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mmu_circZfp106_1608
Basic information of circular RNA
PanCircBase ID:
mmu_circZfp106_1608
mm39_Chr. Position ID:
chr2|120349545|120358878|-
Gene name:
Zfp106
Transcript:
ENSMUST00000055241.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
15,14,13,12,11,10,9
Exon/intron offsets:
0,1346,3620,4456,4800,7684,9272
Genomic length:
9333
Exon/intron sizes in nt:
117,135,146,53,760,336,61
Flanking exon/introns:
chr2:120346586-120349545|chr2:120358878-120358955
Splice length:
1608
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
ATAACTGTGGAGATGAGTGCACTGAGGACTCACAGAATACAGATTCTACAAGGATTGCAAGAAACATATGAACCTCCTGAGCACCCAGACCAGGCTCCCTGTAGCCTCATATCACGAGAACAAAGGAACAGCCGATCTCAGACATCTTTTGAGACAGCTCTGCTGCCTGCACCCTTTTTCCCGGGGTTTCTGGATCCACCTCCTTCCCATGCATCTCTACCATCCTCTGGAAACCCTCTCCAAATAACCACGTGTACTTTACAAGCCCATGGCACTGCCCCTGATTCATCGGTTCAGATTAAACAAGAGCCCATGTCTCCTGAACAAGAGGGGAATATGAATGCTTTGCCACAAGGCTGTGCTTCCAATGTGTCCAAGGAATTACTGCAAACTAATAGAGTGGTCGATGACGGCTCTTCAGTTTACCCAGCCATCCCTGCAGTGATAGCATCAGAGTCAACAGAGAACTGCCAGGAGGTTAGCAAAGATCTGAATTTTTCTGTGGAGCAAGGAAATTCCAGAAGCAAAGGAAACTCTCCCTCTTGCCAGTCTCCTGATCTTCCTGGCATAAACAGAGGTGAAGAGACAGCCAAAGGCAGCAGTGGATCTGAAGCCTGCAGCAGTTCTTTTCTGAGATTGTCTTTCACTCCCGAAACGCCTGCAGAGAAGGAAACTCAGTCTCCAGCTGACCAGCCTGAGCAGCAGGCAGAATCCACACTGGCATCAGCTGAAACTAGAGGTAGCAAGAAGAAGAAGAAACTTCGGAAGAAGAAGACGCTTCGGGCCACTCATGTTCCTGAGAACAGTGACACAGAGCAGGATGTGTTCACGGCTAAGCCTGCAAGGAAGGTCAAAACTGCAAAGGCAGCTAAAGGGGCGAAAGTGACAACCAGCCAGACTGGTCAGGAGCAAGGAACTGCCAGAGATGAGCCAGACAGCGATTCTTCTCTGGAAGTCCTGGAAGTCACAAATCCTCAGTTAGAAGTAGTTGCCATTGATACTTCTGAATCGGGAGACGAGAAACCTGACAGTCCATCGAAAAAAGATGCCTGGATCGCTGCAGAACAGAACCCCATAGAAACTTCTCGTTCTGGTTGTGATGAGGTTAGCTCTACCAGTGAGCTTGGCACCCGCTACAAGGATGGTGTTCCTGTGAGTGTGGCGGAAACCCAGACGGTGATCTCCATCAAAGCATCTAAGCACTCTTCAGAAATATCTTCAGAGCCGGGAGATGATGAGGAGCCTACAGAAGGAAGCTTCGAAGGACACCAGGCTGCAGTGAATGCAATTCAGATATTTGGAAACTTCCTGTATACTTGTTCAGCAGACACAACTGTCCGGGTTTATAATCTGGTGAGTCGAAAGTGTGTTGGTGTCTTTGAGGGACACACTTCCAAAGTGAACTGCCTTCTTGTCACTCACACCTCTGGGAAGAGTTCTGTCCTCTACACGGGTTCCAGTGACCACACCATCCGCTGCTACAATATTAAGACCCGAGAGTGTATGGAACAGTTACAGCTGGAAGACCGTGTCCTCTGCCTTCATAATAGATGGCGAACCCTCTATGCTGGACTAGCAAATGGCACTGTGGTCACATTCGACATAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATGGCGAACCCTCTATGCTG
59.89
TGGGTGCTCAGGAGGTTCAT
60.84
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTGGAAGACCGTGTCCTCTG
59.76
TGGGTGCTCAGGAGGTTCAT
60.84
177
PCR template sequence:
