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mmu_circZfp236_4218
Basic information of circular RNA
PanCircBase ID:
mmu_circZfp236_4218
mm39_Chr. Position ID:
chr18|82636867|82700412|-
Gene name:
Zfp236
Transcript:
ENSMUST00000171071.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
22
Exon/intron indexes:
23,22,21,20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2
Exon/intron offsets:
0,1575,2348,4217,5461,9411,11228,11844,14235,14944,17990,20577,21357,25314,27226,38206,39260,49829,52943,55564,61849,63402
Genomic length:
63545
Exon/intron sizes in nt:
2,41,14,63,66,10,42,83,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr18:82636014-82636867|chr18:82700412-82710767
Splice length:
4218
Other database IDs:
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
ATGGGGTTTTGGCGTTGAATGATGAGGACATTGATGATGACTGCCCGATTCCAAACTTCCACAAATGCGAAATCTGTCTGCTGTCTTTTCCAAAAGAGTCCCAATTTCAGCGTCACATGAGGGAGCATGAGCAAAATGACAAGCCTCACCGATGTGACCAGTGCCCCCAAACATTTAATGTTGAATTCAACCTGACACTTCATAAATGTACACACAATGCGGAAGATCCTGTTTGTCCCGTGTGCAACAAGAAGTTCTCCAGAGTGGCCAGTCTCAAAGCACATATTATGCTCCACGAGAAGGAAGAGAACCTCATTTGCTCTGAGTGTGGGGATGAGTTCACACTGCACAGCCAGCTGGCCATTCACATGGAGGAACACCGGCAGGAGCTGGCCAACACCCGAGCGCACACCTGCAAGGCCTGTAAGAAGGAGTTCGAGACATCGCCAGAGCTGAAGGAGCACATGAAGACTCACTGTAAAGTTAGGGCGTCAGGTACAAGATCTTATAATCGGAACATTGACAGAAGCAGCTTCCCGTACTCATGCCCACACTGCGGAAAGACGTTCCAGAAGCCCAGCCAGTTAACGCGACACATCAGGATACACACAGGTGAAAGGCCATTCAAGTGCAGTGAGTGTGGAAAAGCTTTTAACCAGAAAGGGGCGCTGCAGACCCATATGATCAAGCACACAGGAGAGAAGCCACACGCTTGTGCCTTTTGTCCTGCCGCCTTTTCTCAGAAGGGGAACCTGCAGTCCCATGTTCAGAGGGTCCACTCAGAGGCCACGATCTTTCAGACTTTACCTCTGCAGCAGGTGGAAGCCCAGGTCTCCTCAGTGTCCAGTGAGCAGAGTTCTCAGGCAGTGAGTGACGTCATCCAGCAGCTTCTGGAACTGTCTGAGCCCGGCCCAGTGGAGGCACAGCAGTCCCCACAGTCTGGGCGACAACTGAGTGTGACAGTGGGCATCAACCAGGACATCCTCCAGCAAGCCTTAGAAAACAGTGGGCTGTCTTCACTTCCAGTTGCAGCTCCTCCCAGCGACTGCAGCCATGCTCAGACGGCTACAGTGTCCACACAGAGTCCACACGCCTCCAGTGTCTCTGCAGAGCAAGCTGATCCCATGGATGCAGAGCAGGAAAAGGGACAGGAAAGCCCTGAAAAGACGGATAAGAAAGAGAAAAAACTTCTGAAGAAGAAATCCCCGTTCCTACCTGGGTCCATTCGGGAGGAGAATGGGGTGCGGTGGCATGTGTGTCCCTACTGCACGAAGGAGTTCCGGAAGCCCAGTGACCTGGTGCGCCACATCCGCATCCACACCCATGAAAAGCCCTTCAAGTGTCCACAGTGTTTCCGGGCCTTTGCTGTGAAGAGCACACTGACTGCTCACATTAAAACTCACACGGGCATCAAGGCTTTCAAGTGCCAATACTGCATGAAGAGCTTTTCCACCTCAGGGAGCCTCAAGGTGCACATCCGCCTACACACAGGAGTTAGACCTTTTGCTTGTCCTCACTGTGATAAGAAGTTCCGCACCTCAGGCCACAGGAAGACTCACGTGGCTTCCCACTTTAAGCACACGGAGCTGAGGAAGCTGAGGCAGCAGCGGAAGCCTGTGAAGGGTCGGGTGGGCAAGAGCAGCGTTCCTGTCCCCGACATTCCTTTGCAAGAACCCATTCTCATAACTGACCTAGGTCTTATCCAGCCCATTCCAAAAAACCAATTTTTTCAAAATTATTTTAATAATAGTTTTGGCAATGAAGCAGATAGACCATACAAATGTTTCTACTGTCATCGAGCATATAAAAAGTCTTGCCACCTAAAACAGCACATCAGATCACATACAGGTGAAAAGCCTTTCAAATGCTCCCAGTGTGGCCGAGGCTTCGTCTCTGCAGGCGTGCTCAAAGCCCATGTCCGGACGCACACGGGGCTGAAGTCTTTCAAGTGTCTGATCTGCAATGGAGCCTTTACCACAGGTGGCAGCTTACGGCGACACATGGGCATACATAATGACCTCCGTCCCTACATGTGTCCCTATTGCCAGAAAACATTTAAGACTTCACTGAACTGCAAGAAACACATGAAAACTCACAGGTACGAACTGGCCCAGCAGCTCCAGCAGCACCAGGAGGCCTCCTCCATGGATGACGATAGCACCGTGGACCAGCAGAGCATGCACGTGGCGGCCCCCATGCCTGTGGAGATCGAAAGTGCAGAGCTGCAGCAGACTCCAGAGACAGTGGCCGCAGACCCTGAGTCAATACTGGAACTAGGGCCACAGCATGTGGTAGGCACAGAAGATGCAGCGCTTGGACAGCAGTTGGCAGATCAGCCTTTGGAGGCGGATGAAGATGGGTTCACAGCTTCCCAGGCTCCTCTCCCAGGGCACATGGACCAGTTTGAAGAGCAGGGCACTCCACAGCCATCCTTTGAGTCGGCAGGACTTCCACAAGGTTTCACGGTGACTGACACGTACAGTCAGCAGACATCCTTCCCACCTGTGCAGCAGCTGCAGGACTCTAGCACCCTCGAGTCCCAGGCCTTGTCCACGAGTTTCCACCAGCAAAACTTACTGCAGGTCCCCAACTCTGATGCCATCAACGTGGCAACTCGTTTGCTTCCAGAGTCATCTCAAGAGGATCTGGACCTACAAACACAAGGCCCCCAGTTCCTGGAGGACAGCGAGGACCAGAGCAGGCGCTCATACAGGTGTGACTACTGCAACAAGGGCTTCAAGAAGTCCAGCCACTTGAAGCAGCATGTGCGCTCACACACGGGGGAGAAGCCCTACAAGTGCAAGCTCTGTGGGCGTGCTTTTGTCTCCTCCGGTGTCCTCAAGTCCCACGAGAAGACACACACAGGTGTCAAGGCCTTCAGCTGCAGCATCTGCAATGCGTCTTTCACCACCAATGGGAGCCTCACGCGGCACATGGCCACACACATGAGCATGAAGCCTTACAAGTGTCCATTCTGTGAAGAGGGCTTCCGCACTGCGGTCCACTGTAGAAAACACATGAAGAGACACCAAGCAGTTTCGTCTGCAGCCGCAGCAGCTGCAGAGACAGAGGGAGGAGACACATGTGTGGAGGAAGATGAAGAAAATTCTGACAGAAGTGCATCAAGAAAGCCTCGTCCTGAGGTCATTACTTTCACAGAGGAGGAGACAGCCCAGCTGGCCAAAATTCAGCCCCAGGAGAGTGCTACAGTGTCTGAGAAGGTCCTGGTGCAGTCGGCTGCAGAAAAGGACCGCATCAGCGAGATGAAGGATAAGCAGGCAGAGCTTGAGGCTGAACCCAAGCACGCCAACTGTTGCACATATTGTCCGAAGAGCTTCAAGAAGCCCAGTGACCTGGTGAGGCATGTTAGAATCCATACTGGAGAAAAGCCATATAAGTGTGATGAATGTGGGAAGAGCTTTACTGTGAAGTCCACTCTAGATTGCCACGTGAAGACCCACACAGGCCAGAAGCTGTTCAGCTGCCATGTCTGCAGCAACGCCTTCTCCACAAAGGGAAGCCTGAAGGTACACATGCGCCTACACACAGGAGCAAAGCCTTTCAAATGCCCTCACTGTGAGCTGCGCTTCAGGACTTCTGGGAGAAGGAAGACTCATATGCAGTTTCACTACAAATCAGACCCAAAGAAGGCCAGGAAGCCTGTCACACGAAGCTCTTCAGAAAGTCTCCAGTCTGTGAACCTTCTCAACTCATCTTCCACGGACCCAAATGTGTTCATCATGAACAACTCTGTCCTAACAGGGCAGTTTGATCAGAATGTGCTTCAGCCAGGCTTGGTCGGCCAGGCTATCCTTCCTGCCTCTGTCTCAGCTGGTGGTGACTTGACAGTATCTTTGACTGATGGAAGTTTGGCCACTCTGGAAGGTATCCAGTTACAGCTAGCTGCTAACTTGGTTGGACCAAATGTTCAGATTTCTGGGATCGATGCCTCCAGCATCAACAATATCACATTGCAGATTGATCCGAGCATCTTGCAGCAAACACTACAGCAGGGCAGCCTGCTTGCTCAGCCAATCACAGGCGAGTCTAGCACAGCCTCCCAGAACAGTTCTCTTCAGACATCAGACAGCACCGTCCCAGCCAGCGTCGTTATCCAGCCTCTGTCAGGCCTGTCCTTACAGCCCACAGTGACATCTGCCAATCTGACCATTGGCCCACTGTCTGAACAGGACTCAGTGCTGACCACCAGCAGCAGCG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACAGCCCACAGTGACATCTG
59.96
TGGAAGTTTGGAATCGGGCA
59.89
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCTTACAGCCCACAGTGACA
59.6
TGGAAGTTTGGAATCGGGCA
59.89
145
PCR template sequence:
CCTCTGTCAGGCCTGTCCTTACAGCCCACAGTGACATCTGCCAATCTGACCATTGGCCCACTGTCTGAACAGGACTCAGTGCTGACCACCAGCAGCAGCGATGGGGTTTTGGCGTTGAATGATGAGGACATTGATGATGACTGCCCGATTCCAAACTTCCACAAATGCGAAATCTGTCTGCTGTCTTTTCCAAAAGAGTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
45
Interacting miRNAs (#binding sites)
mmu-miR-669d-5p(3), mmu-miR-27b-3p(2), mmu-miR-27a-3p(2), mmu-miR-135a-5p(2), mmu-miR-211-5p(2), mmu-miR-204-5p(2), mmu-miR-146a-5p(2), mmu-miR-370-3p(2), mmu-miR-1187(2), mmu-miR-1198-5p(2), mmu-miR-210-3p(1), mmu-miR-205-5p(1), mmu-miR-298-5p(1), mmu-miR-217-5p(1), mmu-miR-709(1), mmu-miR-25-3p(1), mmu-miR-138-5p(1), mmu-miR-339-5p(1), mmu-miR-139-5p(1), mmu-miR-181b-5p(1), mmu-miR-433-3p(1), mmu-miR-433-5p(1), mmu-miR-351-5p(1), mmu-miR-22-3p(1), mmu-miR-127-5p(1), mmu-miR-96-5p(1), mmu-miR-199b-3p(1), mmu-miR-218-5p(1), mmu-miR-199a-3p(1), mmu-miR-382-5p(1), mmu-miR-297a-5p(1), mmu-miR-224-5p(1), mmu-miR-705(1), mmu-miR-466a-5p(1), mmu-miR-466p-5p(1), mmu-miR-207(1), mmu-miR-673-5p(1), mmu-miR-335-3p(1), mmu-miR-188-3p(1), mmu-miR-3470b(1), mmu-miR-1199-5p(1), mmu-miR-540-3p(1), mmu-miR-670-5p(1), mmu-miR-3061-5p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ACCAGCAGCAGCGATGGGGTTTTGGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCZFP236_4218_ORF_1
0.8927
0.283202108
1
8319
ORF sequence:
