAGAGGATTCGCTCCTTGGCCCAGAGGTGGCAACCCAGCAGGAGTCTGAGGCTGGAGGAGCAGAGCGCCAAAGCTGTGGACACAGACATGATTATCTTGCCATGCTTGTCCCGGCCTGCACGCTCTGACCAAGCCACTCCTGAATCAAATCCTGTGACCCAGAAGCTGATTTCCAGCACAGAGAGCGAGCTACAGCAGAGCTATGCCAAGCAGCGCCGGAGCAAGAGTGCTGCCCTCCTGCACAAGGAGCTGAACTGCAAGAGCAAGCGGGCTATCCGGGACTACCTCTTCCGTGTGAACGAGGCCACCTCAGTCCTATATGCTCGCCATGTGCTCGCCTCCCTGCTGGCCGAGTGGCCAGGGCATGTGCCAGTGAGTGAGGACATCCTGGAGCTTAGTGGCCCTGCACATATGACCTACATTCTGGATATGTTCATGCAGCTGGAAGAAAAGCACCAGTGGGAGAAGATCCTACAGAAAGTACTCCAGGGCTGCCGAGAGAACATGCTGGGCACCATGGCCTTGGCTGCCTGTCAGTTCATGGAGGAACCAGGAATGGAGGTGCAATGCAACACTGAGGAAGGCTGTGATGAACTAGCCATGTCCAGCAGTAGTGACTTTCAGCAGGACCGGCACAACTTCAGCGGGTCGCAACAGAAGTGGAAAGATTTTGAGCTTCCAGGAGATACTCTGTATTACCGATTTACCTCGGACATGAGCAACACTGAGTGGGGATACCGATTCACTGTGACAGCTGGACATCTGGGGCGGTTCCAGACAGGGTTTGAGATCTTGAAGCAGATGTTGTCTGAAGAAAGGGTTGTACCTCACCTCGCATTGGGCAAGATCTGGGAATGGCTGGTGGGTGTGGCCTGCCGCCAAACCGGTCATCAGCGCCTGAAAGCCATCCACTTACTACTGAGGATTGTGCAATGCTGCAGCCAC
Peptide sequence:
MAEILRSLNNAPLWRDVIATFTDHCIKQLPFQLKHTNIFTLLVLVGFPQVLCVGTRCVYMDNANEPHNVIILKHFTEKNRAVIVDVKTRKRKTVKDYQLVQKGGGQECGTSQSQLSQYSQHFAFIASHLLQTSMDSHCPEAVEATWVLSLALKGLYKTLKAHGFEETHATFLQTDLLKLLVKKCSKGTGFSKTWLLRDLEILSIMLYSSKKEINTLAEHGDLELDERGDQEEELDRPVSSPGEAEQKKLDPLENLDEPTRICFLMAHDALNAPLHILRAIYELQMKKTDSFFLEVQKRFDGDELTTDERIRSLAQRWQPSRSLRLEEQSAKAVDTDMIILPCLSRPARSDQATPESNPVTQKLISSTESELQQSYAKQRRSKSAALLHKELNCKSKRAIRDYLFRVNEATSVLYARHVLASLLAEWPGHVPVSEDILELSGPAHMTYILDMFMQLEEKHQWEKILQKVLQGCRENMLGTMALAACQFMEEPGMEVQCNTEEGCDELAMSSSSDFQQDRHNFSGSQQKWKDFELPGDTLYYRFTSDMSNTEWGYRFTVTAGHLGRFQTGFEILKQMLSEERVVPHLALGKIWEWLVGVACRQTGHQRLKAIHLLLRIVQCCSHSRVGLDWACSMAEILRSLNNAPLWRDVIATFTDHCIKQLPFQLKHTNIFTLLVLVGFPQVLCVGTRCVYMDNANEPHNVIILKHFTEKNRAVIVDVKTRKRKTVKDYQLVQKGGGQECGTSQSQLSQYSQHFAFIASHLLQTSMDSHCPEAVEATWVLSLALKGLYKTLKAHGFEETHATFLQTDLLKLLVKKCSKGTGFSKTWLLRDLEILSIMLYSSKKEINTLAEHGDLELDERGDQEEELDRPVSSPGEAEQKKLDPLENLDEPTRICFLMAHDALNAPLHILRAIYELQMKKTDSFFLEVQKRFDGDELTTDERIRSLAQRWQPSRSLRLEEQSAKAVDTDMIILPCLSRPARSDQATPESNPVTQKLISSTESELQQSYAKQRRSKSAALLHKELNCKSKRAIRDYLFRVNEATSVLYARHVLASLLAEWPGHVPVSEDILELSGPAHMTYILDMFMQLEEKHQWEKILQKVLQGCRENMLGTMALAACQFMEEPGMEVQCNTEEGCDELAMSSSSDFQQDRHNFSGSQQKWKDFELPGDTLYYRFTSDMSNTEWGYRFTVTAGHLGRFQTGFEILKQMLSEERVVPHLALGKIWEWLVGVACRQTGHQRLKAIHLLLRIVQCCSH
IRESfinder result
IRESfinder score
0.379639646
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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