top of page
mmu_circZbtb20_93
Basic information of circular RNA
PanCircBase ID:
mmu_circZbtb20_93
mm39_Chr. Position ID:
chr16|42892786|42967306|+
Gene name:
Zbtb20
Transcript:
ENSMUST00000151290.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
4,5
Exon/intron offsets:
0,74473
Genomic length:
74520
Exon/intron sizes in nt:
46,47
Flanking exon/introns:
chr16:42845350-42892786|chr16:42967306-43013827
Splice length:
93
Other database IDs:
circAtlas: mmu-Zbtb20_0015
Human Ortholog IDs:
Mature spliced Sequence:
AGTTCTTGATAAATTGCAAGTCTCTTTGTGCCTCATAGCTGCACAGGAATGGCTGTTTGATATTGGAAAACCAGTTGGTGTGCTCTTCCTTGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGTTGGTGTGCTCTTCCT
59.89
TGCAGCTATGAGGCACAAAGA
60
66
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGTGTGCTCTTCCTTGGAG
59.6
TGCAGCTATGAGGCACAAAGA
60
61
PCR template sequence:
AATGGCTGTTTGATATTGGAAAACCAGTTGGTGTGCTCTTCCTTGGAGTTCTTGATAAATTGCAAGTCTCTTTGTGCCTCATAGCTGCACAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
TGCTCTTCCTTGGAGTTCTTGATAAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.791559113
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page