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mmu_circZbtb8os_320

Basic information of circular RNA
PanCircBase ID:

mmu_circZbtb8os_320

mm39_Chr. Position ID:

chr4|129234520|129238041|+

Gene name:

Zbtb8os

Transcript:

ENSMUST00000141235.8

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

5

Exon/intron indexes:

2,3,4,5,6

Exon/intron offsets:

0,749,1013,2393,3484

Genomic length:

3521

Exon/intron sizes in nt:

25,122,83,53,37

Flanking exon/introns:

chr4:129229932-129234520|chr4:129238041-129240596

Splice length:

320

Other database IDs:

circBase: hsa_circ_0011424, CIRCpedia: HSA_CIRCpedia_31437

Human Ortholog IDs:
Mature spliced Sequence:

ATTTGGATCATACGGCTGATGTCCAGTTACACGCATGGGGAGACACTCTGGAGGAAGCATTTGAACAGTGTGCCATGGCCATGTTTGGTTACATGACAGATACTGGGACTGTGGAGCCCCTCCGCACCGTGGAAGTAGAAACCCAAGGGGACGACCTGCAGTCTCTGCTGTTTCACTTTTTGGACGAGTGGCTTTACAAGTTCAGCGCTGATGAGTACTTCATACCCCGGGAAGTGAAAGTACTTAATATTGATCAGAAAAATTTCAAGTTACGATCCATTGGGTGGGGAGAAGAGTTCTCACTGTCCAAGCACCCTCAG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

ACCCCGGGAAGTGAAAGTAC

59.31

TGTCTCCCCATGCGTGTAAC

60.04

142

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

ACCCCGGGAAGTGAAAGTAC

59.31

GTGTCTCCCCATGCGTGTAA

60.04

143

PCR template sequence:

CATACCCCGGGAAGTGAAAGTACTTAATATTGATCAGAAAAATTTCAAGTTACGATCCATTGGGTGGGGAGAAGAGTTCTCACTGTCCAAGCACCCTCAGATTTGGATCATACGGCTGATGTCCAGTTACACGCATGGGGAGACACTCTGGAGGAAGCATTTGAACAGTGTGCCATGGCCATGTTTGGTTACATGACAGA

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

3

Interacting miRNAs (#binding sites)

mmu-miR-183-5p(1), mmu-miR-207(1), mmu-miR-146b-5p(1)

siRNAs for circular RNA silencing
Junction sequence

CAAGCACCCTCAGATTTGGATCATAC

siRNA sets

TATGATCCAAATCTGAGGG, GTATGATCCAAATCTGAGG

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCZBTB8OS_320_ORF_1

1.012

0.150294891

0.427112295

342

ORF sequence:

ATGGCCATGTTTGGTTACATGACAGATACTGGGACTGTGGAGCCCCTCCGCACCGTGGAAGTAGAAACCCAAGGGGACGACCTGCAGTCTCTGCTGTTTCACTTTTTGGACGAGTGGCTTTACAAGTTCAGCGCTGATGAGTACTTCATACCCCGGGAAGTGAAAGTACTTAATATTGATCAGAAAAATTTCAAGTTACGATCCATTGGGTGGGGAGAAGAGTTCTCACTGTCCAAGCACCCTCAGATTTGGATCATACGGCTGATGTCCAGTTACACGCATGGGGAGACACTCTGGAGGAAGCATTTGAACAGTGTGCCATGGCCATGTTTGGTTACATGA

Peptide sequence:

MAMFGYMTDTGTVEPLRTVEVETQGDDLQSLLFHFLDEWLYKFSADEYFIPREVKVLNIDQKNFKLRSIGWGEEFSLSKHPQIWIIRLMSSYTHGETLWRKHLNSVPWPCLVT

IRESfinder result

IRESfinder score

0.55230663

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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Institute of Life sciences, Bhubaneswar, India

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