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mmu_circUtrn_764
Basic information of circular RNA
PanCircBase ID:
mmu_circUtrn_764
mm39_Chr. Position ID:
chr10|12509687|12524962|-
Gene name:
Utrn
Transcript:
ENSMUST00000076817.5
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
49,48,47,46,45
Exon/intron offsets:
0,2652,6983,9459,15199
Genomic length:
15275
Exon/intron sizes in nt:
155,206,118,209,76
Flanking exon/introns:
chr10:12497124-12509687|chr10:12524962-12528454
Splice length:
764
Other database IDs:
circAtlas: hsa-UTRN_0349
Human Ortholog IDs:
Mature spliced Sequence:
GTATGCAGAGAAGTGCCTAGCCTCCTGAAGACACGCACCCAAGACCCCTGCTCTGCCCCACAGATGAGGATGGCTGCTCATCCCAACGTCCAAAAGGTGGTGCTAGTATCATCTGCATCAGATGCTCCTCTGCGTGGCGGCCTGGAAATCTCGGTTCCTGCTGATTTGGATAAAACCATCACAGAACTGGCTGACTGGCTGGTATTGATCGACCAAATGCTGAAGTCCAACATTGTCACTGTGGGGGACGTGAAAGAGATCAATAAGACAGTTTCCCGGATGAAAATCACAAAGGCTGATTTAGAACAACGCCATCCTCAGCTTGATTGTGTATTTACCTTGGCCCAAAATTTGAAAAACAAAGCTTCCAGTTCAGATGTGAGGACAGCAATCACAGAAAAATTGGAAAAGCTGAAGACCCAGTGGGAGAGTACTCAGCATGGTGTGGAGCTGCGGCGGCAGCAGCTGGAGGACATGGTTGTGGACAGCCTGCAGTGGGACGACCACAGGGAAGAGACTGAAGAGCTCATGAGAAAATACGAGGCTCGCTTCTACATGCTGCAGCAGGCCCGCCGGGACCCACTTAGCAAACAAGTTTCTGATAATCAACTATTGCTTCAAGAGCTGGGGTCTGGCGATGGTGTCATCATGGCGTTTGATAATGTCCTGCAGAAACTTCTGGAAGAATACAGTGGCGATGACACAAGGAATGTGGAAGAAACCACGGAGTACTTGAAAACATCATGGGTCAATCTCAAACAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAGTGGCGATGACACAAGGA
60.32
TTTGGACGTTGGGATGAGCA
59.89
169
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAGTGGCGATGACACAAGGA
60.32
CATCCTCATCTGTGGGGCAG
60.18
147
PCR template sequence:
TCCTGCAGAAACTTCTGGAAGAATACAGTGGCGATGACACAAGGAATGTGGAAGAAACCACGGAGTACTTGAAAACATCATGGGTCAATCTCAAACAAAGGTATGCAGAGAAGTGCCTAGCCTCCTGAAGACACGCACCCAAGACCCCTGCTCTGCCCCACAGATGAGGATGGCTGCTCATCCCAACGTCCAAAAGGTGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-103-3p(1), mmu-miR-26a-5p(1), mmu-miR-29a-3p(1), mmu-miR-298-5p(1), mmu-miR-214-3p(1), mmu-miR-425-5p(1), mmu-miR-215-5p(1), mmu-miR-107-3p(1), mmu-miR-5101(1), mmu-miR-669d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ATCTCAAACAAAGGTATGCAGAGAAG
siRNA sets
TCTGCATACCTTTGTTTGA, CTTCTCTGCATACCTTTGT, TTCTCTGCATACCTTTGTT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCUTRN_764_ORF_1
1.1747
0.304690572
0.978158034
783
ORF sequence:
ATGGGTCAATCTCAAACAAAGGTATGCAGAGAAGTGCCTAGCCTCCTGAAGACACGCACCCAAGACCCCTGCTCTGCCCCACAGATGAGGATGGCTGCTCATCCCAACGTCCAAAAGGTGGTGCTAGTATCATCTGCATCAGATGCTCCTCTGCGTGGCGGCCTGGAAATCTCGGTTCCTGCTGATTTGGATAAAACCATCACAGAACTGGCTGACTGGCTGGTATTGATCGACCAAATGCTGAAGTCCAACATTGTCACTGTGGGGGACGTGAAAGAGATCAATAAGACAGTTTCCCGGATGAAAATCACAAAGGCTGATTTAGAACAACGCCATCCTCAGCTTGATTGTGTATTTACCTTGGCCCAAAATTTGAAAAACAAAGCTTCCAGTTCAGATGTGAGGACAGCAATCACAGAAAAATTGGAAAAGCTGAAGACCCAGTGGGAGAGTACTCAGCATGGTGTGGAGCTGCGGCGGCAGCAGCTGGAGGACATGGTTGTGGACAGCCTGCAGTGGGACGACCACAGGGAAGAGACTGAAGAGCTCATGAGAAAATACGAGGCTCGCTTCTACATGCTGCAGCAGGCCCGCCGGGACCCACTTAGCAAACAAGTTTCTGATAATCAACTATTGCTTCAAGAGCTGGGGTCTGGCGATGGTGTCATCATGGCGTTTGATAATGTCCTGCAGAAACTTCTGGAAGAATACAGTGGCGATGACACAAGGAATGTGGAAGAAACCACGGAGTACTTGAAAACATCATGGGTCAATCTCAAACAA
Peptide sequence:
MGQSQTKVCREVPSLLKTRTQDPCSAPQMRMAAHPNVQKVVLVSSASDAPLRGGLEISVPADLDKTITELADWLVLIDQMLKSNIVTVGDVKEINKTVSRMKITKADLEQRHPQLDCVFTLAQNLKNKASSSDVRTAITEKLEKLKTQWESTQHGVELRRQQLEDMVVDSLQWDDHREETEELMRKYEARFYMLQQARRDPLSKQVSDNQLLLQELGSGDGVIMAFDNVLQKLLEEYSGDDTRNVEETTEYLKTSWVNLKQ
IRESfinder result
IRESfinder score
0.389613059
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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