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mmu_circZer1_2124
Basic information of circular RNA
PanCircBase ID:
mmu_circZer1_2124
mm39_Chr. Position ID:
chr2|29990325|30001344|-
Gene name:
Zer1
Transcript:
ENSMUST00000044751.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
13
Exon/intron indexes:
15,14,13,12,11,10,9,8,7,6,5,4,3
Exon/intron offsets:
0,722,1451,2415,3003,3225,4493,7181,7662,7907,9891,10348,10868
Genomic length:
11019
Exon/intron sizes in nt:
10,39,81,89,11,61,20,40,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr2:29988855-29990325|chr2:30001344-30003257
Splice length:
2124
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATGTGGAGCTGGTCAGTGCTGCCTGCACTTTTGAGCCACACGAGACTTTCTTCAGCCTCTTCTCAGACCCCCGCAGTACTCGGCTCACTCGCATCCACCTTCGTGAGGACCTGGTGCAGGACCAGGACCTGGAAGCCATTCGCAAACAGGACCTGGTGGAGCTCTACCTGACCAACTGCGAGAAGCTGTCCGCCAAGAGCCTGCAGACACTGCGGAGCTTCCGACACAGTCTGGTGTCCTTGAGTCTCTCCGGCTGTGCCAACATCTTCTATGAGGAGGACAACCCAGGCGGCTGTGAGGATGAGTGCCTGGTCAACCCCACCTGCCAGGTGCTGGTCAAGGACTTCACCTTCGAGGGCTTCAGCCGCCTGCGCTTCCTCAACCTGGGCCGCATGATTGACGGTATCCCCGTAGAGTCACTGCTTCGGCCACTCAACTCCCTGGCCGCCTTGGACCTCTCAGGCATCCAGACAAGTGATGCCACTTTCCTAACACAGTGGAAGGACAGTCTGATGTCCCTTGTGCTCTACAACATGGACCTTTCAGATGACCACATCCGTGTCATTGTCCAGCTGCACAAGCTGCGGAGTAAGATCCTGACCTGTGGTCCCCACCTGATCTCCAGCCACCTGGACATCTCCCGAGACCGCCTCTCCAGCTACTACAAGTTCAAGCTGACTCGGAAGGTGCTCAGCCTCCTAGTGCAGAAGCTGGGGAACCTAATGTCACTGGACATCTCTGGTCACATGATCCTAGAGAACTGCAGCATCTCCAAGACAGATGAGGAGGCAGGGCAGACCAGCACCGAGCCATCCAAGAGCAGCATCATGCCCTTCCGGGCTCTGAAGAGGCCACTGCAGTTCCTTGGGCTCTTTGAGACCTCATTGTGTCGTCTTACGCACATTCCAGCCTACAAAGTGAGTGGTGACAAAAATGAAGAGCAGGTGCTGAACGCCATCGAGGCCTACACAGAGCACCGGCCCGAGATCACATCCAGGGCCATCAACCTGCTGTTTGACATTGCACGCATTGAACGCTGCAACCAGCTTCTGCGGGCCCTGAAGCTGGTCATCACAGCCCTCAAGTGTCACAAGTATGACAAAAACATTCAAGTGACCGGCAGTGCTGCCCTCTTCTACCTGACCAACTCCGAGTACCGCTCGGAGCAGAGCGTCAAGTTGCGGCGGCAGGTCATCCAGGTGGTGCTGAATGGCATGGAGTCCTACCAGGAGGTGACGGTGCAGCGGAACTGCTGTCTGACCCTCTGCAACTTCAGCATCCCCGAGGAACTGGAGTTCCAGTACCGCCGGGTGAACGAGCTGCTGCTGGGCATCCTCAGCCCCACGCGTCAGGACGAGTCAATCCAGCGGATCGCTGTGCACTTGTGCAATGCCCTGGTCTGCCAGGTGGACAATGACCATAAGGAGGCTGTAGGCAAGATGGGCTTCGTCGTGACCATGTTGAAGCTGATCCAGAAGAAACTGCTGGACAAGACGTGTGACCAGGTCATGGAGTTCTCCTGGAGTGCTCTGTGGAACATCACAGATGAGACACCTGACAACTGCGAGATGTTCCTCAACTTCAATGGCATGAAGCTCTTTCTCGACTGCCTGAAGGAGTTCCCAGAGAAGCAGGAGCTACACCGTAACATGCTAGGGCTCTTGGGGAATGTGGCAGAGGTAAAGGAGCTGCGACCTCAGTTGATGACCTCCCAGTTCATCAGCGTCTTCAGCAACCTGCTGGAGAGCAAGGCCGACGGCATTGAGGTTTCTTACAACGCCTGTGGTGTCCTCTCTCACATCATGTTTGATGGGCCTGAGGCCTGGGGTGTCTGTGAACCTCAGAGGGCAGAGGTGGAGGATCGTATGTGGGCGGCCATCCAGAGCTGGGATATCAACTCCCGAAGGAATATCAACTACAGGTCCTTTGAGCCAATCCTCCGCCTCCTTCCCCAGGGTATTTCTCCAGTCAGCCAGCACTGGGCCACCTGGGCCCTGTACAACCTCGTGTCTGTCTACCCTGACAAGTACTGCCCCCTGCTGATTAAAGAAGGTGGGATGCCCCTGCTGAGAGACTTGATCAAGATGGCAACTGCCCGGCAGGAAACCAAGGAGATGGCCCG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACTGCCCCCTGCTGATTAAA
59.3
CTCGTGTGGCTCAAAAGTGC
60.04
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTACTGCCCCCTGCTGATTA
59.16
CTCGTGTGGCTCAAAAGTGC
60.04
142
PCR template sequence:
ACAAGTACTGCCCCCTGCTGATTAAAGAAGGTGGGATGCCCCTGCTGAGAGACTTGATCAAGATGGCAACTGCCCGGCAGGAAACCAAGGAGATGGCCCGGTATGTGGAGCTGGTCAGTGCTGCCTGCACTTTTGAGCCACACGAGACTTTCTTCAGCCTCTTCTCAGACCCCCGCAGTACTCGGCTCACTCGCATCCAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
24
Interacting miRNAs (#binding sites)
mmu-miR-210-3p(1), mmu-miR-20b-5p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-206-3p(1), mmu-miR-135a-5p(1), mmu-miR-92a-3p(1), mmu-miR-322-5p(1), mmu-miR-106b-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-146a-5p(1), mmu-miR-130a-3p(1), mmu-miR-298-5p(1), mmu-miR-326-3p(1), mmu-miR-676-3p(1), mmu-miR-539-5p(1), mmu-miR-540-3p(1), mmu-miR-490-3p(1), mmu-miR-1904(1), mmu-miR-542-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AGGAGATGGCCCGGTATGTGGAGCTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCZER1_2124_ORF_1
1.2968
0.531102725
1
3852
ORF sequence:
ATGATTGACGGTATCCCCGTAGAGTCACTGCTTCGGCCACTCAACTCCCTGGCCGCCTTGGACCTCTCAGGCATCCAGACAAGTGATGCCACTTTCCTAACACAGTGGAAGGACAGTCTGATGTCCCTTGTGCTCTACAACATGGACCTTTCAGATGACCACATCCGTGTCATTGTCCAGCTGCACAAGCTGCGGAGTAAGATCCTGACCTGTGGTCCCCACCTGATCTCCAGCCACCTGGACATCTCCCGAGACCGCCTCTCCAGCTACTACAAGTTCAAGCTGACTCGGAAGGTGCTCAGCCTCCTAGTGCAGAAGCTGGGGAACCTAATGTCACTGGACATCTCTGGTCACATGATCCTAGAGAACTGCAGCATCTCCAAGACAGATGAGGAGGCAGGGCAGACCAGCACCGAGCCATCCAAGAGCAGCATCATGCCCTTCCGGGCTCTGAAGAGGCCACTGCAGTTCCTTGGGCTCTTTGAGACCTCATTGTGTCGTCTTACGCACATTCCAGCCTACAAAGTGAGTGGTGACAAAAATGAAGAGCAGGTGCTGAACGCCATCGAGGCCTACACAGAGCACCGGCCCGAGATCACATCCAGGGCCATCAACCTGCTGTTTGACATTGCACGCATTGAACGCTGCAACCAGCTTCTGCGGGCCCTGAAGCTGGTCATCACAGCCCTCAAGTGTCACAAGTATGACAAAAACATTCAAGTGACCGGCAGTGCTGCCCTCTTCTACCTGACCAACTCCGAGTACCGCTCGGAGCAGAGCGTCAAGTTGCGGCGGCAGGTCATCCAGGTGGTGCTGAATGGCATGGAGTCCTACCAGGAGGTGACGGTGCAGCGGAACTGCTGTCTGACCCTCTGCAACTTCAGCATCCCCGAGGAACTGGAGTTCCAGTACCGCCGGGTGAACGAGCTGCTGCTGGGCATCCTCAGCCCCACGCGTCAGGACGAGTCAATCCAGCGGATCGCTGTGCACTTGTGCAATGCCCTGGTCTGCCAGGTGGACAATGACCATAAGGAGGCTGTAGGCAAGATGGGCTTCGTCGTGACCATGTTGAAGCTGATCCAGAAGAAACTGCTGGACAAGACGTGTGACCAGGTCATGGAGTTCTCCTGGAGTGCTCTGTGGAACATCACAGATGAGACACCTGACAACTGCGAGATGTTCCTCAACTTCAATGGCATGAAGCTCTTTCTCGACTGCCTGAAGGAGTTCCCAGAGAAGCAGGAGCTACACCGTAACATGCTAGGGCTCTTGGGGAATGTGGCAGAGGTAAAGGAGCTGCGACCTCAGTTGATGACCTCCCAGTTCATCAGCGTCTTCAGCAACCTGCTGGAGAGCAAGGCCGACGGCATTGAGGTTTCTTACAACGCCTGTGGTGTCCTCTCTCACATCATGTTTGATGGGCCTGAGGCCTGGGGTGTCTGTGAACCTCAGAGGGCAGAGGTGGAGGATCGTATGTGGGCGGCCATCCAGAGCTGGGATATCAACTCCCGAAGGAATATCAACTACAGGTCCTTTGAGCCAATCCTCCGCCTCCTTCCCCAGGGTATTTCTCCAGTCAGCCAGCACTGGGCCACCTGGGCCCTGTACAACCTCGTGTCTGTCTACCCTGACAAGTACTGCCCCCTGCTGATTAAAGAAGGTGGGATGCCCCTGCTGAGAGACTTGATCAAGATGGCAACTGCCCGGCAGGAAACCAAGGAGATGGCCCGGTATGTGGAGCTGGTCAGTGCTGCCTGCACTTTTGAGCCACACGAGACTTTCTTCAGCCTCTTCTCAGACCCCCGCAGTACTCGGCTCACTCGCATCCACCTTCGTGAGGACCTGGTGCAGGACCAGGACCTGGAAGCCATTCGCAAACAGGACCTGGTGGAGCTCTACCTGACCAACTGCGAGAAGCTGTCCGCCAAGAGCCTGCAGACACTGCGGAGCTTCCGACACAGTCTGGTGTCCTTGAGTCTCTCCGGCTGTGCCAACATCTTCTATGAGGAGGACAACCCAGGCGGCTGTGAGGATGAGTGCCTGGTCAACCCCACCTGCCAGGTGCTGGTCAAGGACTTCACCTTCGAGGGCTTCAGCCGCCTGCGCTTCCTCAACCTGGGCCGCATGATTGACGGTATCCCCGTAGAGTCACTGCTTCGGCCACTCAACTCCCTGGCCGCCTTGGACCTCTCAGGCATCCAGACAAGTGATGCCACTTTCCTAACACAGTGGAAGGACAGTCTGATGTCCCTTGTGCTCTACAACATGGACCTTTCAGATGACCACATCCGTGTCATTGTCCAGCTGCACAAGCTGCGGAGTAAGATCCTGACCTGTGGTCCCCACCTGATCTCCAGCCACCTGGACATCTCCCGAGACCGCCTCTCCAGCTACTACAAGTTCAAGCTGACTCGGAAGGTGCTCAGCCTCCTAGTGCAGAAGCTGGGGAACCTAATGTCACTGGACATCTCTGGTCACATGATCCTAGAGAACTGCAGCATCTCCAAGACAGATGAGGAGGCAGGGCAGACCAGCACCGAGCCATCCAAGAGCAGCATCATGCCCTTCCGGGCTCTGAAGAGGCCACTGCAGTTCCTTGGGCTCTTTGAGACCTCATTGTGTCGTCTTACGCACATTCCAGCCTACAAAGTGAGTGGTGACAAAAATGAAGAGCAGGTGCTGAACGCCATCGAGGCCTACACAGAGCACCGGCCCGAGATCACATCCAGGGCCATCAACCTGCTGTTTGACATTGCACGCATTGAACGCTGCAACCAGCTTCTGCGGGCCCTGAAGCTGGTCATCACAGCCCTCAAGTGTCACAAGTATGACAAAAACATTCAAGTGACCGGCAGTGCTGCCCTCTTCTACCTGACCAACTCCGAGTACCGCTCGGAGCAGAGCGTCAAGTTGCGGCGGCAGGTCATCCAGGTGGTGCTGAATGGCATGGAGTCCTACCAGGAGGTGACGGTGCAGCGGAACTGCTGTCTGACCCTCTGCAACTTCAGCATCCCCGAGGAACTGGAGTTCCAGTACCGCCGGGTGAACGAGCTGCTGCTGGGCATCCTCAGCCCCACGCGTCAGGACGAGTCAATCCAGCGGATCGCTGTGCACTTGTGCAATGCCCTGGTCTGCCAGGTGGACAATGACCATAAGGAGGCTGTAGGCAAGATGGGCTTCGTCGTGACCATGTTGAAGCTGATCCAGAAGAAACTGCTGGACAAGACGTGTGACCAGGTCATGGAGTTCTCCTGGAGTGCTCTGTGGAACATCACAGATGAGACACCTGACAACTGCGAGATGTTCCTCAACTTCAATGGCATGAAGCTCTTTCTCGACTGCCTGAAGGAGTTCCCAGAGAAGCAGGAGCTACACCGTAACATGCTAGGGCTCTTGGGGAATGTGGCAGAGGTAAAGGAGCTGCGACCTCAGTTGATGACCTCCCAGTTCATCAGCGTCTTCAGCAACCTGCTGGAGAGCAAGGCCGACGGCATTGAGGTTTCTTACAACGCCTGTGGTGTCCTCTCTCACATCATGTTTGATGGGCCTGAGGCCTGGGGTGTCTGTGAACCTCAGAGGGCAGAGGTGGAGGATCGTATGTGGGCGGCCATCCAGAGCTGGGATATCAACTCCCGAAGGAATATCAACTACAGGTCCTTTGAGCCAATCCTCCGCCTCCTTCCCCAGGGTATTTCTCCAGTCAGCCAGCACTGGGCCACCTGGGCCCTGTACAACCTCGTGTCTGTCTACCCTGACAAGTACTGCCCCCTGCTGATTAAAGAAGGTGGGATGCCCCTGCTGAGAGACTTGATCAAGATGGCAACTGCCCGGCAGGAAACCAAGGAGATGGCC
Peptide sequence:
MIDGIPVESLLRPLNSLAALDLSGIQTSDATFLTQWKDSLMSLVLYNMDLSDDHIRVIVQLHKLRSKILTCGPHLISSHLDISRDRLSSYYKFKLTRKVLSLLVQKLGNLMSLDISGHMILENCSISKTDEEAGQTSTEPSKSSIMPFRALKRPLQFLGLFETSLCRLTHIPAYKVSGDKNEEQVLNAIEAYTEHRPEITSRAINLLFDIARIERCNQLLRALKLVITALKCHKYDKNIQVTGSAALFYLTNSEYRSEQSVKLRRQVIQVVLNGMESYQEVTVQRNCCLTLCNFSIPEELEFQYRRVNELLLGILSPTRQDESIQRIAVHLCNALVCQVDNDHKEAVGKMGFVVTMLKLIQKKLLDKTCDQVMEFSWSALWNITDETPDNCEMFLNFNGMKLFLDCLKEFPEKQELHRNMLGLLGNVAEVKELRPQLMTSQFISVFSNLLESKADGIEVSYNACGVLSHIMFDGPEAWGVCEPQRAEVEDRMWAAIQSWDINSRRNINYRSFEPILRLLPQGISPVSQHWATWALYNLVSVYPDKYCPLLIKEGGMPLLRDLIKMATARQETKEMARYVELVSAACTFEPHETFFSLFSDPRSTRLTRIHLREDLVQDQDLEAIRKQDLVELYLTNCEKLSAKSLQTLRSFRHSLVSLSLSGCANIFYEEDNPGGCEDECLVNPTCQVLVKDFTFEGFSRLRFLNLGRMIDGIPVESLLRPLNSLAALDLSGIQTSDATFLTQWKDSLMSLVLYNMDLSDDHIRVIVQLHKLRSKILTCGPHLISSHLDISRDRLSSYYKFKLTRKVLSLLVQKLGNLMSLDISGHMILENCSISKTDEEAGQTSTEPSKSSIMPFRALKRPLQFLGLFETSLCRLTHIPAYKVSGDKNEEQVLNAIEAYTEHRPEITSRAINLLFDIARIERCNQLLRALKLVITALKCHKYDKNIQVTGSAALFYLTNSEYRSEQSVKLRRQVIQVVLNGMESYQEVTVQRNCCLTLCNFSIPEELEFQYRRVNELLLGILSPTRQDESIQRIAVHLCNALVCQVDNDHKEAVGKMGFVVTMLKLIQKKLLDKTCDQVMEFSWSALWNITDETPDNCEMFLNFNGMKLFLDCLKEFPEKQELHRNMLGLLGNVAEVKELRPQLMTSQFISVFSNLLESKADGIEVSYNACGVLSHIMFDGPEAWGVCEPQRAEVEDRMWAAIQSWDINSRRNINYRSFEPILRLLPQGISPVSQHWATWALYNLVSVYPDKYCPLLIKEGGMPLLRDLIKMATARQETKEMA
IRESfinder result
IRESfinder score
0.345452208
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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