ATGAGGGAGCATGAGCAAAATGACAAGCCTCACCGATGTGACCAGTGCCCCCAAACATTTAATGTTGAATTCAACCTGACACTTCATAAATGTACACACAATGCGGAAGATCCTGTTTGTCCCGTGTGCAACAAGAAGTTCTCCAGAGTGGCCAGTCTCAAAGCACATATTATGCTCCACGAGAAGGAAGAGAACCTCATTTGCTCTGAGTGTGGGGATGAGTTCACACTGCACAGCCAGCTGGCCATTCACATGGAGGAACACCGGCAGGAGCTGGCCAACACCCGAGCGCACACCTGCAAGGCCTGTAAGAAGGAGTTCGAGACATCGCCAGAGCTGAAGGAGCACATGAAGACTCACTGTAAAGTTAGGGCGTCAGGTACAAGATCTTATAATCGGAACATTGACAGAAGCAGCTTCCCGTACTCATGCCCACACTGCGGAAAGACGTTCCAGAAGCCCAGCCAGTTAACGCGACACATCAGGATACACACAGGTGAAAGGCCATTCAAGTGCAGTGAGTGTGGAAAAGCTTTTAACCAGAAAGGGGCGCTGCAGACCCATATGATCAAGCACACAGGAGAGAAGCCACACGCTTGTGCCTTTTGTCCTGCCGCCTTTTCTCAGAAGGGGAACCTGCAGTCCCATGTTCAGAGGGTCCACTCAGAGGCCACGATCTTTCAGACTTTACCTCTGCAGCAGGTGGAAGCCCAGGTCTCCTCAGTGTCCAGTGAGCAGAGTTCTCAGGCAGTGAGTGACGTCATCCAGCAGCTTCTGGAACTGTCTGAGCCCGGCCCAGTGGAGGCACAGCAGTCCCCACAGTCTGGGCGACAACTGAGTGTGACAGTGGGCATCAACCAGGACATCCTCCAGCAAGCCTTAGAAAACAGTGGGCTGTCTTCACTTCCAGTTGCAGCTCCTCCCAGCGACTGCAGCCATGCTCAGACGGCTACAGTGTCCACACAGAGTCCACACGCCTCCAGTGTCTCTGCAGAGCAAGCTGATCCCATGGATGCAGAGCAGGAAAAGGGACAGGAAAGCCCTGAAAAGACGGATAAGAAAGAGAAAAAACTTCTGAAGAAGAAATCCCCGTTCCTACCTGGGTCCATTCGGGAGGAGAATGGGGTGCGGTGGCATGTGTGTCCCTACTGCACGAAGGAGTTCCGGAAGCCCAGTGACCTGGTGCGCCACATCCGCATCCACACCCATGAAAAGCCCTTCAAGTGTCCACAGTGTTTCCGGGCCTTTGCTGTGAAGAGCACACTGACTGCTCACATTAAAACTCACACGGGCATCAAGGCTTTCAAGTGCCAATACTGCATGAAGAGCTTTTCCACCTCAGGGAGCCTCAAGGTGCACATCCGCCTACACACAGGAGTTAGACCTTTTGCTTGTCCTCACTGTGATAAGAAGTTCCGCACCTCAGGCCACAGGAAGACTCACGTGGCTTCCCACTTTAAGCACACGGAGCTGAGGAAGCTGAGGCAGCAGCGGAAGCCTGTGAAGGGTCGGGTGGGCAAGAGCAGCGTTCCTGTCCCCGACATTCCTTTGCAAGAACCCATTCTCATAACTGACCTAGGTCTTATCCAGCCCATTCCAAAAAACCAATTTTTTCAAAATTATTTTAATAATAGTTTTGGCAATGAAGCAGATAGACCATACAAATGTTTCTACTGTCATCGAGCATATAAAAAGTCTTGCCACCTAAAACAGCACATCAGATCACATACAGGTGAAAAGCCTTTCAAATGCTCCCAGTGTGGCCGAGGCTTCGTCTCTGCAGGCGTGCTCAAAGCCCATGTCCGGACGCACACGGGGCTGAAGTCTTTCAAGTGTCTGATCTGCAATGGAGCCTTTACCACAGGTGGCAGCTTACGGCGACACATGGGCATACATAATGACCTCCGTCCCTACATGTGTCCCTATTGCCAGAAAACATTTAAGACTTCACTGAACTGCAAGAAACACATGAAAACTCACAGGTACGAACTGGCCCAGCAGCTCCAGCAGCACCAGGAGGCCTCCTCCATGGATGACGATAGCACCGTGGACCAGCAGAGCATGCACGTGGCGGCCCCCATGCCTGTGGAGATCGAAAGTGCAGAGCTGCAGCAGACTCCAGAGACAGTGGCCGCAGACCCTGAGTCAATACTGGAACTAGGGCCACAGCATGTGGTAGGCACAGAAGATGCAGCGCTTGGACAGCAGTTGGCAGATCAGCCTTTGGAGGCGGATGAAGATGGGTTCACAGCTTCCCAGGCTCCTCTCCCAGGGCACATGGACCAGTTTGAAGAGCAGGGCACTCCACAGCCATCCTTTGAGTCGGCAGGACTTCCACAAGGTTTCACGGTGACTGACACGTACAGTCAGCAGACATCCTTCCCACCTGTGCAGCAGCTGCAGGACTCTAGCACCCTCGAGTCCCAGGCCTTGTCCACGAGTTTCCACCAGCAAAACTTACTGCAGGTCCCCAACTCTGATGCCATCAACGTGGCAACTCGTTTGCTTCCAGAGTCATCTCAAGAGGATCTGGACCTACAAACACAAGGCCCCCAGTTCCTGGAGGACAGCGAGGACCAGAGCAGGCGCTCATACAGGTGTGACTACTGCAACAAGGGCTTCAAGAAGTCCAGCCACTTGAAGCAGCATGTGCGCTCACACACGGGGGAGAAGCCCTACAAGTGCAAGCTCTGTGGGCGTGCTTTTGTCTCCTCCGGTGTCCTCAAGTCCCACGAGAAGACACACACAGGTGTCAAGGCCTTCAGCTGCAGCATCTGCAATGCGTCTTTCACCACCAATGGGAGCCTCACGCGGCACATGGCCACACACATGAGCATGAAGCCTTACAAGTGTCCATTCTGTGAAGAGGGCTTCCGCACTGCGGTCCACTGTAGAAAACACATGAAGAGACACCAAGCAGTTTCGTCTGCAGCCGCAGCAGCTGCAGAGACAGAGGGAGGAGACACATGTGTGGAGGAAGATGAAGAAAATTCTGACAGAAGTGCATCAAGAAAGCCTCGTCCTGAGGTCATTACTTTCACAGAGGAGGAGACAGCCCAGCTGGCCAAAATTCAGCCCCAGGAGAGTGCTACAGTGTCTGAGAAGGTCCTGGTGCAGTCGGCTGCAGAAAAGGACCGCATCAGCGAGATGAAGGATAAGCAGGCAGAGCTTGAGGCTGAACCCAAGCACGCCAACTGTTGCACATATTGTCCGAAGAGCTTCAAGAAGCCCAGTGACCTGGTGAGGCATGTTAGAATCCATACTGGAGAAAAGCCATATAAGTGTGATGAATGTGGGAAGAGCTTTACTGTGAAGTCCACTCTAGATTGCCACGTGAAGACCCACACAGGCCAGAAGCTGTTCAGCTGCCATGTCTGCAGCAACGCCTTCTCCACAAAGGGAAGCCTGAAGGTACACATGCGCCTACACACAGGAGCAAAGCCTTTCAAATGCCCTCACTGTGAGCTGCGCTTCAGGACTTCTGGGAGAAGGAAGACTCATATGCAGTTTCACTACAAATCAGACCCAAAGAAGGCCAGGAAGCCTGTCACACGAAGCTCTTCAGAAAGTCTCCAGTCTGTGAACCTTCTCAACTCATCTTCCACGGACCCAAATGTGTTCATCATGAACAACTCTGTCCTAACAGGGCAGTTTGATCAGAATGTGCTTCAGCCAGGCTTGGTCGGCCAGGCTATCCTTCCTGCCTCTGTCTCAGCTGGTGGTGACTTGACAGTATCTTTGACTGATGGAAGTTTGGCCACTCTGGAAGGTATCCAGTTACAGCTAGCTGCTAACTTGGTTGGACCAAATGTTCAGATTTCTGGGATCGATGCCTCCAGCATCAACAATATCACATTGCAGATTGATCCGAGCATCTTGCAGCAAACACTACAGCAGGGCAGCCTGCTTGCTCAGCCAATCACAGGCGAGTCTAGCACAGCCTCCCAGAACAGTTCTCTTCAGACATCAGACAGCACCGTCCCAGCCAGCGTCGTTATCCAGCCTCTGTCAGGCCTGTCCTTACAGCCCACAGTGACATCTGCCAATCTGACCATTGGCCCACTGTCTGAACAGGACTCAGTGCTGACCACCAGCAGCAGCGATGGGGTTTTGGCGTTGAATGATGAGGACATTGATGATGACTGCCCGATTCCAAACTTCCACAAATGCGAAATCTGTCTGCTGTCTTTTCCAAAAGAGTCCCAATTTCAGCGTCACATGAGGGAGCATGAGCAAAATGACAAGCCTCACCGATGTGACCAGTGCCCCCAAACATTTAATGTTGAATTCAACCTGACACTTCATAAATGTACACACAATGCGGAAGATCCTGTTTGTCCCGTGTGCAACAAGAAGTTCTCCAGAGTGGCCAGTCTCAAAGCACATATTATGCTCCACGAGAAGGAAGAGAACCTCATTTGCTCTGAGTGTGGGGATGAGTTCACACTGCACAGCCAGCTGGCCATTCACATGGAGGAACACCGGCAGGAGCTGGCCAACACCCGAGCGCACACCTGCAAGGCCTGTAAGAAGGAGTTCGAGACATCGCCAGAGCTGAAGGAGCACATGAAGACTCACTGTAAAGTTAGGGCGTCAGGTACAAGATCTTATAATCGGAACATTGACAGAAGCAGCTTCCCGTACTCATGCCCACACTGCGGAAAGACGTTCCAGAAGCCCAGCCAGTTAACGCGACACATCAGGATACACACAGGTGAAAGGCCATTCAAGTGCAGTGAGTGTGGAAAAGCTTTTAACCAGAAAGGGGCGCTGCAGACCCATATGATCAAGCACACAGGAGAGAAGCCACACGCTTGTGCCTTTTGTCCTGCCGCCTTTTCTCAGAAGGGGAACCTGCAGTCCCATGTTCAGAGGGTCCACTCAGAGGCCACGATCTTTCAGACTTTACCTCTGCAGCAGGTGGAAGCCCAGGTCTCCTCAGTGTCCAGTGAGCAGAGTTCTCAGGCAGTGAGTGACGTCATCCAGCAGCTTCTGGAACTGTCTGAGCCCGGCCCAGTGGAGGCACAGCAGTCCCCACAGTCTGGGCGACAACTGAGTGTGACAGTGGGCATCAACCAGGACATCCTCCAGCAAGCCTTAGAAAACAGTGGGCTGTCTTCACTTCCAGTTGCAGCTCCTCCCAGCGACTGCAGCCATGCTCAGACGGCTACAGTGTCCACACAGAGTCCACACGCCTCCAGTGTCTCTGCAGAGCAAGCTGATCCCATGGATGCAGAGCAGGAAAAGGGACAGGAAAGCCCTGAAAAGACGGATAAGAAAGAGAAAAAACTTCTGAAGAAGAAATCCCCGTTCCTACCTGGGTCCATTCGGGAGGAGAATGGGGTGCGGTGGCATGTGTGTCCCTACTGCACGAAGGAGTTCCGGAAGCCCAGTGACCTGGTGCGCCACATCCGCATCCACACCCATGAAAAGCCCTTCAAGTGTCCACAGTGTTTCCGGGCCTTTGCTGTGAAGAGCACACTGACTGCTCACATTAAAACTCACACGGGCATCAAGGCTTTCAAGTGCCAATACTGCATGAAGAGCTTTTCCACCTCAGGGAGCCTCAAGGTGCACATCCGCCTACACACAGGAGTTAGACCTTTTGCTTGTCCTCACTGTGATAAGAAGTTCCGCACCTCAGGCCACAGGAAGACTCACGTGGCTTCCCACTTTAAGCACACGGAGCTGAGGAAGCTGAGGCAGCAGCGGAAGCCTGTGAAGGGTCGGGTGGGCAAGAGCAGCGTTCCTGTCCCCGACATTCCTTTGCAAGAACCCATTCTCATAACTGACCTAGGTCTTATCCAGCCCATTCCAAAAAACCAATTTTTTCAAAATTATTTTAATAATAGTTTTGGCAATGAAGCAGATAGACCATACAAATGTTTCTACTGTCATCGAGCATATAAAAAGTCTTGCCACCTAAAACAGCACATCAGATCACATACAGGTGAAAAGCCTTTCAAATGCTCCCAGTGTGGCCGAGGCTTCGTCTCTGCAGGCGTGCTCAAAGCCCATGTCCGGACGCACACGGGGCTGAAGTCTTTCAAGTGTCTGATCTGCAATGGAGCCTTTACCACAGGTGGCAGCTTACGGCGACACATGGGCATACATAATGACCTCCGTCCCTACATGTGTCCCTATTGCCAGAAAACATTTAAGACTTCACTGAACTGCAAGAAACACATGAAAACTCACAGGTACGAACTGGCCCAGCAGCTCCAGCAGCACCAGGAGGCCTCCTCCATGGATGACGATAGCACCGTGGACCAGCAGAGCATGCACGTGGCGGCCCCCATGCCTGTGGAGATCGAAAGTGCAGAGCTGCAGCAGACTCCAGAGACAGTGGCCGCAGACCCTGAGTCAATACTGGAACTAGGGCCACAGCATGTGGTAGGCACAGAAGATGCAGCGCTTGGACAGCAGTTGGCAGATCAGCCTTTGGAGGCGGATGAAGATGGGTTCACAGCTTCCCAGGCTCCTCTCCCAGGGCACATGGACCAGTTTGAAGAGCAGGGCACTCCACAGCCATCCTTTGAGTCGGCAGGACTTCCACAAGGTTTCACGGTGACTGACACGTACAGTCAGCAGACATCCTTCCCACCTGTGCAGCAGCTGCAGGACTCTAGCACCCTCGAGTCCCAGGCCTTGTCCACGAGTTTCCACCAGCAAAACTTACTGCAGGTCCCCAACTCTGATGCCATCAACGTGGCAACTCGTTTGCTTCCAGAGTCATCTCAAGAGGATCTGGACCTACAAACACAAGGCCCCCAGTTCCTGGAGGACAGCGAGGACCAGAGCAGGCGCTCATACAGGTGTGACTACTGCAACAAGGGCTTCAAGAAGTCCAGCCACTTGAAGCAGCATGTGCGCTCACACACGGGGGAGAAGCCCTACAAGTGCAAGCTCTGTGGGCGTGCTTTTGTCTCCTCCGGTGTCCTCAAGTCCCACGAGAAGACACACACAGGTGTCAAGGCCTTCAGCTGCAGCATCTGCAATGCGTCTTTCACCACCAATGGGAGCCTCACGCGGCACATGGCCACACACATGAGCATGAAGCCTTACAAGTGTCCATTCTGTGAAGAGGGCTTCCGCACTGCGGTCCACTGTAGAAAACACATGAAGAGACACCAAGCAGTTTCGTCTGCAGCCGCAGCAGCTGCAGAGACAGAGGGAGGAGACACATGTGTGGAGGAAGATGAAGAAAATTCTGACAGAAGTGCATCAAGAAAGCCTCGTCCTGAGGTCATTACTTTCACAGAGGAGGAGACAGCCCAGCTGGCCAAAATTCAGCCCCAGGAGAGTGCTACAGTGTCTGAGAAGGTCCTGGTGCAGTCGGCTGCAGAAAAGGACCGCATCAGCGAGATGAAGGATAAGCAGGCAGAGCTTGAGGCTGAACCCAAGCACGCCAACTGTTGCACATATTGTCCGAAGAGCTTCAAGAAGCCCAGTGACCTGGTGAGGCATGTTAGAATCCATACTGGAGAAAAGCCATATAAGTGTGATGAATGTGGGAAGAGCTTTACTGTGAAGTCCACTCTAGATTGCCACGTGAAGACCCACACAGGCCAGAAGCTGTTCAGCTGCCATGTCTGCAGCAACGCCTTCTCCACAAAGGGAAGCCTGAAGGTACACATGCGCCTACACACAGGAGCAAAGCCTTTCAAATGCCCTCACTGTGAGCTGCGCTTCAGGACTTCTGGGAGAAGGAAGACTCATATGCAGTTTCACTACAAATCAGACCCAAAGAAGGCCAGGAAGCCTGTCACACGAAGCTCTTCAGAAAGTCTCCAGTCTGTGAACCTTCTCAACTCATCTTCCACGGACCCAAATGTGTTCATCATGAACAACTCTGTCCTAACAGGGCAGTTTGATCAGAATGTGCTTCAGCCAGGCTTGGTCGGCCAGGCTATCCTTCCTGCCTCTGTCTCAGCTGGTGGTGACTTGACAGTATCTTTGACTGATGGAAGTTTGGCCACTCTGGAAGGTATCCAGTTACAGCTAGCTGCTAACTTGGTTGGACCAAATGTTCAGATTTCTGGGATCGATGCCTCCAGCATCAACAATATCACATTGCAGATTGATCCGAGCATCTTGCAGCAAACACTACAGCAGGGCAGCCTGCTTGCTCAGCCAATCACAGGCGAGTCTAGCACAGCCTCCCAGAACAGTTCTCTTCAGACATCAGACAGCACCGTCCCAGCCAGCGTCGTTATCCAGCCTCTGTCAGGCCTGTCCTTACAGCCCACAGTGACATCTGCCAATCTGACCATTGGCCCACTGTCTGAACAGGACTCAGTGCTGACCACCAGCAGCAGC
Peptide sequence:
MREHEQNDKPHRCDQCPQTFNVEFNLTLHKCTHNAEDPVCPVCNKKFSRVASLKAHIMLHEKEENLICSECGDEFTLHSQLAIHMEEHRQELANTRAHTCKACKKEFETSPELKEHMKTHCKVRASGTRSYNRNIDRSSFPYSCPHCGKTFQKPSQLTRHIRIHTGERPFKCSECGKAFNQKGALQTHMIKHTGEKPHACAFCPAAFSQKGNLQSHVQRVHSEATIFQTLPLQQVEAQVSSVSSEQSSQAVSDVIQQLLELSEPGPVEAQQSPQSGRQLSVTVGINQDILQQALENSGLSSLPVAAPPSDCSHAQTATVSTQSPHASSVSAEQADPMDAEQEKGQESPEKTDKKEKKLLKKKSPFLPGSIREENGVRWHVCPYCTKEFRKPSDLVRHIRIHTHEKPFKCPQCFRAFAVKSTLTAHIKTHTGIKAFKCQYCMKSFSTSGSLKVHIRLHTGVRPFACPHCDKKFRTSGHRKTHVASHFKHTELRKLRQQRKPVKGRVGKSSVPVPDIPLQEPILITDLGLIQPIPKNQFFQNYFNNSFGNEADRPYKCFYCHRAYKKSCHLKQHIRSHTGEKPFKCSQCGRGFVSAGVLKAHVRTHTGLKSFKCLICNGAFTTGGSLRRHMGIHNDLRPYMCPYCQKTFKTSLNCKKHMKTHRYELAQQLQQHQEASSMDDDSTVDQQSMHVAAPMPVEIESAELQQTPETVAADPESILELGPQHVVGTEDAALGQQLADQPLEADEDGFTASQAPLPGHMDQFEEQGTPQPSFESAGLPQGFTVTDTYSQQTSFPPVQQLQDSSTLESQALSTSFHQQNLLQVPNSDAINVATRLLPESSQEDLDLQTQGPQFLEDSEDQSRRSYRCDYCNKGFKKSSHLKQHVRSHTGEKPYKCKLCGRAFVSSGVLKSHEKTHTGVKAFSCSICNASFTTNGSLTRHMATHMSMKPYKCPFCEEGFRTAVHCRKHMKRHQAVSSAAAAAAETEGGDTCVEEDEENSDRSASRKPRPEVITFTEEETAQLAKIQPQESATVSEKVLVQSAAEKDRISEMKDKQAELEAEPKHANCCTYCPKSFKKPSDLVRHVRIHTGEKPYKCDECGKSFTVKSTLDCHVKTHTGQKLFSCHVCSNAFSTKGSLKVHMRLHTGAKPFKCPHCELRFRTSGRRKTHMQFHYKSDPKKARKPVTRSSSESLQSVNLLNSSSTDPNVFIMNNSVLTGQFDQNVLQPGLVGQAILPASVSAGGDLTVSLTDGSLATLEGIQLQLAANLVGPNVQISGIDASSINNITLQIDPSILQQTLQQGSLLAQPITGESSTASQNSSLQTSDSTVPASVVIQPLSGLSLQPTVTSANLTIGPLSEQDSVLTTSSSDGVLALNDEDIDDDCPIPNFHKCEICLLSFPKESQFQRHMREHEQNDKPHRCDQCPQTFNVEFNLTLHKCTHNAEDPVCPVCNKKFSRVASLKAHIMLHEKEENLICSECGDEFTLHSQLAIHMEEHRQELANTRAHTCKACKKEFETSPELKEHMKTHCKVRASGTRSYNRNIDRSSFPYSCPHCGKTFQKPSQLTRHIRIHTGERPFKCSECGKAFNQKGALQTHMIKHTGEKPHACAFCPAAFSQKGNLQSHVQRVHSEATIFQTLPLQQVEAQVSSVSSEQSSQAVSDVIQQLLELSEPGPVEAQQSPQSGRQLSVTVGINQDILQQALENSGLSSLPVAAPPSDCSHAQTATVSTQSPHASSVSAEQADPMDAEQEKGQESPEKTDKKEKKLLKKKSPFLPGSIREENGVRWHVCPYCTKEFRKPSDLVRHIRIHTHEKPFKCPQCFRAFAVKSTLTAHIKTHTGIKAFKCQYCMKSFSTSGSLKVHIRLHTGVRPFACPHCDKKFRTSGHRKTHVASHFKHTELRKLRQQRKPVKGRVGKSSVPVPDIPLQEPILITDLGLIQPIPKNQFFQNYFNNSFGNEADRPYKCFYCHRAYKKSCHLKQHIRSHTGEKPFKCSQCGRGFVSAGVLKAHVRTHTGLKSFKCLICNGAFTTGGSLRRHMGIHNDLRPYMCPYCQKTFKTSLNCKKHMKTHRYELAQQLQQHQEASSMDDDSTVDQQSMHVAAPMPVEIESAELQQTPETVAADPESILELGPQHVVGTEDAALGQQLADQPLEADEDGFTASQAPLPGHMDQFEEQGTPQPSFESAGLPQGFTVTDTYSQQTSFPPVQQLQDSSTLESQALSTSFHQQNLLQVPNSDAINVATRLLPESSQEDLDLQTQGPQFLEDSEDQSRRSYRCDYCNKGFKKSSHLKQHVRSHTGEKPYKCKLCGRAFVSSGVLKSHEKTHTGVKAFSCSICNASFTTNGSLTRHMATHMSMKPYKCPFCEEGFRTAVHCRKHMKRHQAVSSAAAAAAETEGGDTCVEEDEENSDRSASRKPRPEVITFTEEETAQLAKIQPQESATVSEKVLVQSAAEKDRISEMKDKQAELEAEPKHANCCTYCPKSFKKPSDLVRHVRIHTGEKPYKCDECGKSFTVKSTLDCHVKTHTGQKLFSCHVCSNAFSTKGSLKVHMRLHTGAKPFKCPHCELRFRTSGRRKTHMQFHYKSDPKKARKPVTRSSSESLQSVNLLNSSSTDPNVFIMNNSVLTGQFDQNVLQPGLVGQAILPASVSAGGDLTVSLTDGSLATLEGIQLQLAANLVGPNVQISGIDASSINNITLQIDPSILQQTLQQGSLLAQPITGESSTASQNSSLQTSDSTVPASVVIQPLSGLSLQPTVTSANLTIGPLSEQDSVLTTSSS
IRESfinder result
IRESfinder score
0.515930708
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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