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mmu_circWdr7_2583
Basic information of circular RNA
PanCircBase ID:
mmu_circWdr7_2583
mm39_Chr. Position ID:
chr18|63888106|64069019|+
Gene name:
Wdr7
Transcript:
ENSMUST00000072726.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
14
Exon/intron indexes:
13,14,15,16,17,18,19,20,21,22,23,24,25,26
Exon/intron offsets:
0,5535,22492,24833,36760,39189,41122,70089,110249,148994,169776,171543,172230,180813
Genomic length:
180913
Exon/intron sizes in nt:
19,62,15,77,08,99,61,10,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr18:63873318-63888106|chr18:64069019-64112390
Splice length:
2583
Other database IDs:
circAtlas: mmu-Wdr7_0004
CIRCpedia: HSA_CIRCpedia_88492
Human Ortholog IDs:
Mature spliced Sequence:
GCAAGAGTTCAACACTGCATCTGTTCCGTAGCCAGTGACCACTCTGTAGGCCTCCTAAGTCTGCGAGAGAAAAAATGCATCATGTTGGCGTCTCGCCACCTCTTTCCTATTCAGGTGATCAAGTGGAGGCCTTCCGACGACTACCTGGTGGTGGGATGCACAGACGGCTCTGTGTATGTCTGGCAGATGGACACTGGTGCGCTGGATCGTTGTGCAATGGGAATCACAGCAGTGGAGATACTGAACGCTTGTGACGAAGCCGTTCCTGCCGCTGTAGACTCTCTTAGTCATCCAGCAGTCAACCTGAAACAAGCCATGACAAGACGGAGTCTCGCCGCCCTTAAAAATATGGCCCACCATAAGCTGCAAACCCTTGCAACGAACCTTTTGGCTTCTGAGGCCTCTGACAAGGGTAATTTACCTAAATATTCCCATAACTCCCTGATGGTTCAAGCAATAAAGACAAACCTAACAGACCCGGATATCCATGTGCTTTTCTTTGATGTGGAAGCTTTGATTATTCAACTCCTGACTGAAGAAGCCTCTAGGCCGAATACTGCACTTATTTCCCCAGAGAATCTGCAGAAAGCATCTGGCAGTTCAGACAAAGGGGGCTCTTTCCTAACTGGGAAGCGAGCAGCGGTTCTTTTCCAGCAAGTGAAAGAAACTATCAAAGAGAACATAAAGGAACACCTTCTGGATGAGGAGGAGGACGAGGAGGAGGCGAGGAGGCAGAGCAGGGAGGATAGTGACCCTGAGTACCGGGCCAGCAAGTCCAAGCCACTGACCCTACTAGAATACAACCTTACTATGGATACCGCAAAATTATTCATGTCCTGTCTCCACGCCTGGGGCTTGAATGAAGTTCTGGATGAAGTTTGTCTCGATCGCCTCGGAATGCTGAAACCGCACTGCACGGTGTCCTTTGGTCTCCTATCGAGAGGAGGTCATATGTCGCTGATGCTTCCCGGTTATAATCAGGCTGCTGGAAAACTGCTGCATGCGAAAGCAGAAGTAGGAAGGAAGCTGCCAGCAGCGGAGGGCGTAGGCAAGGGAACCTACACAGTGTCTCGAGCGGTCACCACTCAGCATCTGTTGTCCATCATATCCCTGGCGAATACTTTAATGAGTATGACCAATGCAACTTTCATTGGCGATCACATGAAGAAGGGCCCCACCAGGCCGCCTAGACCTGGCACCCCAGACCTCTCTAAGGCGAGGGATTCCCCTCCACCCTCCAGTAACATTGTGCAAGGACAGATTAAACAAGCCGCTGCGCCTGTCGTTTCTGCTCGGTCTGACGCTGATCACTCTGGCTCTGACTCTGCCTCTCCTGCTTTACCTACCTGTTTCTTAGTAAATGAAGGCTGGAGCCAGTTAGCCGCCATGCACTGTGTTATGTTGCCTGACCTGCTGGGGCTGGAGAGATTCAGGCCTCCTCTCCTGGAGATGCTAGCTCGAAGATGGCAGGACCGATGCTTGGAGGTGAGAGAGGCTGCACAGGCCCTGCTTCTAGCTGAGCTGAGAAGGATTGAGCAGGCAGGACGGAAGGAGACGATCGACACCTGGGCTCCTTACTTACCTCAGTATATGGACCATGTCATATCACCTGGCGTCACGGCGGAAGCCATGCAGACTATGGCAGCTGCTCCAGATGCCTCGGGCCCAGAAGCCAAAGTCCAGGAAGAAGAGCATGACCTGGTGGATGATGACATCACTGCAGGTTGCTTGTCAAGTGTCCCACAGATGAAAAAAATCTCCACGTCTTACGAAGAAAGAAGGAAGCAGGCCACGGCTATTGTTCTCCTGGGAGTGATAGGGGCAGAGTTTGGAGCTGAAATTGAACCGCCGAAGCTGCTGACCAGGCCTCGAAGCTCCAGTCAAATCCCTGAAGGCTTTGGCTTGACCAGCGGAGGCTCCAACTACTCCCTGGCCAGACACACGTGCAAGGCACTGACATATCTTCTGCTACAGCCACCAAGTCCCAAGCTCCCTCCTCATAGCACCATCCGGAGAACTGCCACTGACCTGATTGGGCGAGGGTTCACTGTATGGGAGCCCTACATGGATGTGTCCGCTGTCCTGATGGGGCTGCTGGAGCTCTGTGCAGACGCTGAGAAACAACTTGCCAACATCACAATGGGGCTGCCTCTGAGCCCTGCAGCTGACTCTGCCCGCTCCGCAAGGCACGCCCTGTCTCTCATCGCCACAGCCAGACCACCCGCCTTCATCACCACCATAGCTAAGGAGGTCCACAGACACACGGCCCTTGCAGCGAACACCCAGTCCCAGCAGAGTATACACACCACCACCCTGGCGAGGGCTAAAGGCGAAATCCTGAGAGTCATTGAAATTCTCATTGAAAAGATGCCCACGGATGTGGTGGATCTTCTTGTGGAGGTGATGGATATCATCATGTACTGCCTGGAAGGATCTTTAGTGAAAAAGAAGGGTCTTCAGGAGTGTTTTCCAGCTATCTGCAGGTTCTACATGGTCAGCTATTATGAGCGCAGTCACAGAATCGCAGTTGGAGCACGCCATGGCTCAGTAGCCCTGTATGACATCCGGACTGGAAAATGTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGAGCGCAGTCACAGAATCG
60.73
TCGCAGACTTAGGAGGCCTA
59.74
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACAGAATCGCAGTTGGAGCA
59.96
GAGACGCCAACATGATGCAT
58.98
162
PCR template sequence:
GTTCTACATGGTCAGCTATTATGAGCGCAGTCACAGAATCGCAGTTGGAGCACGCCATGGCTCAGTAGCCCTGTATGACATCCGGACTGGAAAATGTCAGGCAAGAGTTCAACACTGCATCTGTTCCGTAGCCAGTGACCACTCTGTAGGCCTCCTAAGTCTGCGAGAGAAAAAATGCATCATGTTGGCGTCTCGCCACC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
