top of page
mmu_circWdr7_1945
Basic information of circular RNA
PanCircBase ID:
mmu_circWdr7_1945
mm39_Chr. Position ID:
chr18|63888106|63998577|+
Gene name:
Wdr7
Transcript:
ENSMUST00000072726.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
9
Exon/intron indexes:
13,14,15,16,17,18,19,20,21
Exon/intron offsets:
0,5535,22492,24833,36760,39189,41122,70089,110249
Genomic length:
110471
Exon/intron sizes in nt:
19,62,15,77,08,99,61,10,00,00,00,000
Flanking exon/introns:
chr18:63873318-63888106|chr18:63998577-64037100
Splice length:
1945
Other database IDs:
CIRCpedia: MMU_CIRCpedia_25659, circAtlas: mmu-Wdr7_0026
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
GCAAGAGTTCAACACTGCATCTGTTCCGTAGCCAGTGACCACTCTGTAGGCCTCCTAAGTCTGCGAGAGAAAAAATGCATCATGTTGGCGTCTCGCCACCTCTTTCCTATTCAGGTGATCAAGTGGAGGCCTTCCGACGACTACCTGGTGGTGGGATGCACAGACGGCTCTGTGTATGTCTGGCAGATGGACACTGGTGCGCTGGATCGTTGTGCAATGGGAATCACAGCAGTGGAGATACTGAACGCTTGTGACGAAGCCGTTCCTGCCGCTGTAGACTCTCTTAGTCATCCAGCAGTCAACCTGAAACAAGCCATGACAAGACGGAGTCTCGCCGCCCTTAAAAATATGGCCCACCATAAGCTGCAAACCCTTGCAACGAACCTTTTGGCTTCTGAGGCCTCTGACAAGGGTAATTTACCTAAATATTCCCATAACTCCCTGATGGTTCAAGCAATAAAGACAAACCTAACAGACCCGGATATCCATGTGCTTTTCTTTGATGTGGAAGCTTTGATTATTCAACTCCTGACTGAAGAAGCCTCTAGGCCGAATACTGCACTTATTTCCCCAGAGAATCTGCAGAAAGCATCTGGCAGTTCAGACAAAGGGGGCTCTTTCCTAACTGGGAAGCGAGCAGCGGTTCTTTTCCAGCAAGTGAAAGAAACTATCAAAGAGAACATAAAGGAACACCTTCTGGATGAGGAGGAGGACGAGGAGGAGGCGAGGAGGCAGAGCAGGGAGGATAGTGACCCTGAGTACCGGGCCAGCAAGTCCAAGCCACTGACCCTACTAGAATACAACCTTACTATGGATACCGCAAAATTATTCATGTCCTGTCTCCACGCCTGGGGCTTGAATGAAGTTCTGGATGAAGTTTGTCTCGATCGCCTCGGAATGCTGAAACCGCACTGCACGGTGTCCTTTGGTCTCCTATCGAGAGGAGGTCATATGTCGCTGATGCTTCCCGGTTATAATCAGGCTGCTGGAAAACTGCTGCATGCGAAAGCAGAAGTAGGAAGGAAGCTGCCAGCAGCGGAGGGCGTAGGCAAGGGAACCTACACAGTGTCTCGAGCGGTCACCACTCAGCATCTGTTGTCCATCATATCCCTGGCGAATACTTTAATGAGTATGACCAATGCAACTTTCATTGGCGATCACATGAAGAAGGGCCCCACCAGGCCGCCTAGACCTGGCACCCCAGACCTCTCTAAGGCGAGGGATTCCCCTCCACCCTCCAGTAACATTGTGCAAGGACAGATTAAACAAGCCGCTGCGCCTGTCGTTTCTGCTCGGTCTGACGCTGATCACTCTGGCTCTGACTCTGCCTCTCCTGCTTTACCTACCTGTTTCTTAGTAAATGAAGGCTGGAGCCAGTTAGCCGCCATGCACTGTGTTATGTTGCCTGACCTGCTGGGGCTGGAGAGATTCAGGCCTCCTCTCCTGGAGATGCTAGCTCGAAGATGGCAGGACCGATGCTTGGAGGTGAGAGAGGCTGCACAGGCCCTGCTTCTAGCTGAGCTGAGAAGGATTGAGCAGGCAGGACGGAAGGAGACGATCGACACCTGGGCTCCTTACTTACCTCAGTATATGGACCATGTCATATCACCTGGCGTCACGGCGGAAGCCATGCAGACTATGGCAGCTGCTCCAGATGCCTCGGGCCCAGAAGCCAAAGTCCAGGAAGAAGAGCATGACCTGGTGGATGATGACATCACTGCAGGTTGCTTGTCAAGTGTCCCACAGATGAAAAAAATCTCCACGTCTTACGAAGAAAGAAGGAAGCAGGCCACGGCTATTGTTCTCCTGGGAGTGATAGGGGCAGAGTTTGGAGCTGAAATTGAACCGCCGAAGCTGCTGACCAGGCCTCGAAGCTCCAGTCAAATCCCTGAAGGCTTTGGCTTGACCAGCGGAGGCTCCAACTACTCCCTGGCCAGACACACGT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCCTCGAAGCTCCAGTCAAA
60.32
TCGCAGACTTAGGAGGCCTA
59.74
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCCTCGAAGCTCCAGTCAAA
60.32
CTCTCGCAGACTTAGGAGGC
59.62
149
PCR template sequence:
CCGCCGAAGCTGCTGACCAGGCCTCGAAGCTCCAGTCAAATCCCTGAAGGCTTTGGCTTGACCAGCGGAGGCTCCAACTACTCCCTGGCCAGACACACGTGCAAGAGTTCAACACTGCATCTGTTCCGTAGCCAGTGACCACTCTGTAGGCCTCCTAAGTCTGCGAGAGAAAAAATGCATCATGTTGGCGTCTCGCCACC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
17
Interacting miRNAs (#binding sites)
mmu-miR-137-3p(1), mmu-miR-199a-5p(1), mmu-miR-103-3p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-709(1), mmu-miR-324-5p(1), mmu-miR-339-5p(1), mmu-miR-214-3p(1), mmu-miR-149-5p(1), mmu-miR-434-3p(1), mmu-miR-363-3p(1), mmu-miR-107-3p(1), mmu-miR-342-5p(1), mmu-miR-410-3p(1), mmu-miR-207(1), mmu-miR-5101(1)
siRNAs for circular RNA silencing
Junction sequence
GCCAGACACACGTGCAAGAGTTCAAC
siRNA sets
TTGAACTCTTGCACGTGTG, TCTTGCACGTGTGTCTGGC, GAACTCTTGCACGTGTGTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCWDR7_1945_ORF_1
1.0637
0.221738014
0.999987328
1902
ORF sequence:
ATGTTGGCGTCTCGCCACCTCTTTCCTATTCAGGTGATCAAGTGGAGGCCTTCCGACGACTACCTGGTGGTGGGATGCACAGACGGCTCTGTGTATGTCTGGCAGATGGACACTGGTGCGCTGGATCGTTGTGCAATGGGAATCACAGCAGTGGAGATACTGAACGCTTGTGACGAAGCCGTTCCTGCCGCTGTAGACTCTCTTAGTCATCCAGCAGTCAACCTGAAACAAGCCATGACAAGACGGAGTCTCGCCGCCCTTAAAAATATGGCCCACCATAAGCTGCAAACCCTTGCAACGAACCTTTTGGCTTCTGAGGCCTCTGACAAGGGTAATTTACCTAAATATTCCCATAACTCCCTGATGGTTCAAGCAATAAAGACAAACCTAACAGACCCGGATATCCATGTGCTTTTCTTTGATGTGGAAGCTTTGATTATTCAACTCCTGACTGAAGAAGCCTCTAGGCCGAATACTGCACTTATTTCCCCAGAGAATCTGCAGAAAGCATCTGGCAGTTCAGACAAAGGGGGCTCTTTCCTAACTGGGAAGCGAGCAGCGGTTCTTTTCCAGCAAGTGAAAGAAACTATCAAAGAGAACATAAAGGAACACCTTCTGGATGAGGAGGAGGACGAGGAGGAGGCGAGGAGGCAGAGCAGGGAGGATAGTGACCCTGAGTACCGGGCCAGCAAGTCCAAGCCACTGACCCTACTAGAATACAACCTTACTATGGATACCGCAAAATTATTCATGTCCTGTCTCCACGCCTGGGGCTTGAATGAAGTTCTGGATGAAGTTTGTCTCGATCGCCTCGGAATGCTGAAACCGCACTGCACGGTGTCCTTTGGTCTCCTATCGAGAGGAGGTCATATGTCGCTGATGCTTCCCGGTTATAATCAGGCTGCTGGAAAACTGCTGCATGCGAAAGCAGAAGTAGGAAGGAAGCTGCCAGCAGCGGAGGGCGTAGGCAAGGGAACCTACACAGTGTCTCGAGCGGTCACCACTCAGCATCTGTTGTCCATCATATCCCTGGCGAATACTTTAATGAGTATGACCAATGCAACTTTCATTGGCGATCACATGAAGAAGGGCCCCACCAGGCCGCCTAGACCTGGCACCCCAGACCTCTCTAAGGCGAGGGATTCCCCTCCACCCTCCAGTAACATTGTGCAAGGACAGATTAAACAAGCCGCTGCGCCTGTCGTTTCTGCTCGGTCTGACGCTGATCACTCTGGCTCTGACTCTGCCTCTCCTGCTTTACCTACCTGTTTCTTAGTAAATGAAGGCTGGAGCCAGTTAGCCGCCATGCACTGTGTTATGTTGCCTGACCTGCTGGGGCTGGAGAGATTCAGGCCTCCTCTCCTGGAGATGCTAGCTCGAAGATGGCAGGACCGATGCTTGGAGGTGAGAGAGGCTGCACAGGCCCTGCTTCTAGCTGAGCTGAGAAGGATTGAGCAGGCAGGACGGAAGGAGACGATCGACACCTGGGCTCCTTACTTACCTCAGTATATGGACCATGTCATATCACCTGGCGTCACGGCGGAAGCCATGCAGACTATGGCAGCTGCTCCAGATGCCTCGGGCCCAGAAGCCAAAGTCCAGGAAGAAGAGCATGACCTGGTGGATGATGACATCACTGCAGGTTGCTTGTCAAGTGTCCCACAGATGAAAAAAATCTCCACGTCTTACGAAGAAAGAAGGAAGCAGGCCACGGCTATTGTTCTCCTGGGAGTGATAGGGGCAGAGTTTGGAGCTGAAATTGAACCGCCGAAGCTGCTGACCAGGCCTCGAAGCTCCAGTCAAATCCCTGAAGGCTTTGGCTTGACCAGCGGAGGCTCCAACTACTCCCTGGCCAGACACACGTGCAAGAGTTCAACACTGCATCTGTTCCGTAGCCAGTGA
Peptide sequence:
MLASRHLFPIQVIKWRPSDDYLVVGCTDGSVYVWQMDTGALDRCAMGITAVEILNACDEAVPAAVDSLSHPAVNLKQAMTRRSLAALKNMAHHKLQTLATNLLASEASDKGNLPKYSHNSLMVQAIKTNLTDPDIHVLFFDVEALIIQLLTEEASRPNTALISPENLQKASGSSDKGGSFLTGKRAAVLFQQVKETIKENIKEHLLDEEEDEEEARRQSREDSDPEYRASKSKPLTLLEYNLTMDTAKLFMSCLHAWGLNEVLDEVCLDRLGMLKPHCTVSFGLLSRGGHMSLMLPGYNQAAGKLLHAKAEVGRKLPAAEGVGKGTYTVSRAVTTQHLLSIISLANTLMSMTNATFIGDHMKKGPTRPPRPGTPDLSKARDSPPPSSNIVQGQIKQAAAPVVSARSDADHSGSDSASPALPTCFLVNEGWSQLAAMHCVMLPDLLGLERFRPPLLEMLARRWQDRCLEVREAAQALLLAELRRIEQAGRKETIDTWAPYLPQYMDHVISPGVTAEAMQTMAAAPDASGPEAKVQEEEHDLVDDDITAGCLSSVPQMKKISTSYEERRKQATAIVLLGVIGAEFGAEIEPPKLLTRPRSSSQIPEGFGLTSGGSNYSLARHTCKSSTLHLFRSQ
IRESfinder result
IRESfinder score
0.388834069
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page