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mmu_circZfp106_1608

Basic information of circular RNA
PanCircBase ID:

mmu_circZfp106_1608

mm39_Chr. Position ID:

chr2|120349545|120358878|-

Gene name:

Zfp106

Transcript:

ENSMUST00000055241.13

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

7

Exon/intron indexes:

15,14,13,12,11,10,9

Exon/intron offsets:

0,1346,3620,4456,4800,7684,9272

Genomic length:

9333

Exon/intron sizes in nt:

117,135,146,53,760,336,61

Flanking exon/introns:

chr2:120346586-120349545|chr2:120358878-120358955

Splice length:

1608

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

ATAACTGTGGAGATGAGTGCACTGAGGACTCACAGAATACAGATTCTACAAGGATTGCAAGAAACATATGAACCTCCTGAGCACCCAGACCAGGCTCCCTGTAGCCTCATATCACGAGAACAAAGGAACAGCCGATCTCAGACATCTTTTGAGACAGCTCTGCTGCCTGCACCCTTTTTCCCGGGGTTTCTGGATCCACCTCCTTCCCATGCATCTCTACCATCCTCTGGAAACCCTCTCCAAATAACCACGTGTACTTTACAAGCCCATGGCACTGCCCCTGATTCATCGGTTCAGATTAAACAAGAGCCCATGTCTCCTGAACAAGAGGGGAATATGAATGCTTTGCCACAAGGCTGTGCTTCCAATGTGTCCAAGGAATTACTGCAAACTAATAGAGTGGTCGATGACGGCTCTTCAGTTTACCCAGCCATCCCTGCAGTGATAGCATCAGAGTCAACAGAGAACTGCCAGGAGGTTAGCAAAGATCTGAATTTTTCTGTGGAGCAAGGAAATTCCAGAAGCAAAGGAAACTCTCCCTCTTGCCAGTCTCCTGATCTTCCTGGCATAAACAGAGGTGAAGAGACAGCCAAAGGCAGCAGTGGATCTGAAGCCTGCAGCAGTTCTTTTCTGAGATTGTCTTTCACTCCCGAAACGCCTGCAGAGAAGGAAACTCAGTCTCCAGCTGACCAGCCTGAGCAGCAGGCAGAATCCACACTGGCATCAGCTGAAACTAGAGGTAGCAAGAAGAAGAAGAAACTTCGGAAGAAGAAGACGCTTCGGGCCACTCATGTTCCTGAGAACAGTGACACAGAGCAGGATGTGTTCACGGCTAAGCCTGCAAGGAAGGTCAAAACTGCAAAGGCAGCTAAAGGGGCGAAAGTGACAACCAGCCAGACTGGTCAGGAGCAAGGAACTGCCAGAGATGAGCCAGACAGCGATTCTTCTCTGGAAGTCCTGGAAGTCACAAATCCTCAGTTAGAAGTAGTTGCCATTGATACTTCTGAATCGGGAGACGAGAAACCTGACAGTCCATCGAAAAAAGATGCCTGGATCGCTGCAGAACAGAACCCCATAGAAACTTCTCGTTCTGGTTGTGATGAGGTTAGCTCTACCAGTGAGCTTGGCACCCGCTACAAGGATGGTGTTCCTGTGAGTGTGGCGGAAACCCAGACGGTGATCTCCATCAAAGCATCTAAGCACTCTTCAGAAATATCTTCAGAGCCGGGAGATGATGAGGAGCCTACAGAAGGAAGCTTCGAAGGACACCAGGCTGCAGTGAATGCAATTCAGATATTTGGAAACTTCCTGTATACTTGTTCAGCAGACACAACTGTCCGGGTTTATAATCTGGTGAGTCGAAAGTGTGTTGGTGTCTTTGAGGGACACACTTCCAAAGTGAACTGCCTTCTTGTCACTCACACCTCTGGGAAGAGTTCTGTCCTCTACACGGGTTCCAGTGACCACACCATCCGCTGCTACAATATTAAGACCCGAGAGTGTATGGAACAGTTACAGCTGGAAGACCGTGTCCTCTGCCTTCATAATAGATGGCGAACCCTCTATGCTGGACTAGCAAATGGCACTGTGGTCACATTCGACATAAAG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

