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mmu_circUvrag_633
Basic information of circular RNA
PanCircBase ID:
mmu_circUvrag_633
mm39_Chr. Position ID:
chr7|98628842|98665881|-
Gene name:
Uvrag
Transcript:
ENSMUST00000037968.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
12,11,10,9,8,7
Exon/intron offsets:
0,8548,9899,12288,24944,36933
Genomic length:
37039
Exon/intron sizes in nt:
166,61,88,85,127,106
Flanking exon/introns:
chr7:98589176-98628842|chr7:98665881-98715006
Splice length:
633
Other database IDs:
CIRCpedia: MMU_CIRCpedia_35964, circAtlas: mmu-Uvrag_0001
circAtlas: hsa-UVRAG_0001, CIRCpedia: HSA_CIRCpedia_5642
Human Ortholog IDs:
Mature spliced Sequence:
GCTTCATAGAGCCCAGTGTGCAATTAAACAGACTCAGGTAACTGTTCAGAGACTTGGAAAGGAAATTGAAGAAAAACTAAGACTCACATCGACAAGCAATGAGCTGAAAAAAGAAAGTGAATGTCTGCGATTGAAAATTTTGGTGCTTCGAAATGAACTGGAAAGACAGAAGAAAGCGCTGGGGCGGGAGGTGGCCTTCCTGCATAAGCAACAGATGGCTCTACAGGACAAAGGAAGTGCATTTTCCACTGAGCATGGCAAGCTCCAGCTGCAGAAGGACTCCCTGAGTGAGCTGAGGAAGGAGTGTACTGCCAAAAGGGAACTCTTTCTGAAGACTAATGCTCAGTTGACCATCCGCTGCAGGCAGCTACTCTCAGAGCTGTCCTACATTTACCCTATTGATTTGAATGAGAACAAGGATTATTTTGTATGTGGTGTCAAGTTGCCTAATTCCGAGGACTTCCAAGCAAAAGATGATGGAAGCATTGCCGTCGCCCTTGGTTACACTGCACATTTGGTCTCCATGATCTCCTTCTTCCTACAAGTACCCCTCAGGTATCCCATAATTCACAAGGGGTCCAGATCAACAATCAAAGATAACATCAACGACAAGCTGACAGAAAAGGAGCGAGA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CACAAGGGGTCCAGATCAACA
59.93
TGCTTGTCGATGTGAGTCTT
57.18
163
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CACAAGGGGTCCAGATCAACA
59.93
TTGCTTGTCGATGTGAGTCT
57.18
164
PCR template sequence:
TCTTCCTACAAGTACCCCTCAGGTATCCCATAATTCACAAGGGGTCCAGATCAACAATCAAAGATAACATCAACGACAAGCTGACAGAAAAGGAGCGAGAGCTTCATAGAGCCCAGTGTGCAATTAAACAGACTCAGGTAACTGTTCAGAGACTTGGAAAGGAAATTGAAGAAAAACTAAGACTCACATCGACAAGCAAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-32-5p(1), mmu-miR-29b-3p(1), mmu-miR-29c-3p(1), mmu-miR-181b-5p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AAAAGGAGCGAGAGCTTCATAGAGCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCUVRAG_633_ORF_1
1.1281
0.250768776
0.995625577
1050
ORF sequence:
ATGGCTCTACAGGACAAAGGAAGTGCATTTTCCACTGAGCATGGCAAGCTCCAGCTGCAGAAGGACTCCCTGAGTGAGCTGAGGAAGGAGTGTACTGCCAAAAGGGAACTCTTTCTGAAGACTAATGCTCAGTTGACCATCCGCTGCAGGCAGCTACTCTCAGAGCTGTCCTACATTTACCCTATTGATTTGAATGAGAACAAGGATTATTTTGTATGTGGTGTCAAGTTGCCTAATTCCGAGGACTTCCAAGCAAAAGATGATGGAAGCATTGCCGTCGCCCTTGGTTACACTGCACATTTGGTCTCCATGATCTCCTTCTTCCTACAAGTACCCCTCAGGTATCCCATAATTCACAAGGGGTCCAGATCAACAATCAAAGATAACATCAACGACAAGCTGACAGAAAAGGAGCGAGAGCTTCATAGAGCCCAGTGTGCAATTAAACAGACTCAGGTAACTGTTCAGAGACTTGGAAAGGAAATTGAAGAAAAACTAAGACTCACATCGACAAGCAATGAGCTGAAAAAAGAAAGTGAATGTCTGCGATTGAAAATTTTGGTGCTTCGAAATGAACTGGAAAGACAGAAGAAAGCGCTGGGGCGGGAGGTGGCCTTCCTGCATAAGCAACAGATGGCTCTACAGGACAAAGGAAGTGCATTTTCCACTGAGCATGGCAAGCTCCAGCTGCAGAAGGACTCCCTGAGTGAGCTGAGGAAGGAGTGTACTGCCAAAAGGGAACTCTTTCTGAAGACTAATGCTCAGTTGACCATCCGCTGCAGGCAGCTACTCTCAGAGCTGTCCTACATTTACCCTATTGATTTGAATGAGAACAAGGATTATTTTGTATGTGGTGTCAAGTTGCCTAATTCCGAGGACTTCCAAGCAAAAGATGATGGAAGCATTGCCGTCGCCCTTGGTTACACTGCACATTTGGTCTCCATGATCTCCTTCTTCCTACAAGTACCCCTCAGGTATCCCATAATTCACAAGGGGTCCAGATCAACAATCAAAGATAACATCAACGACAAGCTGACAGAAAAGGAGCGA
Peptide sequence:
MALQDKGSAFSTEHGKLQLQKDSLSELRKECTAKRELFLKTNAQLTIRCRQLLSELSYIYPIDLNENKDYFVCGVKLPNSEDFQAKDDGSIAVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKDNINDKLTEKERELHRAQCAIKQTQVTVQRLGKEIEEKLRLTSTSNELKKESECLRLKILVLRNELERQKKALGREVAFLHKQQMALQDKGSAFSTEHGKLQLQKDSLSELRKECTAKRELFLKTNAQLTIRCRQLLSELSYIYPIDLNENKDYFVCGVKLPNSEDFQAKDDGSIAVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKDNINDKLTEKER
IRESfinder result
IRESfinder score
0.516819463
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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