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mmu_circZxdc_945
Basic information of circular RNA
PanCircBase ID:
mmu_circZxdc_945
mm39_Chr. Position ID:
chr6|90355765|90361234|+
Gene name:
Zxdc
Transcript:
ENSMUST00000075117.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
5,6,7
Exon/intron offsets:
0,3048,5384
Genomic length:
5469
Exon/intron sizes in nt:
171,689,85
Flanking exon/introns:
chr6:90350823-90355765|chr6:90361234-90375743
Splice length:
945
Other database IDs:
circAtlas: mmu-Zxdc_0003
circAtlas: hsa-ZXDC_0005, CIRCpedia: HSA_CIRCpedia_105430
Human Ortholog IDs:
Mature spliced Sequence:
GGTGCTGTGCCAGGTTCTCAGCTCGCAGCAGTCTGTACATTCATTCTAAGAAACATCTGCAGGACGTGGGTACTCCGAAAAGCCGCTGCCCAGTGTCCAGCTGCAACCGACTCTTCACCTCCAAGCATAGCATGAAGGCACACGTGGTGCGGCAGCACAGCCGGCGCCAAGATCTTGTACCTCAGCTGGAAGCTCCGAGCTCTCTCACACCCAGCAGTGAACTGAGTAGCCCAGGCCAAAGTGAGCTCACCAACATAGATCTCGCAGCACTTTTCTCTGACACACCTGCTAATAGCAGCAGTTCAACAGCTGGGTCGGATGAAGCACTGAACTCTGGGATCCTCACCATTGATGTCACTTCTGTGAGCTCTTCTCTGGGAGGGAATCTCCCTACTAACAATAACTCCTTAGGACCAATGGATCCACTCGTTCTAGTGGCCCACGGTGATATGCCTCCAAGTTTGGACAGTCCTCTTGTTCTTGGGACATCGGCCACGGTTCTCCAACCAGGCAGCTTCAGTGCAGATGATTCACAGGCCATGAGCACAGGAGCAGTAGGCTGCCTGGTGGCTCTGCCTGTGAGGAACTTGAATCAAGACTCTCCAGCTTTGACCCCCAGCAATAACTTGACAGCACCTGGTACCACACCAACTTCTTCAGACACCACCCAAGAAACTGGCAGTGTGCCAGATCTGCTGGTTCCAATAAAGGTGGAACAAGACTTGTCTCCTGTCCCAGATGTGGTCCAGGGGCAGAAAGAAAGCCATGGGCCATCCCAATCTGTGCTGTCCAGCTCTACAGAGAGGCCAGGGGCTCAGAAGGACTCAGAGCTCAGTGCTGGCACAGGCAGTCTCTACTTGGAAAGTGGGGGCTCAGCAAGAACTGATTACCGAGCCATTCAACTAGTCAAGAAAAAAAAGCAGAAAGGAACTGGGAGCGATGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGGGCTCAGCAAGAACTGAT
60.03
TTTTCGGAGTACCCACGTCC
59.68
159
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGGGCTCAGCAAGAACTGAT
60.03
GCTTTTCGGAGTACCCACGT
60.32
161
PCR template sequence:
GGCAGTCTCTACTTGGAAAGTGGGGGCTCAGCAAGAACTGATTACCGAGCCATTCAACTAGTCAAGAAAAAAAAGCAGAAAGGAACTGGGAGCGATGAAGGGTGCTGTGCCAGGTTCTCAGCTCGCAGCAGTCTGTACATTCATTCTAAGAAACATCTGCAGGACGTGGGTACTCCGAAAAGCCGCTGCCCAGTGTCCAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-93-5p(1), mmu-miR-135a-5p(1), mmu-miR-106b-5p(1), mmu-miR-33-5p(1), mmu-miR-676-3p(1), mmu-miR-22-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GGGAGCGATGAAGGGTGCTGTGCCAG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCZXDC_945_ORF_1
0.9644
0.201346778
0.999955308
1758
ORF sequence:
