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mmu_circZpbp_495
Basic information of circular RNA
PanCircBase ID:
mmu_circZpbp_495
mm39_Chr. Position ID:
chr11|11358388|11368287|-
Gene name:
Zpbp
Transcript:
ENSMUST00000020413.4
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
5,4,3
Exon/intron offsets:
0,6799,9773
Genomic length:
9899
Exon/intron sizes in nt:
21,91,50,126
Flanking exon/introns:
chr11:11354057-11358388|chr11:11368287-11409698
Splice length:
495
Other database IDs:
CIRCpedia: MMU_CIRCpedia_229777, circAtlas: mmu-Zpbp_0010
circBase: hsa_circ_0134419
Human Ortholog IDs:
Mature spliced Sequence:
TGAGCGTATATGTTATGCTTCATCAAAAGAGTCCACATGTGCTATGTGTAACCCAACGACTGAGAAATACAGAGCTGGTAGACCCATCATTCCAATGGCATGGGCCAAAAGGAAAACTTGTTTCAGAAAATACCACTGCACAAGTGACCTCCACAGGAAGCCTCATATTTCAGAGCTTTGAAGAGACCATGAGTGGGGTTTATACATGTTTCCTCGAGTATAAACCAACTGTAGAGGAATCTATTAAAAATCTTCAACTGAAATACATTGTTTATGCTTATCGTGAACCTCGGTTTTATTATCAGTTCACAGCTCGATACCATGCAGCTCCCTGCAACAGTATCTATAACATTTCTTTTGAGAAGAAACTTCTTCAGATTTTAAGTAAGCTGGTTCTTGACCTTTCCTGTGAAATATCCTTGATTAAGTCTGAATGCCATCGTGTTAAAATGCAAAGAGCTGGTTTGCAAAATGAATTGTTCTTCACATTTTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGTCTGAATGCCATCGTGTT
57.52
TGCCATTGGAATGATGGGTCT
59.71
169
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGTCTGAATGCCATCGTGT
57.52
TGCCATTGGAATGATGGGTCT
59.71
170
PCR template sequence:
CTTGACCTTTCCTGTGAAATATCCTTGATTAAGTCTGAATGCCATCGTGTTAAAATGCAAAGAGCTGGTTTGCAAAATGAATTGTTCTTCACATTTTCAGTGAGCGTATATGTTATGCTTCATCAAAAGAGTCCACATGTGCTATGTGTAACCCAACGACTGAGAAATACAGAGCTGGTAGACCCATCATTCCAATGGCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
TTCACATTTTCAGTGAGCGTATATGT
siRNA sets
ATATACGCTCACTGAAAAT, TATACGCTCACTGAAAATG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCZPBP_495_ORF_1
0.7377
-0.076950688
0.944112065
975
ORF sequence:
ATGCTTCATCAAAAGAGTCCACATGTGCTATGTGTAACCCAACGACTGAGAAATACAGAGCTGGTAGACCCATCATTCCAATGGCATGGGCCAAAAGGAAAACTTGTTTCAGAAAATACCACTGCACAAGTGACCTCCACAGGAAGCCTCATATTTCAGAGCTTTGAAGAGACCATGAGTGGGGTTTATACATGTTTCCTCGAGTATAAACCAACTGTAGAGGAATCTATTAAAAATCTTCAACTGAAATACATTGTTTATGCTTATCGTGAACCTCGGTTTTATTATCAGTTCACAGCTCGATACCATGCAGCTCCCTGCAACAGTATCTATAACATTTCTTTTGAGAAGAAACTTCTTCAGATTTTAAGTAAGCTGGTTCTTGACCTTTCCTGTGAAATATCCTTGATTAAGTCTGAATGCCATCGTGTTAAAATGCAAAGAGCTGGTTTGCAAAATGAATTGTTCTTCACATTTTCAGTGAGCGTATATGTTATGCTTCATCAAAAGAGTCCACATGTGCTATGTGTAACCCAACGACTGAGAAATACAGAGCTGGTAGACCCATCATTCCAATGGCATGGGCCAAAAGGAAAACTTGTTTCAGAAAATACCACTGCACAAGTGACCTCCACAGGAAGCCTCATATTTCAGAGCTTTGAAGAGACCATGAGTGGGGTTTATACATGTTTCCTCGAGTATAAACCAACTGTAGAGGAATCTATTAAAAATCTTCAACTGAAATACATTGTTTATGCTTATCGTGAACCTCGGTTTTATTATCAGTTCACAGCTCGATACCATGCAGCTCCCTGCAACAGTATCTATAACATTTCTTTTGAGAAGAAACTTCTTCAGATTTTAAGTAAGCTGGTTCTTGACCTTTCCTGTGAAATATCCTTGATTAAGTCTGAATGCCATCGTGTTAAAATGCAAAGAGCTGGTTTGCAAAATGAATTGTTCTTCACATTTTCA
Peptide sequence:
MLHQKSPHVLCVTQRLRNTELVDPSFQWHGPKGKLVSENTTAQVTSTGSLIFQSFEETMSGVYTCFLEYKPTVEESIKNLQLKYIVYAYREPRFYYQFTARYHAAPCNSIYNISFEKKLLQILSKLVLDLSCEISLIKSECHRVKMQRAGLQNELFFTFSVSVYVMLHQKSPHVLCVTQRLRNTELVDPSFQWHGPKGKLVSENTTAQVTSTGSLIFQSFEETMSGVYTCFLEYKPTVEESIKNLQLKYIVYAYREPRFYYQFTARYHAAPCNSIYNISFEKKLLQILSKLVLDLSCEISLIKSECHRVKMQRAGLQNELFFTFS
IRESfinder result
IRESfinder score
0.872452386
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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