ATGGCGAACCCTCTATGCTG

59.89

TGGGTGCTCAGGAGGTTCAT

60.84

145

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

CTGGAAGACCGTGTCCTCTG

59.76

TGGGTGCTCAGGAGGTTCAT

60.84

177

PCR template sequence:

ACAGTTACAGCTGGAAGACCGTGTCCTCTGCCTTCATAATAGATGGCGAACCCTCTATGCTGGACTAGCAAATGGCACTGTGGTCACATTCGACATAAAGATAACTGTGGAGATGAGTGCACTGAGGACTCACAGAATACAGATTCTACAAGGATTGCAAGAAACATATGAACCTCCTGAGCACCCAGACCAGGCTCCCT

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

16

Interacting miRNAs (#binding sites)

mmu-miR-362-5p(2), mmu-miR-199a-5p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-211-5p(1), mmu-miR-148a-3p(1), mmu-miR-298-5p(1), mmu-miR-216a-5p(1), mmu-miR-181b-5p(1), mmu-miR-22-3p(1), mmu-miR-34b-5p(1), mmu-miR-680(1), mmu-miR-5101(1), mmu-miR-697(1), mmu-miR-338-3p(1), mmu-miR-181d-5p(1)

siRNAs for circular RNA silencing
Junction sequence

ATTCGACATAAAGATAACTGTGGAGA

siRNA sets

NA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCZFP106_1608_ORF_1

1.0931

0.197567504

0.999999999

3204

ORF sequence:

