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mmu_circYeats2_2592
Basic information of circular RNA
PanCircBase ID:
mmu_circYeats2_2592
mm39_Chr. Position ID:
chr16|20005000|20041691|+
Gene name:
Yeats2
Transcript:
ENSMUST00000090052.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
17
Exon/intron indexes:
10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26
Exon/intron offsets:
0,3088,4135,6908,7393,17404,19833,21373,22168,23781,25318,27016,28140,32133,33367,35423,36489
Genomic length:
36691
Exon/intron sizes in nt:
24,01,59,10,41,08,18,30,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr16:19998425-20005000|chr16:20041691-20046462
Splice length:
2592
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GATTCCCAGAGACCACTGAAGCTGAGAGACACAGTACATTTTATTCTTTACCATCTTCGTTGGAAAGAACACCCACTAAAGTGACAACAGCACAGAAGGTCACCTTCAGTTCACATGGGAATTCTGCCTTCCAGCCTATCGCATCAAGCTGCAAAATTGTGCCACAAAGTCAGGTGCCTAATCCCGAGTCACCTGGCAAGTCCTTTCAGCCAATCACCATGAGCTGTAAGATTGTCTCAGGTTCTCCAATATCAACTCCAAGCCCATCACCATTACCTCGCACACCAACTTCCACTCCAGTTCATTTGAAGCAAGGCACTGCCAGTTCTGGTGTCAGCAACCCTCATGTTATTGTGGATAAGCCTGGGCAGGTCATTGGAGCCTCCACTCCAAGTACAGGAAGTCCTACAAGCAAGCTCCCAGTGGCCTCTCAGGCTTCCCAAGGAACAGGGTCCCCTATTCCTAAGATTCATGGAAGTAGTTTTTTGACATCTACTGTGAAGCAGGAGGAGTCTTTATTCGCATCTATGCCACCTCTTTGCCCAATTGGTAGTCACCCTAAAGTGCAGAGCCCCAAAGCTGTGACTGGAGGACTTGGGGCTTTCACAAAGGTGATCATCAAACAGGAACCTGGAGAAGCTCCTCATGTGTCCACAACAGGAGCTGCGAGCCAGTCAGCATTCCCTCAGTATGTGACCGTGAAAGGGGGTCACATGATAGCTGTGTCCCCTCAAAAGCAGGTCATAAGTGCTGGAGAAGGGACCACTCAGTCACCAAAGATTGCACCCTCCAAGGTTGTTGGTGTGCCTGTTGGCTCTGCCTTACCTTCCACAGTGAAGCAGGCTGTAGCAATCAGTAGTGGCCAAATCCTTGTCGCCAAGGCCAGCTCTTCTGTCACCAAAGCTGTTGGTCCAAAACAAGTTGTGACCCAAGGAGTTGCCAAAGCAATCGTGAGTGGAGGTGGAGGGACCATTGTCGCTCAGCCAGTGCAGACCTTAACCAAGACTCAGGTCACAGCTGCTGGGCCGCAGAAGAGTGGCTCCCAGGGCTCAGTAATGGCCACCTTGCAACTACCAGCCACTAATTTGGCCAACCTGGCGAACTTGCCTCCGGGCACTAAACTGTACCTTACCACGAACAGCAAGAACCCCTCAGGAAAAGGGAAGCTGCTGCTGATTCCTCAAGGAGCCATCCTGCGAGCTACCAACAATGCCAACCTGCAGTCTGGCTCGGCTGCTGCTGGTGGCAGTGGCAGCAGTGGTGCAGGGGGAGGCAGTGGAGGTGGCGGTGGCAGCGGAGCAGGAGGAACCCCAAGCACCTCTGGCCCAGGAGGGGGCCCCCAGCACCTGACTTACACATCCTACATCCTCAAGCAAACCCCCCAGGGTACATTTTTAGTTGGCCAACCATCACCCCAAACACCTGGAAAACAACTGACTACTGCATCGGTGGTTCAAGGAACACTGGGAGTCAGTTCATCATCTGCACAGGGACAACAGACACTGAAAGTCATCTCTGGACAGAAAACCACTTTGTTTACACAGGCAGCCACTGCTGGGCAGGCATCGCTGCTGAAGTTACCAGACAACACCCTGAAGTCAGTGCCAGCAGCTCCACAGCTCGCCAAGCCTGGGACCACGATGCTTCGAGTGGCAGGGGGGGTGATCACAGCTGCTCCCTCCCCTGCAGTGGCCTTCTCAGCAAATGGTGCTGTACACCAGTCTGAAGGATCAACCCCTGTGTCATCCTCTGTTGGTTCTATAATCAAAACTCCTGGTCAGCCACAAGTGTGTGTAAGCCAGGCCACCATGGCAACCTGCAAGGGCCCCGCTGCTGTTGCCGGCACTGCCGCGTCCCTGGTATCTGCACCAAGCTCCATCTCTGGGAAAGCCACAGTGTCAGGGTTGCTAAAAGTTCATTCCGCTCAGTCCAGTCCCCAGCAGGCTGTCCTGACAATTCCCAGTCAACTCAAGCCACTAAGCATCAATACCTCTGGTGGCGTGCAGACTGTCTTGATGCCTGTGAATAAAGTGGTTCAGTCGTTTTCTACCAGCAAATTACCTACTACTGTCCTGCCCATAAGTGTTCCAAATCAAGCTGCCCCCAGCTCTGCTCCAGTAGCAATTGCCAAAGTGAAGACTGAACCAGAAACTCCTGGGCCAAACTGCATCTCACAGGAGAACCAGGTAGCAGTGAAAACAGAAGAGAGCTCTGAGCTAAGCAACTACGTCATTAAGGTAGACCATTTGGAGACCATCCAGCAGCTCCTGACAGCAGTAGTGAAGAAGATCCCATTAATTACTGCAAAAGGTGATGATGCCAGCTGTTTTTCTGCGAAGTCCTTGGAGCAGTATTACGGCTGGAACATTGGGAAGAGGAGAGCTGCTGAGTGGCAAAGAGCAATGACAGTACGAAAAGTGTTACAAGAAATCCTGGAGAAGAATCCAAGATTCCACCACTTGACTCCCCTCAAGACCAAGCACATTGCTCACTGGTGCCGCTGCCACGGTTACACCCCACCAGACCCCGAGAGCCTGCGACATGATGGAGACTCCATTGAGGATGTGCTGACCCAGATTGACAGTGAACCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCGACATGATGGAGACTCC
59.54
ACCTTCTGTGCTGTTGTCACT
59.79
157
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCTGCGACATGATGGAGACT
59.54
ACCTTCTGTGCTGTTGTCACT
59.79
159
PCR template sequence:
TGGTGCCGCTGCCACGGTTACACCCCACCAGACCCCGAGAGCCTGCGACATGATGGAGACTCCATTGAGGATGTGCTGACCCAGATTGACAGTGAACCAGGATTCCCAGAGACCACTGAAGCTGAGAGACACAGTACATTTTATTCTTTACCATCTTCGTTGGAAAGAACACCCACTAAAGTGACAACAGCACAGAAGGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
