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mmu_circUty_734
Basic information of circular RNA
PanCircBase ID:
mmu_circUty_734
mm39_Chr. Position ID:
chrY|1129869|1137871|-
Gene name:
Uty
Transcript:
ENSMUST00000143286.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
22,21,20,19,18,17
Exon/intron offsets:
0,1166,5002,6978,7788,7937
Genomic length:
8002
Exon/intron sizes in nt:
142,188,115,149,75,65
Flanking exon/introns:
chrY:1102891-1129869|chrY:1137871-1151947
Splice length:
734
Other database IDs:
CIRCpedia: MMU_CIRCpedia_3482, circAtlas: mmu-Uty_0006
circAtlas: hsa-UTY_0017, CIRCpedia: HSA_CIRCpedia_151420
Human Ortholog IDs:
Mature spliced Sequence:
GAAGAAAATGAAAGAAGAACACAAGTTAAAGACTATTCAGATAATGAATCAACATGTTCAGATAATTCTGGAAGGAGACAGAAAGCACCCTTTAAAACCATAAAATGTGGGATTAACATTGATCTGTCTGATAACAAAAAGTGGAAGTTGCAGTTACATGAGCTGACAAAGCTTCCTGCTTTTGTACGTGTTGTATCAGCAGGGAATCTTCTCAGTCATGTTGGCTATACTATATTGGGGATGAATTCAGTTCAACTATGTATGAAAGTTCCAGGGAGTAGAATACCAGGTCACCAAGAAAATAACAATTTCTGTTCTGTTAACATAAATATTGGTCCAGGTGATTGTGAATGGTTTGTTGTACCTGAAGATTATTGGGGTGTTCTGAATGACTTCTGTGAAAAAAATAATTTGAATTTCCTGATGAGTTCTTGGTGGCCGAACCTTGAAGATCTTTATGAAGCAAATGTTCCTGTTTATAGGTTTATTCAACGACCTGGTGATTTGGTTTGGATAAATGCAGGCACTGTTCACTGGGTTCAGGCTATTGGGTGGTGTAACAACATCACCTGGAATGTTGGTCCACTCACAGCCTTCCAATATAAATTGGCAGTTGAACGATATGAATGGAATAAATTGCAAAGTGTCAAGTCAGTAGTACCCATGGTTCATCTTTCATGGAATATGGCACGAAATATCAAAGTCTCAGATCCAAAGCTTTTTGAAATGATTAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGTCAAGTCAGTAGTACCCATGG
59.49
GGTGCTTTCTGTCTCCTTCCA
59.93
179
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTCAAGTCAGTAGTACCCATGGT
59.49
GGTGCTTTCTGTCTCCTTCCA
59.93
178
PCR template sequence:
AATTGCAAAGTGTCAAGTCAGTAGTACCCATGGTTCATCTTTCATGGAATATGGCACGAAATATCAAAGTCTCAGATCCAAAGCTTTTTGAAATGATTAAGAAGAAAATGAAAGAAGAACACAAGTTAAAGACTATTCAGATAATGAATCAACATGTTCAGATAATTCTGGAAGGAGACAGAAAGCACCCTTTAAAACCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-382-3p(1), mmu-miR-411-3p(1), mmu-miR-370-3p(1), mmu-miR-342-5p(1), mmu-miR-188-3p(1), mmu-miR-3065-5p(1), mmu-miR-1904(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTGAAATGATTAAGAAGAAAATGAAA
siRNA sets
TTTCATTTTCTTCTTAATC, TTCATTTTCTTCTTAATCA, TTTTCTTCTTAATCATTTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCUTY_734_ORF_1
0.8853
-0.119218564
0.547268181
597
ORF sequence:
ATGAATTCAGTTCAACTATGTATGAAAGTTCCAGGGAGTAGAATACCAGGTCACCAAGAAAATAACAATTTCTGTTCTGTTAACATAAATATTGGTCCAGGTGATTGTGAATGGTTTGTTGTACCTGAAGATTATTGGGGTGTTCTGAATGACTTCTGTGAAAAAAATAATTTGAATTTCCTGATGAGTTCTTGGTGGCCGAACCTTGAAGATCTTTATGAAGCAAATGTTCCTGTTTATAGGTTTATTCAACGACCTGGTGATTTGGTTTGGATAAATGCAGGCACTGTTCACTGGGTTCAGGCTATTGGGTGGTGTAACAACATCACCTGGAATGTTGGTCCACTCACAGCCTTCCAATATAAATTGGCAGTTGAACGATATGAATGGAATAAATTGCAAAGTGTCAAGTCAGTAGTACCCATGGTTCATCTTTCATGGAATATGGCACGAAATATCAAAGTCTCAGATCCAAAGCTTTTTGAAATGATTAAGAAGAAAATGAAAGAAGAACACAAGTTAAAGACTATTCAGATAATGAATCAACATGTTCAGATAATTCTGGAAGGAGACAGAAAGCACCCTTTAAAACCATAA
Peptide sequence:
MNSVQLCMKVPGSRIPGHQENNNFCSVNINIGPGDCEWFVVPEDYWGVLNDFCEKNNLNFLMSSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNITWNVGPLTAFQYKLAVERYEWNKLQSVKSVVPMVHLSWNMARNIKVSDPKLFEMIKKKMKEEHKLKTIQIMNQHVQIILEGDRKHPLKP
IRESfinder result
IRESfinder score
0.787528596
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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