ATGAGTGCACTGAGGACTCACAGAATACAGATTCTACAAGGATTGCAAGAAACATATGAACCTCCTGAGCACCCAGACCAGGCTCCCTGTAGCCTCATATCACGAGAACAAAGGAACAGCCGATCTCAGACATCTTTTGAGACAGCTCTGCTGCCTGCACCCTTTTTCCCGGGGTTTCTGGATCCACCTCCTTCCCATGCATCTCTACCATCCTCTGGAAACCCTCTCCAAATAACCACGTGTACTTTACAAGCCCATGGCACTGCCCCTGATTCATCGGTTCAGATTAAACAAGAGCCCATGTCTCCTGAACAAGAGGGGAATATGAATGCTTTGCCACAAGGCTGTGCTTCCAATGTGTCCAAGGAATTACTGCAAACTAATAGAGTGGTCGATGACGGCTCTTCAGTTTACCCAGCCATCCCTGCAGTGATAGCATCAGAGTCAACAGAGAACTGCCAGGAGGTTAGCAAAGATCTGAATTTTTCTGTGGAGCAAGGAAATTCCAGAAGCAAAGGAAACTCTCCCTCTTGCCAGTCTCCTGATCTTCCTGGCATAAACAGAGGTGAAGAGACAGCCAAAGGCAGCAGTGGATCTGAAGCCTGCAGCAGTTCTTTTCTGAGATTGTCTTTCACTCCCGAAACGCCTGCAGAGAAGGAAACTCAGTCTCCAGCTGACCAGCCTGAGCAGCAGGCAGAATCCACACTGGCATCAGCTGAAACTAGAGGTAGCAAGAAGAAGAAGAAACTTCGGAAGAAGAAGACGCTTCGGGCCACTCATGTTCCTGAGAACAGTGACACAGAGCAGGATGTGTTCACGGCTAAGCCTGCAAGGAAGGTCAAAACTGCAAAGGCAGCTAAAGGGGCGAAAGTGACAACCAGCCAGACTGGTCAGGAGCAAGGAACTGCCAGAGATGAGCCAGACAGCGATTCTTCTCTGGAAGTCCTGGAAGTCACAAATCCTCAGTTAGAAGTAGTTGCCATTGATACTTCTGAATCGGGAGACGAGAAACCTGACAGTCCATCGAAAAAAGATGCCTGGATCGCTGCAGAACAGAACCCCATAGAAACTTCTCGTTCTGGTTGTGATGAGGTTAGCTCTACCAGTGAGCTTGGCACCCGCTACAAGGATGGTGTTCCTGTGAGTGTGGCGGAAACCCAGACGGTGATCTCCATCAAAGCATCTAAGCACTCTTCAGAAATATCTTCAGAGCCGGGAGATGATGAGGAGCCTACAGAAGGAAGCTTCGAAGGACACCAGGCTGCAGTGAATGCAATTCAGATATTTGGAAACTTCCTGTATACTTGTTCAGCAGACACAACTGTCCGGGTTTATAATCTGGTGAGTCGAAAGTGTGTTGGTGTCTTTGAGGGACACACTTCCAAAGTGAACTGCCTTCTTGTCACTCACACCTCTGGGAAGAGTTCTGTCCTCTACACGGGTTCCAGTGACCACACCATCCGCTGCTACAATATTAAGACCCGAGAGTGTATGGAACAGTTACAGCTGGAAGACCGTGTCCTCTGCCTTCATAATAGATGGCGAACCCTCTATGCTGGACTAGCAAATGGCACTGTGGTCACATTCGACATAAAGATAACTGTGGAGATGAGTGCACTGAGGACTCACAGAATACAGATTCTACAAGGATTGCAAGAAACATATGAACCTCCTGAGCACCCAGACCAGGCTCCCTGTAGCCTCATATCACGAGAACAAAGGAACAGCCGATCTCAGACATCTTTTGAGACAGCTCTGCTGCCTGCACCCTTTTTCCCGGGGTTTCTGGATCCACCTCCTTCCCATGCATCTCTACCATCCTCTGGAAACCCTCTCCAAATAACCACGTGTACTTTACAAGCCCATGGCACTGCCCCTGATTCATCGGTTCAGATTAAACAAGAGCCCATGTCTCCTGAACAAGAGGGGAATATGAATGCTTTGCCACAAGGCTGTGCTTCCAATGTGTCCAAGGAATTACTGCAAACTAATAGAGTGGTCGATGACGGCTCTTCAGTTTACCCAGCCATCCCTGCAGTGATAGCATCAGAGTCAACAGAGAACTGCCAGGAGGTTAGCAAAGATCTGAATTTTTCTGTGGAGCAAGGAAATTCCAGAAGCAAAGGAAACTCTCCCTCTTGCCAGTCTCCTGATCTTCCTGGCATAAACAGAGGTGAAGAGACAGCCAAAGGCAGCAGTGGATCTGAAGCCTGCAGCAGTTCTTTTCTGAGATTGTCTTTCACTCCCGAAACGCCTGCAGAGAAGGAAACTCAGTCTCCAGCTGACCAGCCTGAGCAGCAGGCAGAATCCACACTGGCATCAGCTGAAACTAGAGGTAGCAAGAAGAAGAAGAAACTTCGGAAGAAGAAGACGCTTCGGGCCACTCATGTTCCTGAGAACAGTGACACAGAGCAGGATGTGTTCACGGCTAAGCCTGCAAGGAAGGTCAAAACTGCAAAGGCAGCTAAAGGGGCGAAAGTGACAACCAGCCAGACTGGTCAGGAGCAAGGAACTGCCAGAGATGAGCCAGACAGCGATTCTTCTCTGGAAGTCCTGGAAGTCACAAATCCTCAGTTAGAAGTAGTTGCCATTGATACTTCTGAATCGGGAGACGAGAAACCTGACAGTCCATCGAAAAAAGATGCCTGGATCGCTGCAGAACAGAACCCCATAGAAACTTCTCGTTCTGGTTGTGATGAGGTTAGCTCTACCAGTGAGCTTGGCACCCGCTACAAGGATGGTGTTCCTGTGAGTGTGGCGGAAACCCAGACGGTGATCTCCATCAAAGCATCTAAGCACTCTTCAGAAATATCTTCAGAGCCGGGAGATGATGAGGAGCCTACAGAAGGAAGCTTCGAAGGACACCAGGCTGCAGTGAATGCAATTCAGATATTTGGAAACTTCCTGTATACTTGTTCAGCAGACACAACTGTCCGGGTTTATAATCTGGTGAGTCGAAAGTGTGTTGGTGTCTTTGAGGGACACACTTCCAAAGTGAACTGCCTTCTTGTCACTCACACCTCTGGGAAGAGTTCTGTCCTCTACACGGGTTCCAGTGACCACACCATCCGCTGCTACAATATTAAGACCCGAGAGTGTATGGAACAGTTACAGCTGGAAGACCGTGTCCTCTGCCTTCATAATAGATGGCGAACCCTCTATGCTGGACTAGCAAATGGCACTGTGGTCACATTCGACATAAAG