ATGAAGGCACACGTGGTGCGGCAGCACAGCCGGCGCCAAGATCTTGTACCTCAGCTGGAAGCTCCGAGCTCTCTCACACCCAGCAGTGAACTGAGTAGCCCAGGCCAAAGTGAGCTCACCAACATAGATCTCGCAGCACTTTTCTCTGACACACCTGCTAATAGCAGCAGTTCAACAGCTGGGTCGGATGAAGCACTGAACTCTGGGATCCTCACCATTGATGTCACTTCTGTGAGCTCTTCTCTGGGAGGGAATCTCCCTACTAACAATAACTCCTTAGGACCAATGGATCCACTCGTTCTAGTGGCCCACGGTGATATGCCTCCAAGTTTGGACAGTCCTCTTGTTCTTGGGACATCGGCCACGGTTCTCCAACCAGGCAGCTTCAGTGCAGATGATTCACAGGCCATGAGCACAGGAGCAGTAGGCTGCCTGGTGGCTCTGCCTGTGAGGAACTTGAATCAAGACTCTCCAGCTTTGACCCCCAGCAATAACTTGACAGCACCTGGTACCACACCAACTTCTTCAGACACCACCCAAGAAACTGGCAGTGTGCCAGATCTGCTGGTTCCAATAAAGGTGGAACAAGACTTGTCTCCTGTCCCAGATGTGGTCCAGGGGCAGAAAGAAAGCCATGGGCCATCCCAATCTGTGCTGTCCAGCTCTACAGAGAGGCCAGGGGCTCAGAAGGACTCAGAGCTCAGTGCTGGCACAGGCAGTCTCTACTTGGAAAGTGGGGGCTCAGCAAGAACTGATTACCGAGCCATTCAACTAGTCAAGAAAAAAAAGCAGAAAGGAACTGGGAGCGATGAAGGGTGCTGTGCCAGGTTCTCAGCTCGCAGCAGTCTGTACATTCATTCTAAGAAACATCTGCAGGACGTGGGTACTCCGAAAAGCCGCTGCCCAGTGTCCAGCTGCAACCGACTCTTCACCTCCAAGCATAGCATGAAGGCACACGTGGTGCGGCAGCACAGCCGGCGCCAAGATCTTGTACCTCAGCTGGAAGCTCCGAGCTCTCTCACACCCAGCAGTGAACTGAGTAGCCCAGGCCAAAGTGAGCTCACCAACATAGATCTCGCAGCACTTTTCTCTGACACACCTGCTAATAGCAGCAGTTCAACAGCTGGGTCGGATGAAGCACTGAACTCTGGGATCCTCACCATTGATGTCACTTCTGTGAGCTCTTCTCTGGGAGGGAATCTCCCTACTAACAATAACTCCTTAGGACCAATGGATCCACTCGTTCTAGTGGCCCACGGTGATATGCCTCCAAGTTTGGACAGTCCTCTTGTTCTTGGGACATCGGCCACGGTTCTCCAACCAGGCAGCTTCAGTGCAGATGATTCACAGGCCATGAGCACAGGAGCAGTAGGCTGCCTGGTGGCTCTGCCTGTGAGGAACTTGAATCAAGACTCTCCAGCTTTGACCCCCAGCAATAACTTGACAGCACCTGGTACCACACCAACTTCTTCAGACACCACCCAAGAAACTGGCAGTGTGCCAGATCTGCTGGTTCCAATAAAGGTGGAACAAGACTTGTCTCCTGTCCCAGATGTGGTCCAGGGGCAGAAAGAAAGCCATGGGCCATCCCAATCTGTGCTGTCCAGCTCTACAGAGAGGCCAGGGGCTCAGAAGGACTCAGAGCTCAGTGCTGGCACAGGCAGTCTCTACTTGGAAAGTGGGGGCTCAGCAAGAACTGATTACCGAGCCATTCAACTAGTCAAGAAAAAAAAGCAGAAAGGAACTGGGAGCGATGAA
Peptide sequence:
MKAHVVRQHSRRQDLVPQLEAPSSLTPSSELSSPGQSELTNIDLAALFSDTPANSSSSTAGSDEALNSGILTIDVTSVSSSLGGNLPTNNNSLGPMDPLVLVAHGDMPPSLDSPLVLGTSATVLQPGSFSADDSQAMSTGAVGCLVALPVRNLNQDSPALTPSNNLTAPGTTPTSSDTTQETGSVPDLLVPIKVEQDLSPVPDVVQGQKESHGPSQSVLSSSTERPGAQKDSELSAGTGSLYLESGGSARTDYRAIQLVKKKKQKGTGSDEGCCARFSARSSLYIHSKKHLQDVGTPKSRCPVSSCNRLFTSKHSMKAHVVRQHSRRQDLVPQLEAPSSLTPSSELSSPGQSELTNIDLAALFSDTPANSSSSTAGSDEALNSGILTIDVTSVSSSLGGNLPTNNNSLGPMDPLVLVAHGDMPPSLDSPLVLGTSATVLQPGSFSADDSQAMSTGAVGCLVALPVRNLNQDSPALTPSNNLTAPGTTPTSSDTTQETGSVPDLLVPIKVEQDLSPVPDVVQGQKESHGPSQSVLSSSTERPGAQKDSELSAGTGSLYLESGGSARTDYRAIQLVKKKKQKGTGSDE
IRESfinder result
IRESfinder score
0.584425114
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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