22
Interacting miRNAs (#binding sites)
mmu-miR-666-5p(2), mmu-miR-137-3p(1), mmu-miR-134-5p(1), mmu-miR-199a-5p(1), mmu-miR-103-3p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-709(1), mmu-miR-324-5p(1), mmu-miR-339-5p(1), mmu-miR-214-3p(1), mmu-miR-149-5p(1), mmu-miR-434-3p(1), mmu-miR-363-3p(1), mmu-miR-382-5p(1), mmu-miR-107-3p(1), mmu-miR-342-5p(1), mmu-miR-680(1), mmu-miR-410-3p(1), mmu-miR-207(1), mmu-miR-5101(1), mmu-miR-335-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGGAAAATGTCAGGCAAGAGTTCAAC
siRNA sets
CTCTTGCCTGACATTTTCC, GTTGAACTCTTGCCTGACA, TTGAACTCTTGCCTGACAT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCWDR7_2583_ORF_1
1.0835
0.244291436
1
5085
ORF sequence:
ATGTTGGCGTCTCGCCACCTCTTTCCTATTCAGGTGATCAAGTGGAGGCCTTCCGACGACTACCTGGTGGTGGGATGCACAGACGGCTCTGTGTATGTCTGGCAGATGGACACTGGTGCGCTGGATCGTTGTGCAATGGGAATCACAGCAGTGGAGATACTGAACGCTTGTGACGAAGCCGTTCCTGCCGCTGTAGACTCTCTTAGTCATCCAGCAGTCAACCTGAAACAAGCCATGACAAGACGGAGTCTCGCCGCCCTTAAAAATATGGCCCACCATAAGCTGCAAACCCTTGCAACGAACCTTTTGGCTTCTGAGGCCTCTGACAAGGGTAATTTACCTAAATATTCCCATAACTCCCTGATGGTTCAAGCAATAAAGACAAACCTAACAGACCCGGATATCCATGTGCTTTTCTTTGATGTGGAAGCTTTGATTATTCAACTCCTGACTGAAGAAGCCTCTAGGCCGAATACTGCACTTATTTCCCCAGAGAATCTGCAGAAAGCATCTGGCAGTTCAGACAAAGGGGGCTCTTTCCTAACTGGGAAGCGAGCAGCGGTTCTTTTCCAGCAAGTGAAAGAAACTATCAAAGAGAACATAAAGGAACACCTTCTGGATGAGGAGGAGGACGAGGAGGAGGCGAGGAGGCAGAGCAGGGAGGATAGTGACCCTGAGTACCGGGCCAGCAAGTCCAAGCCACTGACCCTACTAGAATACAACCTTACTATGGATACCGCAAAATTATTCATGTCCTGTCTCCACGCCTGGGGCTTGAATGAAGTTCTGGATGAAGTTTGTCTCGATCGCCTCGGAATGCTGAAACCGCACTGCACGGTGTCCTTTGGTCTCCTATCGAGAGGAGGTCATATGTCGCTGATGCTTCCCGGTTATAATCAGGCTGCTGGAAAACTGCTGCATGCGAAAGCAGAAGTAGGAAGGAAGCTGCCAGCAGCGGAGGGCGTAGGCAAGGGAACCTACACAGTGTCTCGAGCGGTCACCACTCAGCATCTGTTGTCCATCATATCCCTGGCGAATACTTTAATGAGTATGACCAATGCAACTTTCATTGGCGATCACATGAAGAAGGGCCCCACCAGGCCGCCTAGACCTGGCACCCCAGACCTCTCTAAGGCGAGGGATTCCCCTCCACCCTCCAGTAACATTGTGCAAGGACAGATTAAACAAGCCGCTGCGCCTGTCGTTTCTGCTCGGTCTGACGCTGATCACTCTGGCTCTGACTCTGCCTCTCCTGCTTTACCTACCTGTTTCTTAGTAAATGAAGGCTGGAGCCAGTTAGCCGCCATGCACTGTGTTATGTTGCCTGACCTGCTGGGGCTGGAGAGATTCAGGCCTCCTCTCCTGGAGATGCTAGCTCGAAGATGGCAGGACCGATGCTTGGAGGTGAGAGAGGCTGCACAGGCCCTGCTTCTAGCTGAGCTGAGAAGGATTGAGCAGGCAGGACGGAAGGAGACGATCGACACCTGGGCTCCTTACTTACCTCAGTATATGGACCATGTCATATCACCTGGCGTCACGGCGGAAGCCATGCAGACTATGGCAGCTGCTCCAGATGCCTCGGGCCCAGAAGCCAAAGTCCAGGAAGAAGAGCATGACCTGGTGGATGATGACATCACTGCAGGTTGCTTGTCAAGTGTCCCACAGATGAAAAAAATCTCCACGTCTTACGAAGAAAGAAGGAAGCAGGCCACGGCTATTGTTCTCCTGGGAGTGATAGGGGCAGAGTTTGGAGCTGAAATTGAACCGCCGAAGCTGCTGACCAGGCCTCGAAGCTCCAGTCAAATCCCTGAAGGCTTTGGCTTGACCAGCGGAGGCTCCAACTACTCCCTGGCCAGACACACGTGCAAGGCACTGACATATCTTCTGCTACAGCCACCAAGTCCCAAGCTCCCTCCTCATAGCACCATCCGGAGAACTGCCACTGACCTGATTGGGCGAGGGTTCACTGTATGGGAGCCCTACATGGATGTGTCCGCTGTCCTGATGGGGCTGCTGGAGCTCTGTGCAGACGCTGAGAAACAACTTGCCAACATCACAATGGGGCTGCCTCTGAGCCCTGCAGCTGACTCTGCCCGCTCCGCAAGGCACGCCCTGTCTCTCATCGCCACAGCCAGACCACCCGCCTTCATCACCACCATAGCTAAGGAGGTCCACAGACACACGGCCCTTGCAGCGAACACCCAGTCCCAGCAGAGTATACACACCACCACCCTGGCGAGGGCTAAAGGCGAAATCCTGAGAGTCATTGAAATTCTCATTGAAAAGATGCCCACGGATGTGGTGGATCTTCTTGTGGAGGTGATGGATATCATCATGTACTGCCTGGAAGGATCTTTAGTGAAAAAGAAGGGTCTTCAGGAGTGTTTTCCAGCTATCTGCAGGTTCTACATGGTCAGCTATTATGAGCGCAGTCACAGAATCGCAGTTGGAGCACGCCATGGCTCAGTAGCCCTGTATGACATCCGGACTGGAAAATGTCAGGCAAGAGTTCAACACTGCATCTGTTCCGTAGCCAGTGACCACTCTGTAGGCCTCCTAAGTCTGCGAGAGAAAAAATGCATCATGTTGGCGTCTCGCCACCTCTTTCCTATTCAGGTGATCAAGTGGAGGCCTTCCGACGACTACCTGGTGGTGGGATGCACAGACGGCTCTGTGTATGTCTGGCAGATGGACACTGGTGCGCTGGATCGTTGTGCAATGGGAATCACAGCAGTGGAGATACTGAACGCTTGTGACGAAGCCGTTCCTGCCGCTGTAGACTCTCTTAGTCATCCAGCAGTCAACCTGAAACAAGCCATGACAAGACGGAGTCTCGCCGCCCTTAAAAATATGGCCCACCATAAGCTGCAAACCCTTGCAACGAACCTTTTGGCTTCTGAGGCCTCTGACAAGGGTAATTTACCTAAATATTCCCATAACTCCCTGATGGTTCAAGCAATAAAGACAAACCTAACAGACCCGGATATCCATGTGCTTTTCTTTGATGTGGAAGCTTTGATTATTCAACTCCTGACTGAAGAAGCCTCTAGGCCGAATACTGCACTTATTTCCCCAGAGAATCTGCAGAAAGCATCTGGCAGTTCAGACAAAGGGGGCTCTTTCCTAACTGGGAAGCGAGCAGCGGTTCTTTTCCAGCAAGTGAAAGAAACTATCAAAGAGAACATAAAGGAACACCTTCTGGATGAGGAGGAGGACGAGGAGGAGGCGAGGAGGCAGAGCAGGGAGGATAGTGACCCTGAGTACCGGGCCAGCAAGTCCAAGCCACTGACCCTACTAGAATACAACCTTACTATGGATACCGCAAAATTATTCATGTCCTGTCTCCACGCCTGGGGCTTGAATGAAGTTCTGGATGAAGTTTGTCTCGATCGCCTCGGAATGCTGAAACCGCACTGCACGGTGTCCTTTGGTCTCCTATCGAGAGGAGGTCATATGTCGCTGATGCTTCCCGGTTATAATCAGGCTGCTGGAAAACTGCTGCATGCGAAAGCAGAAGTAGGAAGGAAGCTGCCAGCAGCGGAGGGCGTAGGCAAGGGAACCTACACAGTGTCTCGAGCGGTCACCACTCAGCATCTGTTGTCCATCATATCCCTGGCGAATACTTTAATGAGTATGACCAATGCAACTTTCATTGGCGATCACATGAAGAAGGGCCCCACCAGGCCGCCTAGACCTGGCACCCCAGACCTCTCTAAGGCGAGGGATTCCCCTCCACCCTCCAGTAACATTGTGCAAGGACAGATTAAACAAGCCGCTGCGCCTGTCGTTTCTGCTCGGTCTGACGCTGATCACTCTGGCTCTGACTCTGCCTCTCCTGCTTTACCTACCTGTTTCTTAGTAAATGAAGGCTGGAGCCAGTTAGCCGCCATGCACTGTGTTATGTTGCCTGACCTGCTGGGGCTGGAGAGATTCAGGCCTCCTCTCCTGGAGATGCTAGCTCGAAGATGGCAGGACCGATGCTTGGAGGTGAGAGAGGCTGCACAGGCCCTGCTTCTAGCTGAGCTGAGAAGGATTGAGCAGGCAGGACGGAAGGAGACGATCGACACCTGGGCTCCTTACTTACCTCAGTATATGGACCATGTCATATCACCTGGCGTCACGGCGGAAGCCATGCAGACTATGGCAGCTGCTCCAGATGCCTCGGGCCCAGAAGCCAAAGTCCAGGAAGAAGAGCATGACCTGGTGGATGATGACATCACTGCAGGTTGCTTGTCAAGTGTCCCACAGATGAAAAAAATCTCCACGTCTTACGAAGAAAGAAGGAAGCAGGCCACGGCTATTGTTCTCCTGGGAGTGATAGGGGCAGAGTTTGGAGCTGAAATTGAACCGCCGAAGCTGCTGACCAGGCCTCGAAGCTCCAGTCAAATCCCTGAAGGCTTTGGCTTGACCAGCGGAGGCTCCAACTACTCCCTGGCCAGACACACGTGCAAGGCACTGACATATCTTCTGCTACAGCCACCAAGTCCCAAGCTCCCTCCTCATAGCACCATCCGGAGAACTGCCACTGACCTGATTGGGCGAGGGTTCACTGTATGGGAGCCCTACATGGATGTGTCCGCTGTCCTGATGGGGCTGCTGGAGCTCTGTGCAGACGCTGAGAAACAACTTGCCAACATCACAATGGGGCTGCCTCTGAGCCCTGCAGCTGACTCTGCCCGCTCCGCAAGGCACGCCCTGTCTCTCATCGCCACAGCCAGACCACCCGCCTTCATCACCACCATAGCTAAGGAGGTCCACAGACACACGGCCCTTGCAGCGAACACCCAGTCCCAGCAGAGTATACACACCACCACCCTGGCGAGGGCTAAAGGCGAAATCCTGAGAGTCATTGAAATTCTCATTGAAAAGATGCCCACGGATGTGGTGGATCTTCTTGTGGAGGTGATGGATATCATCATGTACTGCCTGGAAGGATCTTTAGTGAAAAAGAAGGGTCTTCAGGAGTGTTTTCCAGCTATCTGCAGGTTCTACATGGTCAGCTATTATGAGCGCAGTCACAGAATCGCAGTTGGAGCACGCCATGGCTCAGTAGCCCTGTATGACATCCGGACTGGAAAATGTCAG