25
Interacting miRNAs (#binding sites)
mmu-miR-705(2), mmu-miR-207(2), mmu-miR-9-5p(1), mmu-miR-140-5p(1), mmu-miR-134-5p(1), mmu-miR-296-5p(1), mmu-miR-199a-5p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-322-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-18a-5p(1), mmu-miR-214-3p(1), mmu-miR-503-5p(1), mmu-miR-149-5p(1), mmu-miR-434-3p(1), mmu-miR-199b-3p(1), mmu-miR-218-5p(1), mmu-miR-199a-3p(1), mmu-miR-370-3p(1), mmu-miR-324-3p(1), mmu-miR-342-5p(1), mmu-miR-673-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GACAGTGAACCAGGATTCCCAGAGAC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCYEATS2_2592_ORF_1
1.133
0.172950997
1
4965
ORF sequence:
ATGAGCTGTAAGATTGTCTCAGGTTCTCCAATATCAACTCCAAGCCCATCACCATTACCTCGCACACCAACTTCCACTCCAGTTCATTTGAAGCAAGGCACTGCCAGTTCTGGTGTCAGCAACCCTCATGTTATTGTGGATAAGCCTGGGCAGGTCATTGGAGCCTCCACTCCAAGTACAGGAAGTCCTACAAGCAAGCTCCCAGTGGCCTCTCAGGCTTCCCAAGGAACAGGGTCCCCTATTCCTAAGATTCATGGAAGTAGTTTTTTGACATCTACTGTGAAGCAGGAGGAGTCTTTATTCGCATCTATGCCACCTCTTTGCCCAATTGGTAGTCACCCTAAAGTGCAGAGCCCCAAAGCTGTGACTGGAGGACTTGGGGCTTTCACAAAGGTGATCATCAAACAGGAACCTGGAGAAGCTCCTCATGTGTCCACAACAGGAGCTGCGAGCCAGTCAGCATTCCCTCAGTATGTGACCGTGAAAGGGGGTCACATGATAGCTGTGTCCCCTCAAAAGCAGGTCATAAGTGCTGGAGAAGGGACCACTCAGTCACCAAAGATTGCACCCTCCAAGGTTGTTGGTGTGCCTGTTGGCTCTGCCTTACCTTCCACAGTGAAGCAGGCTGTAGCAATCAGTAGTGGCCAAATCCTTGTCGCCAAGGCCAGCTCTTCTGTCACCAAAGCTGTTGGTCCAAAACAAGTTGTGACCCAAGGAGTTGCCAAAGCAATCGTGAGTGGAGGTGGAGGGACCATTGTCGCTCAGCCAGTGCAGACCTTAACCAAGACTCAGGTCACAGCTGCTGGGCCGCAGAAGAGTGGCTCCCAGGGCTCAGTAATGGCCACCTTGCAACTACCAGCCACTAATTTGGCCAACCTGGCGAACTTGCCTCCGGGCACTAAACTGTACCTTACCACGAACAGCAAGAACCCCTCAGGAAAAGGGAAGCTGCTGCTGATTCCTCAAGGAGCCATCCTGCGAGCTACCAACAATGCCAACCTGCAGTCTGGCTCGGCTGCTGCTGGTGGCAGTGGCAGCAGTGGTGCAGGGGGAGGCAGTGGAGGTGGCGGTGGCAGCGGAGCAGGAGGAACCCCAAGCACCTCTGGCCCAGGAGGGGGCCCCCAGCACCTGACTTACACATCCTACATCCTCAAGCAAACCCCCCAGGGTACATTTTTAGTTGGCCAACCATCACCCCAAACACCTGGAAAACAACTGACTACTGCATCGGTGGTTCAAGGAACACTGGGAGTCAGTTCATCATCTGCACAGGGACAACAGACACTGAAAGTCATCTCTGGACAGAAAACCACTTTGTTTACACAGGCAGCCACTGCTGGGCAGGCATCGCTGCTGAAGTTACCAGACAACACCCTGAAGTCAGTGCCAGCAGCTCCACAGCTCGCCAAGCCTGGGACCACGATGCTTCGAGTGGCAGGGGGGGTGATCACAGCTGCTCCCTCCCCTGCAGTGGCCTTCTCAGCAAATGGTGCTGTACACCAGTCTGAAGGATCAACCCCTGTGTCATCCTCTGTTGGTTCTATAATCAAAACTCCTGGTCAGCCACAAGTGTGTGTAAGCCAGGCCACCATGGCAACCTGCAAGGGCCCCGCTGCTGTTGCCGGCACTGCCGCGTCCCTGGTATCTGCACCAAGCTCCATCTCTGGGAAAGCCACAGTGTCAGGGTTGCTAAAAGTTCATTCCGCTCAGTCCAGTCCCCAGCAGGCTGTCCTGACAATTCCCAGTCAACTCAAGCCACTAAGCATCAATACCTCTGGTGGCGTGCAGACTGTCTTGATGCCTGTGAATAAAGTGGTTCAGTCGTTTTCTACCAGCAAATTACCTACTACTGTCCTGCCCATAAGTGTTCCAAATCAAGCTGCCCCCAGCTCTGCTCCAGTAGCAATTGCCAAAGTGAAGACTGAACCAGAAACTCCTGGGCCAAACTGCATCTCACAGGAGAACCAGGTAGCAGTGAAAACAGAAGAGAGCTCTGAGCTAAGCAACTACGTCATTAAGGTAGACCATTTGGAGACCATCCAGCAGCTCCTGACAGCAGTAGTGAAGAAGATCCCATTAATTACTGCAAAAGGTGATGATGCCAGCTGTTTTTCTGCGAAGTCCTTGGAGCAGTATTACGGCTGGAACATTGGGAAGAGGAGAGCTGCTGAGTGGCAAAGAGCAATGACAGTACGAAAAGTGTTACAAGAAATCCTGGAGAAGAATCCAAGATTCCACCACTTGACTCCCCTCAAGACCAAGCACATTGCTCACTGGTGCCGCTGCCACGGTTACACCCCACCAGACCCCGAGAGCCTGCGACATGATGGAGACTCCATTGAGGATGTGCTGACCCAGATTGACAGTGAACCAGGATTCCCAGAGACCACTGAAGCTGAGAGACACAGTACATTTTATTCTTTACCATCTTCGTTGGAAAGAACACCCACTAAAGTGACAACAGCACAGAAGGTCACCTTCAGTTCACATGGGAATTCTGCCTTCCAGCCTATCGCATCAAGCTGCAAAATTGTGCCACAAAGTCAGGTGCCTAATCCCGAGTCACCTGGCAAGTCCTTTCAGCCAATCACCATGAGCTGTAAGATTGTCTCAGGTTCTCCAATATCAACTCCAAGCCCATCACCATTACCTCGCACACCAACTTCCACTCCAGTTCATTTGAAGCAAGGCACTGCCAGTTCTGGTGTCAGCAACCCTCATGTTATTGTGGATAAGCCTGGGCAGGTCATTGGAGCCTCCACTCCAAGTACAGGAAGTCCTACAAGCAAGCTCCCAGTGGCCTCTCAGGCTTCCCAAGGAACAGGGTCCCCTATTCCTAAGATTCATGGAAGTAGTTTTTTGACATCTACTGTGAAGCAGGAGGAGTCTTTATTCGCATCTATGCCACCTCTTTGCCCAATTGGTAGTCACCCTAAAGTGCAGAGCCCCAAAGCTGTGACTGGAGGACTTGGGGCTTTCACAAAGGTGATCATCAAACAGGAACCTGGAGAAGCTCCTCATGTGTCCACAACAGGAGCTGCGAGCCAGTCAGCATTCCCTCAGTATGTGACCGTGAAAGGGGGTCACATGATAGCTGTGTCCCCTCAAAAGCAGGTCATAAGTGCTGGAGAAGGGACCACTCAGTCACCAAAGATTGCACCCTCCAAGGTTGTTGGTGTGCCTGTTGGCTCTGCCTTACCTTCCACAGTGAAGCAGGCTGTAGCAATCAGTAGTGGCCAAATCCTTGTCGCCAAGGCCAGCTCTTCTGTCACCAAAGCTGTTGGTCCAAAACAAGTTGTGACCCAAGGAGTTGCCAAAGCAATCGTGAGTGGAGGTGGAGGGACCATTGTCGCTCAGCCAGTGCAGACCTTAACCAAGACTCAGGTCACAGCTGCTGGGCCGCAGAAGAGTGGCTCCCAGGGCTCAGTAATGGCCACCTTGCAACTACCAGCCACTAATTTGGCCAACCTGGCGAACTTGCCTCCGGGCACTAAACTGTACCTTACCACGAACAGCAAGAACCCCTCAGGAAAAGGGAAGCTGCTGCTGATTCCTCAAGGAGCCATCCTGCGAGCTACCAACAATGCCAACCTGCAGTCTGGCTCGGCTGCTGCTGGTGGCAGTGGCAGCAGTGGTGCAGGGGGAGGCAGTGGAGGTGGCGGTGGCAGCGGAGCAGGAGGAACCCCAAGCACCTCTGGCCCAGGAGGGGGCCCCCAGCACCTGACTTACACATCCTACATCCTCAAGCAAACCCCCCAGGGTACATTTTTAGTTGGCCAACCATCACCCCAAACACCTGGAAAACAACTGACTACTGCATCGGTGGTTCAAGGAACACTGGGAGTCAGTTCATCATCTGCACAGGGACAACAGACACTGAAAGTCATCTCTGGACAGAAAACCACTTTGTTTACACAGGCAGCCACTGCTGGGCAGGCATCGCTGCTGAAGTTACCAGACAACACCCTGAAGTCAGTGCCAGCAGCTCCACAGCTCGCCAAGCCTGGGACCACGATGCTTCGAGTGGCAGGGGGGGTGATCACAGCTGCTCCCTCCCCTGCAGTGGCCTTCTCAGCAAATGGTGCTGTACACCAGTCTGAAGGATCAACCCCTGTGTCATCCTCTGTTGGTTCTATAATCAAAACTCCTGGTCAGCCACAAGTGTGTGTAAGCCAGGCCACCATGGCAACCTGCAAGGGCCCCGCTGCTGTTGCCGGCACTGCCGCGTCCCTGGTATCTGCACCAAGCTCCATCTCTGGGAAAGCCACAGTGTCAGGGTTGCTAAAAGTTCATTCCGCTCAGTCCAGTCCCCAGCAGGCTGTCCTGACAATTCCCAGTCAACTCAAGCCACTAAGCATCAATACCTCTGGTGGCGTGCAGACTGTCTTGATGCCTGTGAATAAAGTGGTTCAGTCGTTTTCTACCAGCAAATTACCTACTACTGTCCTGCCCATAAGTGTTCCAAATCAAGCTGCCCCCAGCTCTGCTCCAGTAGCAATTGCCAAAGTGAAGACTGAACCAGAAACTCCTGGGCCAAACTGCATCTCACAGGAGAACCAGGTAGCAGTGAAAACAGAAGAGAGCTCTGAGCTAAGCAACTACGTCATTAAGGTAGACCATTTGGAGACCATCCAGCAGCTCCTGACAGCAGTAGTGAAGAAGATCCCATTAATTACTGCAAAAGGTGATGATGCCAGCTGTTTTTCTGCGAAGTCCTTGGAGCAGTATTACGGCTGGAACATTGGGAAGAGGAGAGCTGCTGAGTGGCAAAGAGCAATGACAGTACGAAAAGTGTTACAAGAAATCCTGGAGAAGAATCCAAGATTCCACCACTTGACTCCCCTCAAGACCAAGCACATTGCTCACTGGTGCCGCTGCCACGGTTACACCCCACCAGACCCCGAGAGCCTGCGACATGATGGAGACTCCATTGAGGATGTGCTGACCCAGATTGACAGTGAACCA