Peptide sequence:

MSALRTHRIQILQGLQETYEPPEHPDQAPCSLISREQRNSRSQTSFETALLPAPFFPGFLDPPPSHASLPSSGNPLQITTCTLQAHGTAPDSSVQIKQEPMSPEQEGNMNALPQGCASNVSKELLQTNRVVDDGSSVYPAIPAVIASESTENCQEVSKDLNFSVEQGNSRSKGNSPSCQSPDLPGINRGEETAKGSSGSEACSSSFLRLSFTPETPAEKETQSPADQPEQQAESTLASAETRGSKKKKKLRKKKTLRATHVPENSDTEQDVFTAKPARKVKTAKAAKGAKVTTSQTGQEQGTARDEPDSDSSLEVLEVTNPQLEVVAIDTSESGDEKPDSPSKKDAWIAAEQNPIETSRSGCDEVSSTSELGTRYKDGVPVSVAETQTVISIKASKHSSEISSEPGDDEEPTEGSFEGHQAAVNAIQIFGNFLYTCSADTTVRVYNLVSRKCVGVFEGHTSKVNCLLVTHTSGKSSVLYTGSSDHTIRCYNIKTRECMEQLQLEDRVLCLHNRWRTLYAGLANGTVVTFDIKITVEMSALRTHRIQILQGLQETYEPPEHPDQAPCSLISREQRNSRSQTSFETALLPAPFFPGFLDPPPSHASLPSSGNPLQITTCTLQAHGTAPDSSVQIKQEPMSPEQEGNMNALPQGCASNVSKELLQTNRVVDDGSSVYPAIPAVIASESTENCQEVSKDLNFSVEQGNSRSKGNSPSCQSPDLPGINRGEETAKGSSGSEACSSSFLRLSFTPETPAEKETQSPADQPEQQAESTLASAETRGSKKKKKLRKKKTLRATHVPENSDTEQDVFTAKPARKVKTAKAAKGAKVTTSQTGQEQGTARDEPDSDSSLEVLEVTNPQLEVVAIDTSESGDEKPDSPSKKDAWIAAEQNPIETSRSGCDEVSSTSELGTRYKDGVPVSVAETQTVISIKASKHSSEISSEPGDDEEPTEGSFEGHQAAVNAIQIFGNFLYTCSADTTVRVYNLVSRKCVGVFEGHTSKVNCLLVTHTSGKSSVLYTGSSDHTIRCYNIKTRECMEQLQLEDRVLCLHNRWRTLYAGLANGTVVTFDIK

IRESfinder result

IRESfinder score

0.566588105

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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Institute of Life sciences, Bhubaneswar, India

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