top of page
mmu_circZfp462_6009
Basic information of circular RNA
PanCircBase ID:
mmu_circZfp462_6009
mm39_Chr. Position ID:
chr4|55007532|55014847|+
Gene name:
Zfp462
Transcript:
ENSMUST00000098070.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
2,3,4
Exon/intron offsets:
0,723,7150
Genomic length:
7315
Exon/intron sizes in nt:
250,5594,165
Flanking exon/introns:
chr4:54948232-55007532|chr4:55014847-55016996
Splice length:
6009
Other database IDs:
circAtlas: mmu-Zfp462_0028
Human Ortholog IDs:
Mature spliced Sequence:
GTTCCTGATGTGAGAGGGTAGCCCCCGATCATGGAGGTGCTTCAGTGCGATGGCTGTGACTTCCGAGCCCCATCTTACGAAGATCTCAAGGCACACATCCAGGATGTCCACACGGCATTCTTACAGCCAACTGATGTTGCCGAGGACAATGATGACGAGCCACTATCTGGGTCCATGAATGCTAGTAATCAGACAGAGGTGGAGTTCTCTTCTATAAAGGATGAGTTTGTGATTGCAGAGGATTTACCAGGTCAAAGTGCAACTGCGTTGGGGAGCGGAGGTTACTATGGCCACAGTCCAGGATATTACGGTCAGCATATTACCCCTAATCCCAAACCAACCAACAAATTTTTTCAGTGCAAGTTCTGCGTACGCTACTTCAGGTCAAAAAATCTCCTCATAGAACATACTAGGAAGGTCCATGGAGCTCAAGCTGAAGAGAGTCCCACAGGACCTCCTGTCCCAGGATCCTTAAATTATAATATCATGATGCACGAAGGATTTGGAAAGGTCTTTTCTTGCCAGTTTTGCACATACAAATCACCTCGGAGGGCAAGGATAATTAAGCATCAGAAGATGTACCACAAAAACAGTCTGAAGGAGTCCACAGCGCCACCACCTGCCCCTGCTCCACTGCCAGACCCTCTGGTTCCACCTGTGTCACTGCAGGACCCCTGCAAGGAACTGCCGGCAGAGGTTGTTGAGCGCAGCATCTTAGAATCTATGGTCAAGCCTTTGACCAAGTCTCGGGGCAACTTTTGTTGTGAGTGGTGTAGCTACCAGACCCCCCGCAGAGAACGCTGGTGCGATCACATGATGAAGAAACACCGCAGTATGGTCAAGATCCTTTCTAGCATCCGGCAGCAAGAAGGGCCTAATGTCTCTGAAGCGCAGAATGATAATGAACCCAGCCCCACCTCCAACTCCACCTACCTGTCCATGAATGCTGCGAGCCGGGAGATGCCCAACGCTAACGTCTCCAATTTCAGGGGCTCCATGGGCAACTCCATCATGAGACCTAATTCTTCTTCAACTTCCAAGTTTTCTTCTTCTATGTCTTACCCTCAGATGAAGCCGAAGTCACCTCATAATTCTGGCCTTGTGAACTTGACGGAGAGGTCCCGTTACGGAATGTCTGACATGACGAATTCATCTGCTGACCTGGACACTAACAGCATGCTAAATGACTCTAGCTCTGATGAGGACTTAAATGAGGTAGACAGTGAGAATGGTTTAAGTGTTCTGGATCACCAGGCGTCAGGACTGTCTGCAGAGCAGCTCATGGGCTCTGATGGCAACAAGCTGTTAGAGACCAAGGGGATTCCATTTCGAAGGTTCATGAATAGATTCCAGTGTCCCTTTTGTCCTTTCCTCACCATGCACCGCCGTAGCATTTCCCGCCACATAGAAAATATCCACTTATCTGGAAAGACCGCTGTCTACAAATGTGACGAGTGTCCGTTTACTTGTAAGAGCTCATTAAAACTCGGGGCTCATAAACAGTGTCACACGGGTACGTCGGATTGGGATACTGTGAATTCTCAAAGCGAAAGCCTGTCTTCCTCGTTGAATGAAGGAATGGTATCTTACGAGAGCTCCAGCATCAATGGTAGAAAGTCGGGAGTCATGTTGGACCCCTTACAGCAGCAGCAGCCACCACAGCCACCTCCGCCACTACCACCACCACCACCACCACCATCACAGCCACTGCCGCAGCCTCCACCTCCACCGCTGCAGTCACCACACCAGGTGCCACCACCAACCCAGCAGCCACAGCCACCCACACAGGCCCCACCTTTGCACCCTTACAAGTGCACCATGTGTAGTTATTCCACCATGACTCTGAAAGGGCTAAGAGTCCATCAGCAGCACAAACATTCATTCTGCGACAACTTGCCAAAATTCGAGGGGCAGCCCTCGAGCCTACCACTGGAAAATGAGACGGATAGCCACCCCTCTTCCAGCAACACTGTGAAGAAAAGTCAGACCTCAATTCTTGGATTGTCCTCCAAGAATAACTTTGTAGCTAAGGCCAATAGGAAGCTTGCTAGTGACTTTCCTCTTGACTTATCACCTGTGAAGAAGAGAACAAGGATTGACGAGATAGCCAGCAATTTGCAGAGCAAAATCAACCAGACCAAACTGCAGGAAGACGCGATCATCAACGTCGAGGACGATGAGGAGGAAGAGGATGACAACGAAGTCGAGATCGAGGTTGAACTGGACAGGGAGGAGGAGGCAACGGACCCCATCATGGAGGTGCCCACTGCCTTTTCAGCCCAACAGATCTGGGCCAGAGACGCTAGTGAGGCCCAGAAGGAGCCCAACTACAGAAGTATCACTCATGATTACACTGCCACCAATGGGGCGGAGATCGAGCTCACGCTTTCTGAAGACGAAGAGGATTACTACGGCTCTTCAGCAAGCATGAAAGATCAAGTGTCCAATGCGGCTCTGCTGAACACCCAGCCCGCTATCTATGGGACGGAACCCAGTAATGAAAATACCGATTTTGGGGACTCTGGAAGGCTTTACTATTGTAAACACTGTGACTTTAATAATAAATCTGCCCGGAGTGTTAGCACCCACTACCAGCGAATGCACCCATACATTAAGTTCAGCTTTAGGTATATCTTGGACCCCAATGATCACAGCGCAGTGTACAGGTGCCTGGAATGCTATATTGACTACACCAACTTTGAAGACCTCCAACAGCATTATGGTGAACACCACCCAGAGGCCATGAATGTACTCAACTTTGACCATTCGGACCTGATCTACCGATGTCGGTTTTGTTCTTACACTAGCCCGAATGTCAGAAGCCTGATGCCGCATTACCAAAGAATGCATCCCACGGTGAAAATCAACAATGCTATGATCTTTTCAAGCTACGTTGTAGAGCAGCAGGAAGGGCTGAATGCTGAGTCCCAGACCCTGCGGGAGATTTTGAATTCAGCTCCCAAGAGCATGGCGACGTCCACGCCTGTGGCTCGCGGTGGTGGCTTGCCAGCTACGTTTAACAAAAACACTCCTCCCAAGACCTTTACTCCAGAATGTGAAAGCCAGAAGGACCCTTCAGTGAACACCGTTGTCGTTTACGATTGTGACGTTTGCTCGTTTGCGAGCCCCAACATGCACTCTGTCTTGGTTCACTATCAGAAGAAACACCCTGAAGAAAAGGCCTCGTACTTTAGGATCCAGAAAACCATGCGCATGGTGTCTGTGGACAGAGGCTCTGCCCTTTCCCAATTATCATTTGAGGTGGGTGCTCCAATGTCTCCCAAAATGTCCAACATGGGTTCCCCACCCCCCCCACAGCCCCCGCCACCAGACCTCAGTATTGAGCTTTACTACTGCAAACACTGCTCCTACAGCAATCGGTCAGTTGTGGGGGTGCTTGTTCACTACCAGAAAAGACACCCAGAAATAAAGGTCACTGCCAAATATATCAGACAGGCTCCTCCCACAGCTGCAATGATGAGAGGGGCTGAAGGGCTCCAAGATTCCCCTCGGCCTCCTGCTCCCTTGCAGCTGAACAGTTCTGAGAGAGATTGCCCTCCTGTGGAGACTGAGATGTTTTTTTGCCAGCACTGTGATTATGGGAACCGGACGGTCAAAGGCGTCCTCATTCATTATCAGAAGAAGCACCGGGACTTCAAGGCCAATGCCGATGTGATCAGGCAGCACACAGCCACCATCCGAAGCCTCTGTGACCGGAACCAGAAGCCTGCCAGCTGTGTGCTTCTCCCTGCTTCCGGTATGGAGCGGGACAAAACGAAACTTCGAGCGCTCAAATGTAGGCAGTGCTCGTATACCTCCCCCTATTTCTATGCACTGAGGAAGCATATCAAGAAAGACCACCCTGCCCTGAAGGCCACAGTCACGTCCATCATGCGGTGGGCATTTCTAGATGGCTTGATAGAAGCTGGCTACCACTGCGAGTGGTGTATCTACTCCCACATGGAGCCCAGTGGTTTGCTCCTGCATTATCAGAGGAGACACCCTGAGCATTATGTAGATTATACTTATATGGCTACCAAACTCTGGGCTGGGCCAGACCCATCCTCTCCCACTCTTACCATGTCAGCTGAAGCCAAAACATACAGATGCAGGGACTGCGTTTTTGAAGCCGTCTCCATCTGGGACATCACAAACCATTACCAAGCGTTCCACCCCTGGGCCATGAATGGTGATGAGTCTGTGTTGCTGGATATCATCAAGGAGAAAGACGGTGTAGACAAGGCCCTCCTGGCACCTGAAGAGTTGATAGGCCCTGTGAATTGTGAAAATAGTATACCCAACCCCCTTCCCGAGCAGGAAGCTGAGTGCCCAGAGGATGCAAGACTTTCCCCAGAGAAAAGCATTCATCTGGCTTCAGCTAACCCTGCTATATCTTCCACCCCATACCAGTGTACAGTGTGCCAGTCCGAGTACAACAACTTGCACGGCCTCCTCACCCATTACGGGAAGAAGCATCCTGGTATGAAAGTGAAGGCTGCTGATTTTGCCCAGGATATTGACATCAACCCAGGTGCCGTCTACAAATGCAGGCATTGTCCGTACATCAACACTCGCATCCATGGCGTCCTGACCCACTATCAGAAGCGACACCCGGCCATCAAGGTGACCGCTGAGGACTTTGTGCATGATGTGGAGCAGTCTGCTGACATATCCCAGAATGACGTGGAGGAGACAAGTAGGATTTTTAAACAAGGGTATGGTGCCTACCGGTGCAAGCTGTGTCCTTACACACACGGCACTCTGGAGAAACTCAAAATCCACTATGAGAAGTACCACAACCAGCCTGAGTTTGATGTCTTTTCCCCGCCTCCTCCGAAGCTGCCAGTGTCCCTTGAACCTGAGATAACCACTGAAGTGAGCCCCTCCCAGGTCTCCGTGACGGAGGAGGAGGTGGGAGAGGATCCTATGTCCACTGCTCACTTCTCTACCTCGCATCTGGTCTCCCACACTGTGTTCCGGTGCCAGCTCTGCAAGTACTTCTGTTCCACTAGGAAGGGCATTGCCAGGCACTACCGGATCAAGCACAATAATGTCCGTGCCCAGCCCGAGGGCAAAAACAATCTCTTCAAGTGTGCCCTGTGTGCCTACACCAACCCCATCCGCAAGGGACTGGCAGCCCACTACCAGAAGCGCCACGACATTGATGCATATTACACCCACTGCCTTGCGGCCTCCAGGACCATCAGTGACAAGCCCAACAAGGTGATCATCCCATCCCCACCCAAAGATGACTCTCCTCAGCTGAGCGAGGAACTCCGGCGGGCTGTGGAGAAGAAAAAGTGCTCCTTATGTTCCTTCCAGTCCTTCAGCAAGAAAGGCATTGTGTCCCATTATATGAAGCGCCACCCGGGGGTGTTCCCAAAGAAGCAGCATGCCAGCAAGTTGGGGGGCTACTTCACAGCGGTCTACGCAGATGAACACGAGAAACCCCCACTGATGGAAGAAGAGGAGAGAAGCAGCTTTGAGAGGGCCGAGGTGGAAGGCGAAGCTCAAGACATCGAGTGGCTCCCGTTCCGCTGCATCAAATGCTTCAAGCTGTCCTTCAGCACGGCGGAGTTGCTGTGCATGCATTACACAGACCACCACAGCAGGGACTTAAAGAGGGACTTCGTCATCCTAGGCAGCGGCCCCCGCTTCCAGAACTCCACCTTCCAGTGTAAGCACTGTGATAGCAAATTGCAAAGCATAGCCGAGCTGACCTCACACTTGAACATCCACAATGAGGAATTCCAGAAGCGTGCCAAACGCCAGGAGAGGAGGAAACAGCTTTTGAGCAAGCAGAAATATGCAGATGGTGCTTTTGCAGATTTCAAACAAGAGAGGCCTTTTGGTCACTTAGAAGAGGTGCCAAAGATCAAGGAGAGGAAAGTGGTGGGCTACAAGTGTAAATTCTGCGTGGAAGTGCATCCAACGCTTCGGGCCATCTGTAACCACCTCCGGAAACATGTCCAGTATGGTAGCGTCCCGGCTGTGTCGGCTGCTGTGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTCGGGCCATCTGTAACCAC
60.04
CGTAAGATGGGGCTCGGAAG
60.25
153
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGCCATCTGTAACCACCTCC
60.11
CGTAAGATGGGGCTCGGAAG
60.25
149
PCR template sequence:
ATTCTGCGTGGAAGTGCATCCAACGCTTCGGGCCATCTGTAACCACCTCCGGAAACATGTCCAGTATGGTAGCGTCCCGGCTGTGTCGGCTGCTGTGAAGGTTCCTGATGTGAGAGGGTAGCCCCCGATCATGGAGGTGCTTCAGTGCGATGGCTGTGACTTCCGAGCCCCATCTTACGAAGATCTCAAGGCACACATCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
55
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-155-5p(1), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-7b-5p(1), mmu-miR-429-3p(1), mmu-miR-181a-5p(1), mmu-miR-103-3p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-19b-3p(1), mmu-miR-205-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-19a-3p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-217-5p(1), mmu-miR-7a-5p(1), mmu-miR-320-3p(1), mmu-miR-326-3p(1), mmu-miR-138-5p(1), mmu-miR-181b-5p(1), mmu-miR-433-3p(1), mmu-miR-182-5p(1), mmu-miR-218-5p(1), mmu-miR-382-5p(1), mmu-miR-370-3p(1), mmu-miR-362-5p(1), mmu-miR-34b-5p(1), mmu-miR-297a-5p(1), mmu-miR-107-3p(1), mmu-miR-224-5p(1), mmu-miR-98-5p(1), mmu-miR-705(1), mmu-miR-680(1), mmu-miR-384-3p(1), mmu-miR-802-5p(1), mmu-miR-1187(1), mmu-miR-190b-5p(1), mmu-miR-129-5p(1), mmu-miR-207(1), mmu-miR-673-5p(1), mmu-miR-5101(1), mmu-miR-335-3p(1), mmu-miR-532-5p(1), mmu-miR-3065-5p(1), mmu-miR-350-3p(1), mmu-miR-697(1), mmu-miR-1904(1), mmu-miR-202-3p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GGCTGCTGTGAAGGTTCCTGATGTGA
siRNA sets
ATCAGGAACCTTCACAGCA, CATCAGGAACCTTCACAGC, ACATCAGGAACCTTCACAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCZFP462_6009_ORF_1