Peptide sequence:
MSCKIVSGSPISTPSPSPLPRTPTSTPVHLKQGTASSGVSNPHVIVDKPGQVIGASTPSTGSPTSKLPVASQASQGTGSPIPKIHGSSFLTSTVKQEESLFASMPPLCPIGSHPKVQSPKAVTGGLGAFTKVIIKQEPGEAPHVSTTGAASQSAFPQYVTVKGGHMIAVSPQKQVISAGEGTTQSPKIAPSKVVGVPVGSALPSTVKQAVAISSGQILVAKASSSVTKAVGPKQVVTQGVAKAIVSGGGGTIVAQPVQTLTKTQVTAAGPQKSGSQGSVMATLQLPATNLANLANLPPGTKLYLTTNSKNPSGKGKLLLIPQGAILRATNNANLQSGSAAAGGSGSSGAGGGSGGGGGSGAGGTPSTSGPGGGPQHLTYTSYILKQTPQGTFLVGQPSPQTPGKQLTTASVVQGTLGVSSSSAQGQQTLKVISGQKTTLFTQAATAGQASLLKLPDNTLKSVPAAPQLAKPGTTMLRVAGGVITAAPSPAVAFSANGAVHQSEGSTPVSSSVGSIIKTPGQPQVCVSQATMATCKGPAAVAGTAASLVSAPSSISGKATVSGLLKVHSAQSSPQQAVLTIPSQLKPLSINTSGGVQTVLMPVNKVVQSFSTSKLPTTVLPISVPNQAAPSSAPVAIAKVKTEPETPGPNCISQENQVAVKTEESSELSNYVIKVDHLETIQQLLTAVVKKIPLITAKGDDASCFSAKSLEQYYGWNIGKRRAAEWQRAMTVRKVLQEILEKNPRFHHLTPLKTKHIAHWCRCHGYTPPDPESLRHDGDSIEDVLTQIDSEPGFPETTEAERHSTFYSLPSSLERTPTKVTTAQKVTFSSHGNSAFQPIASSCKIVPQSQVPNPESPGKSFQPITMSCKIVSGSPISTPSPSPLPRTPTSTPVHLKQGTASSGVSNPHVIVDKPGQVIGASTPSTGSPTSKLPVASQASQGTGSPIPKIHGSSFLTSTVKQEESLFASMPPLCPIGSHPKVQSPKAVTGGLGAFTKVIIKQEPGEAPHVSTTGAASQSAFPQYVTVKGGHMIAVSPQKQVISAGEGTTQSPKIAPSKVVGVPVGSALPSTVKQAVAISSGQILVAKASSSVTKAVGPKQVVTQGVAKAIVSGGGGTIVAQPVQTLTKTQVTAAGPQKSGSQGSVMATLQLPATNLANLANLPPGTKLYLTTNSKNPSGKGKLLLIPQGAILRATNNANLQSGSAAAGGSGSSGAGGGSGGGGGSGAGGTPSTSGPGGGPQHLTYTSYILKQTPQGTFLVGQPSPQTPGKQLTTASVVQGTLGVSSSSAQGQQTLKVISGQKTTLFTQAATAGQASLLKLPDNTLKSVPAAPQLAKPGTTMLRVAGGVITAAPSPAVAFSANGAVHQSEGSTPVSSSVGSIIKTPGQPQVCVSQATMATCKGPAAVAGTAASLVSAPSSISGKATVSGLLKVHSAQSSPQQAVLTIPSQLKPLSINTSGGVQTVLMPVNKVVQSFSTSKLPTTVLPISVPNQAAPSSAPVAIAKVKTEPETPGPNCISQENQVAVKTEESSELSNYVIKVDHLETIQQLLTAVVKKIPLITAKGDDASCFSAKSLEQYYGWNIGKRRAAEWQRAMTVRKVLQEILEKNPRFHHLTPLKTKHIAHWCRCHGYTPPDPESLRHDGDSIEDVLTQIDSEP
IRESfinder result
IRESfinder score
0.557959234
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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