Peptide sequence:
MLASRHLFPIQVIKWRPSDDYLVVGCTDGSVYVWQMDTGALDRCAMGITAVEILNACDEAVPAAVDSLSHPAVNLKQAMTRRSLAALKNMAHHKLQTLATNLLASEASDKGNLPKYSHNSLMVQAIKTNLTDPDIHVLFFDVEALIIQLLTEEASRPNTALISPENLQKASGSSDKGGSFLTGKRAAVLFQQVKETIKENIKEHLLDEEEDEEEARRQSREDSDPEYRASKSKPLTLLEYNLTMDTAKLFMSCLHAWGLNEVLDEVCLDRLGMLKPHCTVSFGLLSRGGHMSLMLPGYNQAAGKLLHAKAEVGRKLPAAEGVGKGTYTVSRAVTTQHLLSIISLANTLMSMTNATFIGDHMKKGPTRPPRPGTPDLSKARDSPPPSSNIVQGQIKQAAAPVVSARSDADHSGSDSASPALPTCFLVNEGWSQLAAMHCVMLPDLLGLERFRPPLLEMLARRWQDRCLEVREAAQALLLAELRRIEQAGRKETIDTWAPYLPQYMDHVISPGVTAEAMQTMAAAPDASGPEAKVQEEEHDLVDDDITAGCLSSVPQMKKISTSYEERRKQATAIVLLGVIGAEFGAEIEPPKLLTRPRSSSQIPEGFGLTSGGSNYSLARHTCKALTYLLLQPPSPKLPPHSTIRRTATDLIGRGFTVWEPYMDVSAVLMGLLELCADAEKQLANITMGLPLSPAADSARSARHALSLIATARPPAFITTIAKEVHRHTALAANTQSQQSIHTTTLARAKGEILRVIEILIEKMPTDVVDLLVEVMDIIMYCLEGSLVKKKGLQECFPAICRFYMVSYYERSHRIAVGARHGSVALYDIRTGKCQARVQHCICSVASDHSVGLLSLREKKCIMLASRHLFPIQVIKWRPSDDYLVVGCTDGSVYVWQMDTGALDRCAMGITAVEILNACDEAVPAAVDSLSHPAVNLKQAMTRRSLAALKNMAHHKLQTLATNLLASEASDKGNLPKYSHNSLMVQAIKTNLTDPDIHVLFFDVEALIIQLLTEEASRPNTALISPENLQKASGSSDKGGSFLTGKRAAVLFQQVKETIKENIKEHLLDEEEDEEEARRQSREDSDPEYRASKSKPLTLLEYNLTMDTAKLFMSCLHAWGLNEVLDEVCLDRLGMLKPHCTVSFGLLSRGGHMSLMLPGYNQAAGKLLHAKAEVGRKLPAAEGVGKGTYTVSRAVTTQHLLSIISLANTLMSMTNATFIGDHMKKGPTRPPRPGTPDLSKARDSPPPSSNIVQGQIKQAAAPVVSARSDADHSGSDSASPALPTCFLVNEGWSQLAAMHCVMLPDLLGLERFRPPLLEMLARRWQDRCLEVREAAQALLLAELRRIEQAGRKETIDTWAPYLPQYMDHVISPGVTAEAMQTMAAAPDASGPEAKVQEEEHDLVDDDITAGCLSSVPQMKKISTSYEERRKQATAIVLLGVIGAEFGAEIEPPKLLTRPRSSSQIPEGFGLTSGGSNYSLARHTCKALTYLLLQPPSPKLPPHSTIRRTATDLIGRGFTVWEPYMDVSAVLMGLLELCADAEKQLANITMGLPLSPAADSARSARHALSLIATARPPAFITTIAKEVHRHTALAANTQSQQSIHTTTLARAKGEILRVIEILIEKMPTDVVDLLVEVMDIIMYCLEGSLVKKKGLQECFPAICRFYMVSYYERSHRIAVGARHGSVALYDIRTGKCQ
IRESfinder result
IRESfinder score
0.381720561
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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