0.9321
0.287185895
1
6000
ORF sequence:
ATGGAGGTGCTTCAGTGCGATGGCTGTGACTTCCGAGCCCCATCTTACGAAGATCTCAAGGCACACATCCAGGATGTCCACACGGCATTCTTACAGCCAACTGATGTTGCCGAGGACAATGATGACGAGCCACTATCTGGGTCCATGAATGCTAGTAATCAGACAGAGGTGGAGTTCTCTTCTATAAAGGATGAGTTTGTGATTGCAGAGGATTTACCAGGTCAAAGTGCAACTGCGTTGGGGAGCGGAGGTTACTATGGCCACAGTCCAGGATATTACGGTCAGCATATTACCCCTAATCCCAAACCAACCAACAAATTTTTTCAGTGCAAGTTCTGCGTACGCTACTTCAGGTCAAAAAATCTCCTCATAGAACATACTAGGAAGGTCCATGGAGCTCAAGCTGAAGAGAGTCCCACAGGACCTCCTGTCCCAGGATCCTTAAATTATAATATCATGATGCACGAAGGATTTGGAAAGGTCTTTTCTTGCCAGTTTTGCACATACAAATCACCTCGGAGGGCAAGGATAATTAAGCATCAGAAGATGTACCACAAAAACAGTCTGAAGGAGTCCACAGCGCCACCACCTGCCCCTGCTCCACTGCCAGACCCTCTGGTTCCACCTGTGTCACTGCAGGACCCCTGCAAGGAACTGCCGGCAGAGGTTGTTGAGCGCAGCATCTTAGAATCTATGGTCAAGCCTTTGACCAAGTCTCGGGGCAACTTTTGTTGTGAGTGGTGTAGCTACCAGACCCCCCGCAGAGAACGCTGGTGCGATCACATGATGAAGAAACACCGCAGTATGGTCAAGATCCTTTCTAGCATCCGGCAGCAAGAAGGGCCTAATGTCTCTGAAGCGCAGAATGATAATGAACCCAGCCCCACCTCCAACTCCACCTACCTGTCCATGAATGCTGCGAGCCGGGAGATGCCCAACGCTAACGTCTCCAATTTCAGGGGCTCCATGGGCAACTCCATCATGAGACCTAATTCTTCTTCAACTTCCAAGTTTTCTTCTTCTATGTCTTACCCTCAGATGAAGCCGAAGTCACCTCATAATTCTGGCCTTGTGAACTTGACGGAGAGGTCCCGTTACGGAATGTCTGACATGACGAATTCATCTGCTGACCTGGACACTAACAGCATGCTAAATGACTCTAGCTCTGATGAGGACTTAAATGAGGTAGACAGTGAGAATGGTTTAAGTGTTCTGGATCACCAGGCGTCAGGACTGTCTGCAGAGCAGCTCATGGGCTCTGATGGCAACAAGCTGTTAGAGACCAAGGGGATTCCATTTCGAAGGTTCATGAATAGATTCCAGTGTCCCTTTTGTCCTTTCCTCACCATGCACCGCCGTAGCATTTCCCGCCACATAGAAAATATCCACTTATCTGGAAAGACCGCTGTCTACAAATGTGACGAGTGTCCGTTTACTTGTAAGAGCTCATTAAAACTCGGGGCTCATAAACAGTGTCACACGGGTACGTCGGATTGGGATACTGTGAATTCTCAAAGCGAAAGCCTGTCTTCCTCGTTGAATGAAGGAATGGTATCTTACGAGAGCTCCAGCATCAATGGTAGAAAGTCGGGAGTCATGTTGGACCCCTTACAGCAGCAGCAGCCACCACAGCCACCTCCGCCACTACCACCACCACCACCACCACCATCACAGCCACTGCCGCAGCCTCCACCTCCACCGCTGCAGTCACCACACCAGGTGCCACCACCAACCCAGCAGCCACAGCCACCCACACAGGCCCCACCTTTGCACCCTTACAAGTGCACCATGTGTAGTTATTCCACCATGACTCTGAAAGGGCTAAGAGTCCATCAGCAGCACAAACATTCATTCTGCGACAACTTGCCAAAATTCGAGGGGCAGCCCTCGAGCCTACCACTGGAAAATGAGACGGATAGCCACCCCTCTTCCAGCAACACTGTGAAGAAAAGTCAGACCTCAATTCTTGGATTGTCCTCCAAGAATAACTTTGTAGCTAAGGCCAATAGGAAGCTTGCTAGTGACTTTCCTCTTGACTTATCACCTGTGAAGAAGAGAACAAGGATTGACGAGATAGCCAGCAATTTGCAGAGCAAAATCAACCAGACCAAACTGCAGGAAGACGCGATCATCAACGTCGAGGACGATGAGGAGGAAGAGGATGACAACGAAGTCGAGATCGAGGTTGAACTGGACAGGGAGGAGGAGGCAACGGACCCCATCATGGAGGTGCCCACTGCCTTTTCAGCCCAACAGATCTGGGCCAGAGACGCTAGTGAGGCCCAGAAGGAGCCCAACTACAGAAGTATCACTCATGATTACACTGCCACCAATGGGGCGGAGATCGAGCTCACGCTTTCTGAAGACGAAGAGGATTACTACGGCTCTTCAGCAAGCATGAAAGATCAAGTGTCCAATGCGGCTCTGCTGAACACCCAGCCCGCTATCTATGGGACGGAACCCAGTAATGAAAATACCGATTTTGGGGACTCTGGAAGGCTTTACTATTGTAAACACTGTGACTTTAATAATAAATCTGCCCGGAGTGTTAGCACCCACTACCAGCGAATGCACCCATACATTAAGTTCAGCTTTAGGTATATCTTGGACCCCAATGATCACAGCGCAGTGTACAGGTGCCTGGAATGCTATATTGACTACACCAACTTTGAAGACCTCCAACAGCATTATGGTGAACACCACCCAGAGGCCATGAATGTACTCAACTTTGACCATTCGGACCTGATCTACCGATGTCGGTTTTGTTCTTACACTAGCCCGAATGTCAGAAGCCTGATGCCGCATTACCAAAGAATGCATCCCACGGTGAAAATCAACAATGCTATGATCTTTTCAAGCTACGTTGTAGAGCAGCAGGAAGGGCTGAATGCTGAGTCCCAGACCCTGCGGGAGATTTTGAATTCAGCTCCCAAGAGCATGGCGACGTCCACGCCTGTGGCTCGCGGTGGTGGCTTGCCAGCTACGTTTAACAAAAACACTCCTCCCAAGACCTTTACTCCAGAATGTGAAAGCCAGAAGGACCCTTCAGTGAACACCGTTGTCGTTTACGATTGTGACGTTTGCTCGTTTGCGAGCCCCAACATGCACTCTGTCTTGGTTCACTATCAGAAGAAACACCCTGAAGAAAAGGCCTCGTACTTTAGGATCCAGAAAACCATGCGCATGGTGTCTGTGGACAGAGGCTCTGCCCTTTCCCAATTATCATTTGAGGTGGGTGCTCCAATGTCTCCCAAAATGTCCAACATGGGTTCCCCACCCCCCCCACAGCCCCCGCCACCAGACCTCAGTATTGAGCTTTACTACTGCAAACACTGCTCCTACAGCAATCGGTCAGTTGTGGGGGTGCTTGTTCACTACCAGAAAAGACACCCAGAAATAAAGGTCACTGCCAAATATATCAGACAGGCTCCTCCCACAGCTGCAATGATGAGAGGGGCTGAAGGGCTCCAAGATTCCCCTCGGCCTCCTGCTCCCTTGCAGCTGAACAGTTCTGAGAGAGATTGCCCTCCTGTGGAGACTGAGATGTTTTTTTGCCAGCACTGTGATTATGGGAACCGGACGGTCAAAGGCGTCCTCATTCATTATCAGAAGAAGCACCGGGACTTCAAGGCCAATGCCGATGTGATCAGGCAGCACACAGCCACCATCCGAAGCCTCTGTGACCGGAACCAGAAGCCTGCCAGCTGTGTGCTTCTCCCTGCTTCCGGTATGGAGCGGGACAAAACGAAACTTCGAGCGCTCAAATGTAGGCAGTGCTCGTATACCTCCCCCTATTTCTATGCACTGAGGAAGCATATCAAGAAAGACCACCCTGCCCTGAAGGCCACAGTCACGTCCATCATGCGGTGGGCATTTCTAGATGGCTTGATAGAAGCTGGCTACCACTGCGAGTGGTGTATCTACTCCCACATGGAGCCCAGTGGTTTGCTCCTGCATTATCAGAGGAGACACCCTGAGCATTATGTAGATTATACTTATATGGCTACCAAACTCTGGGCTGGGCCAGACCCATCCTCTCCCACTCTTACCATGTCAGCTGAAGCCAAAACATACAGATGCAGGGACTGCGTTTTTGAAGCCGTCTCCATCTGGGACATCACAAACCATTACCAAGCGTTCCACCCCTGGGCCATGAATGGTGATGAGTCTGTGTTGCTGGATATCATCAAGGAGAAAGACGGTGTAGACAAGGCCCTCCTGGCACCTGAAGAGTTGATAGGCCCTGTGAATTGTGAAAATAGTATACCCAACCCCCTTCCCGAGCAGGAAGCTGAGTGCCCAGAGGATGCAAGACTTTCCCCAGAGAAAAGCATTCATCTGGCTTCAGCTAACCCTGCTATATCTTCCACCCCATACCAGTGTACAGTGTGCCAGTCCGAGTACAACAACTTGCACGGCCTCCTCACCCATTACGGGAAGAAGCATCCTGGTATGAAAGTGAAGGCTGCTGATTTTGCCCAGGATATTGACATCAACCCAGGTGCCGTCTACAAATGCAGGCATTGTCCGTACATCAACACTCGCATCCATGGCGTCCTGACCCACTATCAGAAGCGACACCCGGCCATCAAGGTGACCGCTGAGGACTTTGTGCATGATGTGGAGCAGTCTGCTGACATATCCCAGAATGACGTGGAGGAGACAAGTAGGATTTTTAAACAAGGGTATGGTGCCTACCGGTGCAAGCTGTGTCCTTACACACACGGCACTCTGGAGAAACTCAAAATCCACTATGAGAAGTACCACAACCAGCCTGAGTTTGATGTCTTTTCCCCGCCTCCTCCGAAGCTGCCAGTGTCCCTTGAACCTGAGATAACCACTGAAGTGAGCCCCTCCCAGGTCTCCGTGACGGAGGAGGAGGTGGGAGAGGATCCTATGTCCACTGCTCACTTCTCTACCTCGCATCTGGTCTCCCACACTGTGTTCCGGTGCCAGCTCTGCAAGTACTTCTGTTCCACTAGGAAGGGCATTGCCAGGCACTACCGGATCAAGCACAATAATGTCCGTGCCCAGCCCGAGGGCAAAAACAATCTCTTCAAGTGTGCCCTGTGTGCCTACACCAACCCCATCCGCAAGGGACTGGCAGCCCACTACCAGAAGCGCCACGACATTGATGCATATTACACCCACTGCCTTGCGGCCTCCAGGACCATCAGTGACAAGCCCAACAAGGTGATCATCCCATCCCCACCCAAAGATGACTCTCCTCAGCTGAGCGAGGAACTCCGGCGGGCTGTGGAGAAGAAAAAGTGCTCCTTATGTTCCTTCCAGTCCTTCAGCAAGAAAGGCATTGTGTCCCATTATATGAAGCGCCACCCGGGGGTGTTCCCAAAGAAGCAGCATGCCAGCAAGTTGGGGGGCTACTTCACAGCGGTCTACGCAGATGAACACGAGAAACCCCCACTGATGGAAGAAGAGGAGAGAAGCAGCTTTGAGAGGGCCGAGGTGGAAGGCGAAGCTCAAGACATCGAGTGGCTCCCGTTCCGCTGCATCAAATGCTTCAAGCTGTCCTTCAGCACGGCGGAGTTGCTGTGCATGCATTACACAGACCACCACAGCAGGGACTTAAAGAGGGACTTCGTCATCCTAGGCAGCGGCCCCCGCTTCCAGAACTCCACCTTCCAGTGTAAGCACTGTGATAGCAAATTGCAAAGCATAGCCGAGCTGACCTCACACTTGAACATCCACAATGAGGAATTCCAGAAGCGTGCCAAACGCCAGGAGAGGAGGAAACAGCTTTTGAGCAAGCAGAAATATGCAGATGGTGCTTTTGCAGATTTCAAACAAGAGAGGCCTTTTGGTCACTTAGAAGAGGTGCCAAAGATCAAGGAGAGGAAAGTGGTGGGCTACAAGTGTAAATTCTGCGTGGAAGTGCATCCAACGCTTCGGGCCATCTGTAACCACCTCCGGAAACATGTCCAGTATGGTAGCGTCCCGGCTGTGTCGGCTGCTGTGAAGGTTCCTGATGTGAGAGGGTAG
Peptide sequence:
