top of page
mmu_circUtrn_7214
Basic information of circular RNA
PanCircBase ID:
mmu_circUtrn_7214
mm39_Chr. Position ID:
chr10|12331106|12604562|-
Gene name:
Utrn
Transcript:
ENSMUST00000076817.5
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
47
Exon/intron indexes:
60,59,58,57,56,55,54,53,52,51,50,49,48,47,46,45,44,43,42,41,40,39,38,37,36,35,34,33,32,31,30,29,28,27,26,25,24,23,22,21,20,19,18,17,16,15,14
Exon/intron offsets:
0,7923,9818,19908,23050,25861,31023,46015,69975,82678,165828,178581,181233,185564,188040,193780,197348,199336,203133,205416,208003,209584,211336,212137,214293,214757,216388,223217,225109,226914,227882,229047,230969,232930,235367,238001,242626,243639,254603,256075,257891,258770,264655,265456,270848,272370,273348
Genomic length:
273456
Exon/intron sizes in nt:
20,27,56,26,17,91,47,20,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr10:12323836-12331106|chr10:12604562-12609642
Splice length:
7214
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TGTCTGTTGGAGGCTTGGCTCACCGAAAAGGAAGAGGCTTTGAATAAAGTTCAAACCAGCAACTTTAAAGACCAGAAGGAACTAAGTGTCAGTGTCCGGCGTCTGGCTATATTGAAGGAAGACATGGAAATGAAGAGGCAGACTCTGGATCAACTGAGTGAGATTGGCCAGGATGTGGGCCAATTACTCAGTAATCCCAAGGCATCTAAGAAGATGAACAGTGACTCTGAGGAGCTAACACAGAGATGGGATTCTCTGGTTCAGAGACTCGAAGACTCTTCTAACCAGGTGACTCAGGCGGTAGCGAAGCTCGGCATGTCCCAGATTCCACAGAAGGACCTATTGGAGACCGTTCATGTGAGAGAACAAGGGATGGTGAAGAAGCCCAAGCAGGAACTGCCTCCTCCTCCCCCACCAAAGAAGAGACAGATTCACGTGGACGTGGAGGCCAAGAAAAAGTTTGATGCTATAAGTACAGAGCTGCTGAACTGGATTTTGAAATCAAAGACTGCCATTCAGAACACAGAGATGAAAGAATATAAGAAGTCGCAGGAGACCTCAGGAATGAAAAAGAAATTGAAGGGATTAGAGAAAGAACAGAAGGAAAATCTGCCCCGACTGGACGAACTGAATCAAACCGGACAAACCCTCCGGGAGCAAATGGGAAAAGAAGGCCTTTCCACTGAAGAAGTAAACGATGTTCTGGAAAGGGTTTCGTTGGAGTGGAAGATGATATCTCAGCAGCTAGAAGATCTGGGAAGGAAGATCCAGCTGCAGGAAGATATAAATGCTTATTTTAAGCAGCTTGATGCCATTGAGGAGACCATCAAGGAGAAGGAAGAGTGGCTGAGGGGCACACCCATTTCTGAATCGCCCCGGCAGCCCTTGCCAGGCTTAAAGGATTCTTGCCAGAGGGAACTGACAGATCTCCTTGGCCTTCACCCCAGAATTGAGACGCTGTGTGCAAGCTGTTCAGCCCTGAAGTCTCAGCCCTGTGTCCCAGGTTTTGTCCAGCAGGGTTTTGACGACCTTCGACATCATTACCAGGCTGTGCGGAAGGCTTTAGAGGAATACCAACAACAACTAGAAAATGAGCTGAAGAGCCAGCCTGGACCCGCGTATTTGGACACACTGAATACCCTGAAAAAAATGCTAAGCGAGTCAGAAAAGGCGGCCCAGGCCTCTCTGAATGCCCTGAACGATCCCATAGCGGTGGAGCAGGCCCTGCAGGAGAAAAAGGCCCTTGATGAAACCCTTGAGAATCAGAAACATACGTTACATAAGCTTTCAGAAGAAACGAAGACTTTGGAGAAAAATATGCTTCCTGATGTGGGGAAAATGTATAAACAAGAATTTGATGATGTCCAAGGCAGATGGAATAAAGTAAAGACCAAGGTTTCCAGAGACTTACACTTGCTCGAGGAAATCACCCCCAGACTCCGAGATTTTGAGGCTGATTCAGAAGTCATTGAGAAGTGGGTGAGTGGCATCAAAGACTTCCTCATGAAAGAACAGGCTGCTCAAGGAGACGCTGCTGCGCTGCAGAGCCAGCTTGACCAATGTGCTACGTTTGCTAATGAAATCGAAACCATCGAGTCATCTCTGAAGAACATGAGGGAAGTAGAGACTAGCCTTCAGAGGTGTCCAGTCACTGGAGTCAAGACATGGGTACAGGCAAGACTAGTGGATTACCAATCCCAACTGGAGAAATTCAGCAAAGAGATTGCTATTCAAAAAAGCAGGCTGTCAGATAGTCAAGAAAAAGCCCTGAACTTGAAAAAGGATTTGGCTGAGATGCAGGAGTGGATGGCACAGGCTGAAGAGGACTACCTGGAGAGGGACTTCGAGTACAAATCTCCAGAAGAACTCGAGAGTGCGGTGGAGGAAATGAAGAGGGCAAAAGAGGAGGTGCTGCAGAAGGAGGTGAGGGTGAAAATTCTGAAGGACAGCATCAAGCTGGTGGCTGCCAAGGTGCCCTCTGGTGGCCAGGAGTTGACGTCGGAATTCAACGAGGTGCTGGAGAGCTACCAGCTTCTGTGCAATAGAATTCGAGGGAAGTGCCACACACTGGAGGAGGTCTGGTCTTGCTGGGTGGAGCTGCTTCACTATCTGGACCTGGAGACCACGTGGTTGAACACCTTGGAGGAGCGCGTGAGGAGCACGGAGGCCCTGCCTGAGAGGGCAGAAGCTGTTCATGAAGCTCTGGAGTCTCTTGAGTCTGTTTTGCGCCATCCGGCGGATAATCGCACCCAGATTCGGGAACTTGGGCAGACTCTGATTGATGGTGGAATCCTGGATGACATAATCAGCGAGAAGCTGGAGGCTTTTAACAGCCGCTACGAAGAGCTGAGTCACTTGGCGGAGAGCAAACAGATTTCTTTGGAGAAGCAACTCCAGGTCCTCCGCGAAACTGACCACATGCTTCAGGTGCTGAAGGAGAGCCTGGGGGAGCTGGACAAACAGCTTACCACATACCTGACGGACAGGATCGATGCCTTCCAACTGCCACAGGAAGCTCAGAAGATCCAAGCCGAAATCTCAGCCCATGAGCTCACCCTGGAGGAGCTGAGGAAGAATGTGCGCTCCCAGCCCCCGACGTCCCCTGAGGGCAGGGCCACCAGAGGAGGAAGTCAGATGGACATGCTACAGAGGAAACTTCGAGAGGTCTCCACCAAATTCCAGCTTTTCCAGAAGCCCGCAAATTTCGAGCAGCGGATGCTGGACTGCAAGCGTGTGTTGGAGGGAGTGAAGGCCGAGCTTCATGTCCTCGATGTGAGGGATGTGGACCCTGACGTCATTCAGGCCCACTTGGACAAGTGCATGAAACTATATAAAACGTTGAGTGAAGTCAAACTTGAAGTTGAGACTGTCATCAAAACAGGGAGGCACATTGTCCAGAAGCAGCAGACGGACAACCCGAAAAGCATGGACGAACAGCTTACATCTCTGAAAGTCCTCTACAATGACCTGGGCGCACAGGTGACAGAAGGGAAGCAAGACCTGGAAAGAGCCTCACAGCTGTCCAGGAAGATGAAGAAGGAGGCTGCCGTCCTCTCTGAATGGCTCTCTGCCACAGAGGCAGAACTAGTGCAGAAATCCACATCAGAAGGCGTGATTGGTGACCTGGACACAGAAATCTCCTGGGCTAAAAGTATTCTCAAGGATCTGGAAAAGAGGAAAGTTGACTTAAATGGCATTACAGAGAGCAGTGCCGCCCTTCAGCACTTGGTCTTGGGCAGTGAGTCTGTTCTGGAAGAGAACCTCTGTGTGCTCAATGCTGGATGGAGCCGAGTGCGGACGTGGACCGAAGACTGGTGCAACACCTTGCTGAACCATCAAAACCAGCTGGAGCTATTTGATGGACACGTCGCTCACATCAGTACCTGGCTCTATCAAGCCGAAGCTCTGCTGGATGAGATCGAAAAGAAACCAGCGAGTAAACAGGAAGAAATTGTGAAGCGTTTACTGTCTGAATTGGATGATGCCAGCCTCCAGGTTGAGAATGTTCGGGAACAAGCCATCATCTTGGTGAATGCTCGTGGAAGCGCCAGCAGGGAACTCGTGGAACCAAAATTAGCCGAGCTGAGCAGGAACTTTGAAAAGGTGTCCCAGCACATAAAGAGCGCCCGAATGCTGATTGGTCAGGACCCTTCATCCTACCAAGGCTTGGACCCTGCTGGAACTGTTCAAGCTGCTGAGTCTTTCTCTGACTTGGAAAACTTAGAACAAGACATAGAAAACATGTTGAAAGTTGTGGAAAAGCACTTGGACCCCAATAACGATGAGAAGATGGATGAGGAGCAAGCCCAGATTGAGGAAGTTCTACAAAGAGGGGAGCATTTGTTACATGAACCTATGGAGGACAGTAAGAAAGAAAAGATCCGCTTGCAGTTGTTACTTTTGCATACTCGTTACAACAAAATTAAGACAATCCCTATCCAGCAGAGAAAAACAATTCCAGTTTCTTCTGGAATTACATCATCAGCCCTCCCTGCAGATTATTTGGTTGAAATTAATAAAATTTTACTCACTCTGGATGACATTGAATTATCACTTAATATGCCGGAGCTAAACACCACTGTCTACAAAGACTTCTCTTTCCAGGAAGACTCTCTGAAGAGTATCAAAGGTCAACTGGACAGACTTGGAGAGCAGATTGCAGTTGTTCACGAGAAGCAGCCGGATGTCATCGTGGAAGCCTCTGGCCCTGAGGCCATTCAGATCAGGGACATGCTCGCTCAGCTGAATGCAAAATGGGACCGAGTGAATAGAGTGTACAGTGATCGGAGAGGGTCCTTTGCCAGGGCTGTGGAGGAATGGAGGCAGTTCCACCATGACCTTGATGACCTTACACAGTGGCTATCTGAAGCTGAAGACCTGCTGGTAGACACTTGTGCTCCAGATGGTAGCCTGGACCTGGAGAAAGCCAGGGCACAGCAGCTGGAACTGGAAGAGGGCCTCAGCAGCCACCAGCCCAGCCTGATCAAGGTTAACCGAAAGGGGGAGGACCTTGTTCAGAGACTCCGCCCCTCGGAGGCAAGCTTCCTGAAGGAGAAGCTGGCAGGTTTCAACCAGCGCTGGAGCACTCTTGTAGCTGAGGTGGAGGCTTTGCAGCCCAGGCTAAAAGGAGAAAGTCAGCAGGTGTTGGGGTATAAGAGACGGCTAGATGAGGTCACCTGCTGGTTAACGAAAGTGGAGAGTGCTGTGCAGAAGAGATCAACCCCTGACCCGGAAGAAAGCCCACAGGAATTAACAGATTTAGCCCAAGAGACGGAAGTTCAAGCTGAAAACATTAAGTGGCTGAACAGAGCAGAACTGGAAATGCTTTCAGACAAAAATCTGAGTTTGCGTGAAAGAGAGAAACTTTCGGAAAGTTTAAGGAATGTAAACACAACATGGACCAAGGTATGCAGAGAAGTGCCTAGCCTCCTGAAGACACGCACCCAAGACCCCTGCTCTGCCCCACAGATGAGGATGGCTGCTCATCCCAACGTCCAAAAGGTGGTGCTAGTATCATCTGCATCAGATGCTCCTCTGCGTGGCGGCCTGGAAATCTCGGTTCCTGCTGATTTGGATAAAACCATCACAGAACTGGCTGACTGGCTGGTATTGATCGACCAAATGCTGAAGTCCAACATTGTCACTGTGGGGGACGTGAAAGAGATCAATAAGACAGTTTCCCGGATGAAAATCACAAAGGCTGATTTAGAACAACGCCATCCTCAGCTTGATTGTGTATTTACCTTGGCCCAAAATTTGAAAAACAAAGCTTCCAGTTCAGATGTGAGGACAGCAATCACAGAAAAATTGGAAAAGCTGAAGACCCAGTGGGAGAGTACTCAGCATGGTGTGGAGCTGCGGCGGCAGCAGCTGGAGGACATGGTTGTGGACAGCCTGCAGTGGGACGACCACAGGGAAGAGACTGAAGAGCTCATGAGAAAATACGAGGCTCGCTTCTACATGCTGCAGCAGGCCCGCCGGGACCCACTTAGCAAACAAGTTTCTGATAATCAACTATTGCTTCAAGAGCTGGGGTCTGGCGATGGTGTCATCATGGCGTTTGATAATGTCCTGCAGAAACTTCTGGAAGAATACAGTGGCGATGACACAAGGAATGTGGAAGAAACCACGGAGTACTTGAAAACATCATGGGTCAATCTCAAACAAAGCATCGCTGATAGACAGAGTGCCTTGGAGGCTGAGCTACAGACAGTGCAGACTTCTCGTAGAGACCTGGAGAACTTTGTCAAGTGGCTTCAGGAAGCAGAAACCACAGCAAATGTGCTGGCCGATGCCTCTCAGCGGGAGAATGCTCTTCAGGACAGTGTCCTGGCCCGGCAGCTCCGACAGCAGATGCTGGACATCCAGGCAGAAATTGATGCCCACAATGACATATTTAAAAGCATCGATGGAAACCGGCAGAAGATGGTGAAAGCTCTGGGGAATTCTGAGGAAGCAACAATGCTTCAGCATCGACTGGATGACATGAACCAAAGATGGAATGATTTGAAGGCAAAATCTGCTAGCATCAGGGCCCATTTGGAGGCCAGTGCTGAGAAATGGAACCGGTTGCTGGCATCGCTGGAAGAGCTGATCAAATGGCTCAATATGAAAGATGAGGAGCTTAAGAAGCAGATGCCCATTGGAGGGGACGTCCCTGCCTTACAGCTCCAGTATGACCACTGCAAGGTGCTGAGACGTGAGCTAAAGGAGAAAGAGTATTCTGTGCTGAACGCCGTAGATCAAGCTCGAGTTTTTCTGGCTGATCAGCCAATAGAGGCCCCCGAAGAACCAAGAAGAAACCCACAATCAAAGACAGAGTTGACTCCTGAGGAGAGAGCCCAGAAGATCGCCAAAGCCATGCGCAAGCAGTCTTCTGAAGTCCGAGAGAAGTGGGAAAATCTAAATGCTGTCACTAGCAACTGGCAAAAGCAAGTAGGGAAGGCGTTAGAGAAACTCCGAGACCTGCAGGGAGCTATGGACGACCTGGACGCAGACATGAAGGAGGTGGAGGCTGTGCGGAATGGCTGGAAGCCCGTGGGAGACCTGCTTATAGACTCCCTGCAGGATCACATCGAGAAAACCCTGGCGTTTAGAGAAGAAATTGCACCAATCAACTTAAAAGTAAAAACAATGAATGACCTGTCCAGTCAGCTGTCTCCACTTGACTTGCATCCATCTCTAAAGATGTCTCGCCAGCTGGATGACCTTAATATGCGATGGAAACTTCTACAGGTTTCCGTGGACGATCGCCTTAAGCAGCTCCAGGAAGCCCACAGAGATTTTGGGCCATCTTCTCAACACTTTCTGTCCACTTCAGTCCAGCTGCCGTGGCAGAGATCCATTTCACATAATAAAGTGCCCTATTACATCAACCATCAAACACAGACAACCTGTTGGGATCATCCTAAAATGACTGAGCTCTTCCAATCCCTTGCTGATCTGAATAATGTACGTTTCTCTGCCTACCGCACAGCAATCAAAATTCGAAGGCTGCAAAAAGCATTATGTCTGGATCTCTTAGAGCTGAATACGACGAATGAAGTTTTCAAGCAGCACAAACTGAACCAAAATGATCAGCTCCTGAGTGTCCCAGACGTCATCAACTGTCTGACCACCACTTACGATGGGCTTGAGCAGCTGCACAAGGACTTGGTCAATGTTCCACTCTGCGTCGATATGTGTCTCAACTGGCTGCTCAACGTATACGACAC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AATGTTCCACTCTGCGTCGA
59.68
GCCGGACACTGACACTTAGT
59.68
156
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAATGTTCCACTCTGCGTCG
59.56
GCCGGACACTGACACTTAGT
59.68
157
PCR template sequence:
CCACCACTTACGATGGGCTTGAGCAGCTGCACAAGGACTTGGTCAATGTTCCACTCTGCGTCGATATGTGTCTCAACTGGCTGCTCAACGTATACGACACTGTCTGTTGGAGGCTTGGCTCACCGAAAAGGAAGAGGCTTTGAATAAAGTTCAAACCAGCAACTTTAAAGACCAGAAGGAACTAAGTGTCAGTGTCCGGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
49
Interacting miRNAs (#binding sites)
mmu-miR-541-5p(3), mmu-miR-207(3), mmu-miR-1904(3), mmu-miR-29b-1-5p(2), mmu-miR-338-3p(2), mmu-miR-124-3p(1), mmu-miR-155-5p(1), mmu-miR-134-5p(1), mmu-miR-199a-5p(1), mmu-miR-103-3p(1), mmu-miR-135a-5p(1), mmu-miR-223-3p(1), mmu-miR-26a-5p(1), mmu-miR-205-5p(1), mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-322-5p(1), mmu-miR-29a-3p(1), mmu-miR-298-5p(1), mmu-miR-320-3p(1), mmu-miR-25-3p(1), mmu-miR-138-5p(1), mmu-miR-10b-5p(1), mmu-miR-214-3p(1), mmu-miR-431-5p(1), mmu-miR-363-3p(1), mmu-miR-22-3p(1), mmu-miR-411-3p(1), mmu-miR-370-3p(1), mmu-miR-425-5p(1), mmu-miR-215-5p(1), mmu-miR-324-3p(1), mmu-miR-107-3p(1), mmu-miR-680(1), mmu-miR-690(1), mmu-miR-129