ACAGTTACAGCTGGAAGACCGTGTCCTCTGCCTTCATAATAGATGGCGAACCCTCTATGCTGGACTAGCAAATGGCACTGTGGTCACATTCGACATAAAGATAACTGTGGAGATGAGTGCACTGAGGACTCACAGAATACAGATTCTACAAGGATTGCAAGAAACATATGAACCTCCTGAGCACCCAGACCAGGCTCCCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
16
Interacting miRNAs (#binding sites)
mmu-miR-362-5p(2), mmu-miR-199a-5p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-211-5p(1), mmu-miR-148a-3p(1), mmu-miR-298-5p(1), mmu-miR-216a-5p(1), mmu-miR-181b-5p(1), mmu-miR-22-3p(1), mmu-miR-34b-5p(1), mmu-miR-680(1), mmu-miR-5101(1), mmu-miR-697(1), mmu-miR-338-3p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ATTCGACATAAAGATAACTGTGGAGA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCZFP106_1608_ORF_1
1.0931
0.197567504
0.999999999
3204
ORF sequence:
ATGAGTGCACTGAGGACTCACAGAATACAGATTCTACAAGGATTGCAAGAAACATATGAACCTCCTGAGCACCCAGACCAGGCTCCCTGTAGCCTCATATCACGAGAACAAAGGAACAGCCGATCTCAGACATCTTTTGAGACAGCTCTGCTGCCTGCACCCTTTTTCCCGGGGTTTCTGGATCCACCTCCTTCCCATGCATCTCTACCATCCTCTGGAAACCCTCTCCAAATAACCACGTGTACTTTACAAGCCCATGGCACTGCCCCTGATTCATCGGTTCAGATTAAACAAGAGCCCATGTCTCCTGAACAAGAGGGGAATATGAATGCTTTGCCACAAGGCTGTGCTTCCAATGTGTCCAAGGAATTACTGCAAACTAATAGAGTGGTCGATGACGGCTCTTCAGTTTACCCAGCCATCCCTGCAGTGATAGCATCAGAGTCAACAGAGAACTGCCAGGAGGTTAGCAAAGATCTGAATTTTTCTGTGGAGCAAGGAAATTCCAGAAGCAAAGGAAACTCTCCCTCTTGCCAGTCTCCTGATCTTCCTGGCATAAACAGAGGTGAAGAGACAGCCAAAGGCAGCAGTGGATCTGAAGCCTGCAGCAGTTCTTTTCTGAGATTGTCTTTCACTCCCGAAACGCCTGCAGAGAAGGAAACTCAGTCTCCAGCTGACCAGCCTGAGCAGCAGGCAGAATCCACACTGGCATCAGCTGAAACTAGAGGTAGCAAGAAGAAGAAGAAACTTCGGAAGAAGAAGACGCTTCGGGCCACTCATGTTCCTGAGAACAGTGACACAGAGCAGGATGTGTTCACGGCTAAGCCTGCAAGGAAGGTCAAAACTGCAAAGGCAGCTAAAGGGGCGAAAGTGACAACCAGCCAGACTGGTCAGGAGCAAGGAACTGCCAGAGATGAGCCAGACAGCGATTCTTCTCTGGAAGTCCTGGAAGTCACAAATCCTCAGTTAGAAGTAGTTGCCATTGATACTTCTGAATCGGGAGACGAGAAACCTGACAGTCCATCGAAAAAAGATGCCTGGATCGCTGCAGAACAGAACCCCATAGAAACTTCTCGTTCTGGTTGTGATGAGGTTAGCTCTACCAGTGAGCTTGGCACCCGCTACAAGGATGGTGTTCCTGTGAGTGTGGCGGAAACCCAGACGGTGATCTCCATCAAAGCATCTAAGCACTCTTCAGAAATATCTTCAGAGCCGGGAGATGATGAGGAGCCTACAGAAGGAAGCTTCGAAGGACACCAGGCTGCAGTGAATGCAATTCAGATATTTGGAAACTTCCTGTATACTTGTTCAGCAGACACAACTGTCCGGGTTTATAATCTGGTGAGTCGAAAGTGTGTTGGTGTCTTTGAGGGACACACTTCCAAAGTGAACTGCCTTCTTGTCACTCACACCTCTGGGAAGAGTTCTGTCCTCTACACGGGTTCCAGTGACCACACCATCCGCTGCTACAATATTAAGACCCGAGAGTGTATGGAACAGTTACAGCTGGAAGACCGTGTCCTCTGCCTTCATAATAGATGGCGAACCCTCTATGCTGGACTAGCAAATGGCACTGTGGTCACATTCGACATAAAGATAACTGTGGAGATGAGTGCACTGAGGACTCACAGAATACAGATTCTACAAGGATTGCAAGAAACATATGAACCTCCTGAGCACCCAGACCAGGCTCCCTGTAGCCTCATATCACGAGAACAAAGGAACAGCCGATCTCAGACATCTTTTGAGACAGCTCTGCTGCCTGCACCCTTTTTCCCGGGGTTTCTGGATCCACCTCCTTCCCATGCATCTCTACCATCCTCTGGAAACCCTCTCCAAATAACCACGTGTACTTTACAAGCCCATGGCACTGCCCCTGATTCATCGGTTCAGATTAAACAAGAGCCCATGTCTCCTGAACAAGAGGGGAATATGAATGCTTTGCCACAAGGCTGTGCTTCCAATGTGTCCAAGGAATTACTGCAAACTAATAGAGTGGTCGATGACGGCTCTTCAGTTTACCCAGCCATCCCTGCAGTGATAGCATCAGAGTCAACAGAGAACTGCCAGGAGGTTAGCAAAGATCTGAATTTTTCTGTGGAGCAAGGAAATTCCAGAAGCAAAGGAAACTCTCCCTCTTGCCAGTCTCCTGATCTTCCTGGCATAAACAGAGGTGAAGAGACAGCCAAAGGCAGCAGTGGATCTGAAGCCTGCAGCAGTTCTTTTCTGAGATTGTCTTTCACTCCCGAAACGCCTGCAGAGAAGGAAACTCAGTCTCCAGCTGACCAGCCTGAGCAGCAGGCAGAATCCACACTGGCATCAGCTGAAACTAGAGGTAGCAAGAAGAAGAAGAAACTTCGGAAGAAGAAGACGCTTCGGGCCACTCATGTTCCTGAGAACAGTGACACAGAGCAGGATGTGTTCACGGCTAAGCCTGCAAGGAAGGTCAAAACTGCAAAGGCAGCTAAAGGGGCGAAAGTGACAACCAGCCAGACTGGTCAGGAGCAAGGAACTGCCAGAGATGAGCCAGACAGCGATTCTTCTCTGGAAGTCCTGGAAGTCACAAATCCTCAGTTAGAAGTAGTTGCCATTGATACTTCTGAATCGGGAGACGAGAAACCTGACAGTCCATCGAAAAAAGATGCCTGGATCGCTGCAGAACAGAACCCCATAGAAACTTCTCGTTCTGGTTGTGATGAGGTTAGCTCTACCAGTGAGCTTGGCACCCGCTACAAGGATGGTGTTCCTGTGAGTGTGGCGGAAACCCAGACGGTGATCTCCATCAAAGCATCTAAGCACTCTTCAGAAATATCTTCAGAGCCGGGAGATGATGAGGAGCCTACAGAAGGAAGCTTCGAAGGACACCAGGCTGCAGTGAATGCAATTCAGATATTTGGAAACTTCCTGTATACTTGTTCAGCAGACACAACTGTCCGGGTTTATAATCTGGTGAGTCGAAAGTGTGTTGGTGTCTTTGAGGGACACACTTCCAAAGTGAACTGCCTTCTTGTCACTCACACCTCTGGGAAGAGTTCTGTCCTCTACACGGGTTCCAGTGACCACACCATCCGCTGCTACAATATTAAGACCCGAGAGTGTATGGAACAGTTACAGCTGGAAGACCGTGTCCTCTGCCTTCATAATAGATGGCGAACCCTCTATGCTGGACTAGCAAATGGCACTGTGGTCACATTCGACATAAAG
Peptide sequence:
MSALRTHRIQILQGLQETYEPPEHPDQAPCSLISREQRNSRSQTSFETALLPAPFFPGFLDPPPSHASLPSSGNPLQITTCTLQAHGTAPDSSVQIKQEPMSPEQEGNMNALPQGCASNVSKELLQTNRVVDDGSSVYPAIPAVIASESTENCQEVSKDLNFSVEQGNSRSKGNSPSCQSPDLPGINRGEETAKGSSGSEACSSSFLRLSFTPETPAEKETQSPADQPEQQAESTLASAETRGSKKKKKLRKKKTLRATHVPENSDTEQDVFTAKPARKVKTAKAAKGAKVTTSQTGQEQGTARDEPDSDSSLEVLEVTNPQLEVVAIDTSESGDEKPDSPSKKDAWIAAEQNPIETSRSGCDEVSSTSELGTRYKDGVPVSVAETQTVISIKASKHSSEISSEPGDDEEPTEGSFEGHQAAVNAIQIFGNFLYTCSADTTVRVYNLVSRKCVGVFEGHTSKVNCLLVTHTSGKSSVLYTGSSDHTIRCYNIKTRECMEQLQLEDRVLCLHNRWRTLYAGLANGTVVTFDIKITVEMSALRTHRIQILQGLQETYEPPEHPDQAPCSLISREQRNSRSQTSFETALLPAPFFPGFLDPPPSHASLPSSGNPLQITTCTLQAHGTAPDSSVQIKQEPMSPEQEGNMNALPQGCASNVSKELLQTNRVVDDGSSVYPAIPAVIASESTENCQEVSKDLNFSVEQGNSRSKGNSPSCQSPDLPGINRGEETAKGSSGSEACSSSFLRLSFTPETPAEKETQSPADQPEQQAESTLASAETRGSKKKKKLRKKKTLRATHVPENSDTEQDVFTAKPARKVKTAKAAKGAKVTTSQTGQEQGTARDEPDSDSSLEVLEVTNPQLEVVAIDTSESGDEKPDSPSKKDAWIAAEQNPIETSRSGCDEVSSTSELGTRYKDGVPVSVAETQTVISIKASKHSSEISSEPGDDEEPTEGSFEGHQAAVNAIQIFGNFLYTCSADTTVRVYNLVSRKCVGVFEGHTSKVNCLLVTHTSGKSSVLYTGSSDHTIRCYNIKTRECMEQLQLEDRVLCLHNRWRTLYAGLANGTVVTFDIK
IRESfinder result
IRESfinder score
0.566588105
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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