MEVLQCDGCDFRAPSYEDLKAHIQDVHTAFLQPTDVAEDNDDEPLSGSMNASNQTEVEFSSIKDEFVIAEDLPGQSATALGSGGYYGHSPGYYGQHITPNPKPTNKFFQCKFCVRYFRSKNLLIEHTRKVHGAQAEESPTGPPVPGSLNYNIMMHEGFGKVFSCQFCTYKSPRRARIIKHQKMYHKNSLKESTAPPPAPAPLPDPLVPPVSLQDPCKELPAEVVERSILESMVKPLTKSRGNFCCEWCSYQTPRRERWCDHMMKKHRSMVKILSSIRQQEGPNVSEAQNDNEPSPTSNSTYLSMNAASREMPNANVSNFRGSMGNSIMRPNSSSTSKFSSSMSYPQMKPKSPHNSGLVNLTERSRYGMSDMTNSSADLDTNSMLNDSSSDEDLNEVDSENGLSVLDHQASGLSAEQLMGSDGNKLLETKGIPFRRFMNRFQCPFCPFLTMHRRSISRHIENIHLSGKTAVYKCDECPFTCKSSLKLGAHKQCHTGTSDWDTVNSQSESLSSSLNEGMVSYESSSINGRKSGVMLDPLQQQQPPQPPPPLPPPPPPPSQPLPQPPPPPLQSPHQVPPPTQQPQPPTQAPPLHPYKCTMCSYSTMTLKGLRVHQQHKHSFCDNLPKFEGQPSSLPLENETDSHPSSSNTVKKSQTSILGLSSKNNFVAKANRKLASDFPLDLSPVKKRTRIDEIASNLQSKINQTKLQEDAIINVEDDEEEEDDNEVEIEVELDREEEATDPIMEVPTAFSAQQIWARDASEAQKEPNYRSITHDYTATNGAEIELTLSEDEEDYYGSSASMKDQVSNAALLNTQPAIYGTEPSNENTDFGDSGRLYYCKHCDFNNKSARSVSTHYQRMHPYIKFSFRYILDPNDHSAVYRCLECYIDYTNFEDLQQHYGEHHPEAMNVLNFDHSDLIYRCRFCSYTSPNVRSLMPHYQRMHPTVKINNAMIFSSYVVEQQEGLNAESQTLREILNSAPKSMATSTPVARGGGLPATFNKNTPPKTFTPECESQKDPSVNTVVVYDCDVCSFASPNMHSVLVHYQKKHPEEKASYFRIQKTMRMVSVDRGSALSQLSFEVGAPMSPKMSNMGSPPPPQPPPPDLSIELYYCKHCSYSNRSVVGVLVHYQKRHPEIKVTAKYIRQAPPTAAMMRGAEGLQDSPRPPAPLQLNSSERDCPPVETEMFFCQHCDYGNRTVKGVLIHYQKKHRDFKANADVIRQHTATIRSLCDRNQKPASCVLLPASGMERDKTKLRALKCRQCSYTSPYFYALRKHIKKDHPALKATVTSIMRWAFLDGLIEAGYHCEWCIYSHMEPSGLLLHYQRRHPEHYVDYTYMATKLWAGPDPSSPTLTMSAEAKTYRCRDCVFEAVSIWDITNHYQAFHPWAMNGDESVLLDIIKEKDGVDKALLAPEELIGPVNCENSIPNPLPEQEAECPEDARLSPEKSIHLASANPAISSTPYQCTVCQSEYNNLHGLLTHYGKKHPGMKVKAADFAQDIDINPGAVYKCRHCPYINTRIHGVLTHYQKRHPAIKVTAEDFVHDVEQSADISQNDVEETSRIFKQGYGAYRCKLCPYTHGTLEKLKIHYEKYHNQPEFDVFSPPPPKLPVSLEPEITTEVSPSQVSVTEEEVGEDPMSTAHFSTSHLVSHTVFRCQLCKYFCSTRKGIARHYRIKHNNVRAQPEGKNNLFKCALCAYTNPIRKGLAAHYQKRHDIDAYYTHCLAASRTISDKPNKVIIPSPPKDDSPQLSEELRRAVEKKKCSLCSFQSFSKKGIVSHYMKRHPGVFPKKQHASKLGGYFTAVYADEHEKPPLMEEEERSSFERAEVEGEAQDIEWLPFRCIKCFKLSFSTAELLCMHYTDHHSRDLKRDFVILGSGPRFQNSTFQCKHCDSKLQSIAELTSHLNIHNEEFQKRAKRQERRKQLLSKQKYADGAFADFKQERPFGHLEEVPKIKERKVVGYKCKFCVEVHPTLRAICNHLRKHVQYGSVPAVSAAVKVPDVRG
IRESfinder result
IRESfinder score
0.432660386
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page