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mmu_circYeats2_1047
Basic information of circular RNA
PanCircBase ID:
mmu_circYeats2_1047
mm39_Chr. Position ID:
chr16|19971658|19998425|+
Gene name:
Yeats2
Transcript:
ENSMUST00000090052.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
2,3,4,5,6,7,8,9
Exon/intron offsets:
0,1228,3978,6228,9067,18282,21586,26592
Genomic length:
26767
Exon/intron sizes in nt:
98,93,24,61,16,16,21,10,00,000
Flanking exon/introns:
chr16:19959985-19971658|chr16:19998425-20005000
Splice length:
1047
Other database IDs:
CIRCpedia: MMU_CIRCpedia_12851, circAtlas: mmu-Yeats2_0024
circBase: hsa_circ_0068175, circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_44629
Human Ortholog IDs:
Mature spliced Sequence:
CTCGAGATGCAGCTGTGCAGAAAATTGAGACTATTATTAAGGAGCAGTTTGCTCTTGAGATGAAGAATAAGGAACATGAGATTGATGTCATTGACCAGCGACTGATTGAAGCCAGGAGGATGATGGATAAGCTCCGGGCCTGCATTGTAGCAAACTATTATGCCTCCGCTGGTCTCCTGAAGGTTTCTGAGGGATTAAAGACATTTGATCCGATGGCTTTTAATCACCCTGCTATCAAGAAATTTTTGGAATCACCTTCTAGGTCATCATCTCCTACCAATCAGAGATCAGAAACACCATCTGCCAATCACTCTGAAAGTGACTCTTTATCTCAGCACAATGACTTCCTGTCTGACAAAGACAATAACAGCAACGTGGATGTGGAGGAAAGACCCCCAAGCACCGGGGAACAGCGACCGAGCCGAAAGGCAGGAAGGGACACGTCTAGTATCAGTGGCTCCCACAAACGGGAACTACGGAATGCTGACCTCACAGGAGATGAGACTTCACGACTGTTTGTCAAGAAAACGATAGTAGTCGGCAACGTGTCCAAGTACATACCTCCAGATAAGCGGGAAGAAAATGACCAGTCAACCCATAAGTGGATGGTATATGTCCGAGGGTCGCGTAGAGAGCCCAGCATTAATCACTTTGTCAAGAAAGTTTGGTTTTTCCTTCATCCTAGCTATAAACCAAACGATCTTGTGGAAGTTAGAGAGCCCCCCTTTCATCTGACTAGAAGAGGCTGGGGTGAGTTTCCTGTCAGAGTGCAAGTTCACTTTAAGGACAGCCAGAACAAGCGGATAGATATCATACACAACCTGAAGCTGGATAGAACCTACACTGGCCTACAGACCCTGGGTGCAGAGACGGTGGTGGACGTCGAGCTTCATCGGCACTCGCTTGGTGAAGACTCCGTTTATCCTCAGTCGTCGGAATCAGACGTATGTGATGCCCCGCCTCCAACCCTGACGCTTCCAGCCGCCGTGAAAGCCTCAGCAGTGGCACAGTCCCCTGAGCCGGCAGCTGCTGCCCCTGTGGGGGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCGTGAAAGCCTCAGCAGT
60.3
CGCTGGTCAATGACATCAATCT
59.06
163
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCGTGAAAGCCTCAGCAGT
60.3
CGCTGGTCAATGACATCAATCTC
60
163
PCR template sequence:
TGTGATGCCCCGCCTCCAACCCTGACGCTTCCAGCCGCCGTGAAAGCCTCAGCAGTGGCACAGTCCCCTGAGCCGGCAGCTGCTGCCCCTGTGGGGGAAGCTCGAGATGCAGCTGTGCAGAAAATTGAGACTATTATTAAGGAGCAGTTTGCTCTTGAGATGAAGAATAAGGAACATGAGATTGATGTCATTGACCAGCG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-335-5p(1), mmu-miR-143-3p(1), mmu-miR-181b-5p(1), mmu-miR-22-3p(1), mmu-miR-127-5p(1), mmu-miR-212-3p(1), mmu-miR-192-5p(1), mmu-miR-215-5p(1), mmu-miR-669d-5p(1), mmu-miR-296-3p(1), mmu-miR-202-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CCTGTGGGGGAAGCTCGAGATGCAGC
siRNA sets
CTGCATCTCGAGCTTCCCC, ATCTCGAGCTTCCCCCACA, TGCATCTCGAGCTTCCCCC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCYEATS2_1047_ORF_1
1.0898
0.244581066
0.999995933
2034
ORF sequence:
