top of page

mmu_circWdyhv1_425

Basic information of circular RNA
PanCircBase ID:

mmu_circWdyhv1_425

mm39_Chr. Position ID:

chr15|58011729|58017100|+

Gene name:

Wdyhv1

Transcript:

ENSMUST00000067563.9

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

4

Exon/intron indexes:

2,3,4,5

Exon/intron offsets:

0,2272,4263,5246

Genomic length:

5371

Exon/intron sizes in nt:

100,51,149,125

Flanking exon/introns:

chr15:58004977-58011729|chr15:58017100-58021297

Splice length:

425

Other database IDs:

circAtlas: mmu-Wdyhv1_0004

circBase: hsa_circ_0135666, circAtlas: hsa-WDYHV1_0001, CIRCpedia: HSA_CIRCpedia_59990

Human Ortholog IDs:
Mature spliced Sequence:

TGAGGAAAACATTTGGAAGCTCTGTGAGTACATCAAGACACACAACCAGTATCTGTTGGAGGAGTGCTATGCAGTCTTCATATCAAATGAGAAGAAGATGGTACCTATTTGGAAACAGCAGGCAAGACCTGAGAATGGACCTGTGATCTGGGACTACCATGTGGTTCTGCTTCATGTGTCAAGGGAAGGACAAAGCTTCATTTATGATCTTGACACTATTTTGCCATTTCCCTGCCCTTTCGACATTTACATAGAAGATGCCCTTAAGTCTGATGATGACATTCATCTGCAGTTTAGGAGGAAATTTAGAGTGGTTCGTGCTGACTCCTACTTGAAGCACTTCGCTTCTGACCGGTCTCACATGAAAGACTCCAGTGGGAACTGGAGAGAGCCTCCCCCAGAGTACCCCTGCATTGAAACTGGAG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

GCTTCTGACCGGTCTCACAT

59.75

GACTGCATAGCACTCCTCCA

59.17

158

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

GCTTCTGACCGGTCTCACAT

59.75

TGCATAGCACTCCTCCAACA

59.02

155

PCR template sequence:

TCCTACTTGAAGCACTTCGCTTCTGACCGGTCTCACATGAAAGACTCCAGTGGGAACTGGAGAGAGCCTCCCCCAGAGTACCCCTGCATTGAAACTGGAGTGAGGAAAACATTTGGAAGCTCTGTGAGTACATCAAGACACACAACCAGTATCTGTTGGAGGAGTGCTATGCAGTCTTCATATCAAATGAGAAGAAGATG

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

6

Interacting miRNAs (#binding sites)

mmu-miR-326-3p(1), mmu-miR-431-5p(1), mmu-miR-26b-5p(1), mmu-miR-466a-5p(1), mmu-miR-466p-5p(1), mmu-miR-540-3p(1)

siRNAs for circular RNA silencing
Junction sequence

ATTGAAACTGGAGTGAGGAAAACATT

siRNA sets

TTTTCCTCACTCCAGTTTC, TTTCCTCACTCCAGTTTCA, AATGTTTTCCTCACTCCAG

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCWDYHV1_425_ORF_1

0.5604

0.011181652

0.319816528

474

ORF sequence:

ATGGTACCTATTTGGAAACAGCAGGCAAGACCTGAGAATGGACCTGTGATCTGGGACTACCATGTGGTTCTGCTTCATGTGTCAAGGGAAGGACAAAGCTTCATTTATGATCTTGACACTATTTTGCCATTTCCCTGCCCTTTCGACATTTACATAGAAGATGCCCTTAAGTCTGATGATGACATTCATCTGCAGTTTAGGAGGAAATTTAGAGTGGTTCGTGCTGACTCCTACTTGAAGCACTTCGCTTCTGACCGGTCTCACATGAAAGACTCCAGTGGGAACTGGAGAGAGCCTCCCCCAGAGTACCCCTGCATTGAAACTGGAGTGAGGAAAACATTTGGAAGCTCTGTGAGTACATCAAGACACACAACCAGTATCTGTTGGAGGAGTGCTATGCAGTCTTCATATCAAATGAGAAGAAGATGGTACCTATTTGGAAACAGCAGGCAAGACCTGAGAATGGACCTGTGA

Peptide sequence:

MVPIWKQQARPENGPVIWDYHVVLLHVSREGQSFIYDLDTILPFPCPFDIYIEDALKSDDDIHLQFRRKFRVVRADSYLKHFASDRSHMKDSSGNWREPPPEYPCIETGVRKTFGSSVSTSRHTTSICWRSAMQSSYQMRRRWYLFGNSRQDLRMDL

IRESfinder result

IRESfinder score

0.737402163

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

logo.png

Institute of Life sciences, Bhubaneswar, India

bottom of page