ATGAAGAATAAGGAACATGAGATTGATGTCATTGACCAGCGACTGATTGAAGCCAGGAGGATGATGGATAAGCTCCGGGCCTGCATTGTAGCAAACTATTATGCCTCCGCTGGTCTCCTGAAGGTTTCTGAGGGATTAAAGACATTTGATCCGATGGCTTTTAATCACCCTGCTATCAAGAAATTTTTGGAATCACCTTCTAGGTCATCATCTCCTACCAATCAGAGATCAGAAACACCATCTGCCAATCACTCTGAAAGTGACTCTTTATCTCAGCACAATGACTTCCTGTCTGACAAAGACAATAACAGCAACGTGGATGTGGAGGAAAGACCCCCAAGCACCGGGGAACAGCGACCGAGCCGAAAGGCAGGAAGGGACACGTCTAGTATCAGTGGCTCCCACAAACGGGAACTACGGAATGCTGACCTCACAGGAGATGAGACTTCACGACTGTTTGTCAAGAAAACGATAGTAGTCGGCAACGTGTCCAAGTACATACCTCCAGATAAGCGGGAAGAAAATGACCAGTCAACCCATAAGTGGATGGTATATGTCCGAGGGTCGCGTAGAGAGCCCAGCATTAATCACTTTGTCAAGAAAGTTTGGTTTTTCCTTCATCCTAGCTATAAACCAAACGATCTTGTGGAAGTTAGAGAGCCCCCCTTTCATCTGACTAGAAGAGGCTGGGGTGAGTTTCCTGTCAGAGTGCAAGTTCACTTTAAGGACAGCCAGAACAAGCGGATAGATATCATACACAACCTGAAGCTGGATAGAACCTACACTGGCCTACAGACCCTGGGTGCAGAGACGGTGGTGGACGTCGAGCTTCATCGGCACTCGCTTGGTGAAGACTCCGTTTATCCTCAGTCGTCGGAATCAGACGTATGTGATGCCCCGCCTCCAACCCTGACGCTTCCAGCCGCCGTGAAAGCCTCAGCAGTGGCACAGTCCCCTGAGCCGGCAGCTGCTGCCCCTGTGGGGGAAGCTCGAGATGCAGCTGTGCAGAAAATTGAGACTATTATTAAGGAGCAGTTTGCTCTTGAGATGAAGAATAAGGAACATGAGATTGATGTCATTGACCAGCGACTGATTGAAGCCAGGAGGATGATGGATAAGCTCCGGGCCTGCATTGTAGCAAACTATTATGCCTCCGCTGGTCTCCTGAAGGTTTCTGAGGGATTAAAGACATTTGATCCGATGGCTTTTAATCACCCTGCTATCAAGAAATTTTTGGAATCACCTTCTAGGTCATCATCTCCTACCAATCAGAGATCAGAAACACCATCTGCCAATCACTCTGAAAGTGACTCTTTATCTCAGCACAATGACTTCCTGTCTGACAAAGACAATAACAGCAACGTGGATGTGGAGGAAAGACCCCCAAGCACCGGGGAACAGCGACCGAGCCGAAAGGCAGGAAGGGACACGTCTAGTATCAGTGGCTCCCACAAACGGGAACTACGGAATGCTGACCTCACAGGAGATGAGACTTCACGACTGTTTGTCAAGAAAACGATAGTAGTCGGCAACGTGTCCAAGTACATACCTCCAGATAAGCGGGAAGAAAATGACCAGTCAACCCATAAGTGGATGGTATATGTCCGAGGGTCGCGTAGAGAGCCCAGCATTAATCACTTTGTCAAGAAAGTTTGGTTTTTCCTTCATCCTAGCTATAAACCAAACGATCTTGTGGAAGTTAGAGAGCCCCCCTTTCATCTGACTAGAAGAGGCTGGGGTGAGTTTCCTGTCAGAGTGCAAGTTCACTTTAAGGACAGCCAGAACAAGCGGATAGATATCATACACAACCTGAAGCTGGATAGAACCTACACTGGCCTACAGACCCTGGGTGCAGAGACGGTGGTGGACGTCGAGCTTCATCGGCACTCGCTTGGTGAAGACTCCGTTTATCCTCAGTCGTCGGAATCAGACGTATGTGATGCCCCGCCTCCAACCCTGACGCTTCCAGCCGCCGTGAAAGCCTCAGCAGTGGCACAGTCCCCTGAGCCGGCAGCTGCTGCCCCTGTGGGGGAA
Peptide sequence:
MKNKEHEIDVIDQRLIEARRMMDKLRACIVANYYASAGLLKVSEGLKTFDPMAFNHPAIKKFLESPSRSSSPTNQRSETPSANHSESDSLSQHNDFLSDKDNNSNVDVEERPPSTGEQRPSRKAGRDTSSISGSHKRELRNADLTGDETSRLFVKKTIVVGNVSKYIPPDKREENDQSTHKWMVYVRGSRREPSINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPVRVQVHFKDSQNKRIDIIHNLKLDRTYTGLQTLGAETVVDVELHRHSLGEDSVYPQSSESDVCDAPPPTLTLPAAVKASAVAQSPEPAAAAPVGEARDAAVQKIETIIKEQFALEMKNKEHEIDVIDQRLIEARRMMDKLRACIVANYYASAGLLKVSEGLKTFDPMAFNHPAIKKFLESPSRSSSPTNQRSETPSANHSESDSLSQHNDFLSDKDNNSNVDVEERPPSTGEQRPSRKAGRDTSSISGSHKRELRNADLTGDETSRLFVKKTIVVGNVSKYIPPDKREENDQSTHKWMVYVRGSRREPSINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPVRVQVHFKDSQNKRIDIIHNLKLDRTYTGLQTLGAETVVDVELHRHSLGEDSVYPQSSESDVCDAPPPTLTLPAAVKASAVAQSPEPAAAAPVGE
IRESfinder result
IRESfinder score
0.469449209
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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