-5p(1), mmu-miR-5101(1), mmu-miR-335-3p(1), mmu-miR-532-5p(1), mmu-miR-669d-5p(1), mmu-miR-452-3p(1), mmu-miR-3470b(1), mmu-miR-540-3p(1), mmu-miR-670-5p(1), mmu-miR-697(1), mmu-miR-490-3p(1), mmu-miR-3061-5p(1), mmu-miR-3105-3p(1), mmu-miR-193b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ACGTATACGACACTGTCTGTTGGAGG
siRNA sets
CTCCAACAGACAGTGTCGT, ACAGACAGTGTCGTATACG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCUTRN_7214_ORF_1
1.1603
0.327859632
1
7134
ORF sequence:
ATGGAAATGAAGAGGCAGACTCTGGATCAACTGAGTGAGATTGGCCAGGATGTGGGCCAATTACTCAGTAATCCCAAGGCATCTAAGAAGATGAACAGTGACTCTGAGGAGCTAACACAGAGATGGGATTCTCTGGTTCAGAGACTCGAAGACTCTTCTAACCAGGTGACTCAGGCGGTAGCGAAGCTCGGCATGTCCCAGATTCCACAGAAGGACCTATTGGAGACCGTTCATGTGAGAGAACAAGGGATGGTGAAGAAGCCCAAGCAGGAACTGCCTCCTCCTCCCCCACCAAAGAAGAGACAGATTCACGTGGACGTGGAGGCCAAGAAAAAGTTTGATGCTATAAGTACAGAGCTGCTGAACTGGATTTTGAAATCAAAGACTGCCATTCAGAACACAGAGATGAAAGAATATAAGAAGTCGCAGGAGACCTCAGGAATGAAAAAGAAATTGAAGGGATTAGAGAAAGAACAGAAGGAAAATCTGCCCCGACTGGACGAACTGAATCAAACCGGACAAACCCTCCGGGAGCAAATGGGAAAAGAAGGCCTTTCCACTGAAGAAGTAAACGATGTTCTGGAAAGGGTTTCGTTGGAGTGGAAGATGATATCTCAGCAGCTAGAAGATCTGGGAAGGAAGATCCAGCTGCAGGAAGATATAAATGCTTATTTTAAGCAGCTTGATGCCATTGAGGAGACCATCAAGGAGAAGGAAGAGTGGCTGAGGGGCACACCCATTTCTGAATCGCCCCGGCAGCCCTTGCCAGGCTTAAAGGATTCTTGCCAGAGGGAACTGACAGATCTCCTTGGCCTTCACCCCAGAATTGAGACGCTGTGTGCAAGCTGTTCAGCCCTGAAGTCTCAGCCCTGTGTCCCAGGTTTTGTCCAGCAGGGTTTTGACGACCTTCGACATCATTACCAGGCTGTGCGGAAGGCTTTAGAGGAATACCAACAACAACTAGAAAATGAGCTGAAGAGCCAGCCTGGACCCGCGTATTTGGACACACTGAATACCCTGAAAAAAATGCTAAGCGAGTCAGAAAAGGCGGCCCAGGCCTCTCTGAATGCCCTGAACGATCCCATAGCGGTGGAGCAGGCCCTGCAGGAGAAAAAGGCCCTTGATGAAACCCTTGAGAATCAGAAACATACGTTACATAAGCTTTCAGAAGAAACGAAGACTTTGGAGAAAAATATGCTTCCTGATGTGGGGAAAATGTATAAACAAGAATTTGATGATGTCCAAGGCAGATGGAATAAAGTAAAGACCAAGGTTTCCAGAGACTTACACTTGCTCGAGGAAATCACCCCCAGACTCCGAGATTTTGAGGCTGATTCAGAAGTCATTGAGAAGTGGGTGAGTGGCATCAAAGACTTCCTCATGAAAGAACAGGCTGCTCAAGGAGACGCTGCTGCGCTGCAGAGCCAGCTTGACCAATGTGCTACGTTTGCTAATGAAATCGAAACCATCGAGTCATCTCTGAAGAACATGAGGGAAGTAGAGACTAGCCTTCAGAGGTGTCCAGTCACTGGAGTCAAGACATGGGTACAGGCAAGACTAGTGGATTACCAATCCCAACTGGAGAAATTCAGCAAAGAGATTGCTATTCAAAAAAGCAGGCTGTCAGATAGTCAAGAAAAAGCCCTGAACTTGAAAAAGGATTTGGCTGAGATGCAGGAGTGGATGGCACAGGCTGAAGAGGACTACCTGGAGAGGGACTTCGAGTACAAATCTCCAGAAGAACTCGAGAGTGCGGTGGAGGAAATGAAGAGGGCAAAAGAGGAGGTGCTGCAGAAGGAGGTGAGGGTGAAAATTCTGAAGGACAGCATCAAGCTGGTGGCTGCCAAGGTGCCCTCTGGTGGCCAGGAGTTGACGTCGGAATTCAACGAGGTGCTGGAGAGCTACCAGCTTCTGTGCAATAGAATTCGAGGGAAGTGCCACACACTGGAGGAGGTCTGGTCTTGCTGGGTGGAGCTGCTTCACTATCTGGACCTGGAGACCACGTGGTTGAACACCTTGGAGGAGCGCGTGAGGAGCACGGAGGCCCTGCCTGAGAGGGCAGAAGCTGTTCATGAAGCTCTGGAGTCTCTTGAGTCTGTTTTGCGCCATCCGGCGGATAATCGCACCCAGATTCGGGAACTTGGGCAGACTCTGATTGATGGTGGAATCCTGGATGACATAATCAGCGAGAAGCTGGAGGCTTTTAACAGCCGCTACGAAGAGCTGAGTCACTTGGCGGAGAGCAAACAGATTTCTTTGGAGAAGCAACTCCAGGTCCTCCGCGAAACTGACCACATGCTTCAGGTGCTGAAGGAGAGCCTGGGGGAGCTGGACAAACAGCTTACCACATACCTGACGGACAGGATCGATGCCTTCCAACTGCCACAGGAAGCTCAGAAGATCCAAGCCGAAATCTCAGCCCATGAGCTCACCCTGGAGGAGCTGAGGAAGAATGTGCGCTCCCAGCCCCCGACGTCCCCTGAGGGCAGGGCCACCAGAGGAGGAAGTCAGATGGACATGCTACAGAGGAAACTTCGAGAGGTCTCCACCAAATTCCAGCTTTTCCAGAAGCCCGCAAATTTCGAGCAGCGGATGCTGGACTGCAAGCGTGTGTTGGAGGGAGTGAAGGCCGAGCTTCATGTCCTCGATGTGAGGGATGTGGACCCTGACGTCATTCAGGCCCACTTGGACAAGTGCATGAAACTATATAAAACGTTGAGTGAAGTCAAACTTGAAGTTGAGACTGTCATCAAAACAGGGAGGCACATTGTCCAGAAGCAGCAGACGGACAACCCGAAAAGCATGGACGAACAGCTTACATCTCTGAAAGTCCTCTACAATGACCTGGGCGCACAGGTGACAGAAGGGAAGCAAGACCTGGAAAGAGCCTCACAGCTGTCCAGGAAGATGAAGAAGGAGGCTGCCGTCCTCTCTGAATGGCTCTCTGCCACAGAGGCAGAACTAGTGCAGAAATCCACATCAGAAGGCGTGATTGGTGACCTGGACACAGAAATCTCCTGGGCTAAAAGTATTCTCAAGGATCTGGAAAAGAGGAAAGTTGACTTAAATGGCATTACAGAGAGCAGTGCCGCCCTTCAGCACTTGGTCTTGGGCAGTGAGTCTGTTCTGGAAGAGAACCTCTGTGTGCTCAATGCTGGATGGAGCCGAGTGCGGACGTGGACCGAAGACTGGTGCAACACCTTGCTGAACCATCAAAACCAGCTGGAGCTATTTGATGGACACGTCGCTCACATCAGTACCTGGCTCTATCAAGCCGAAGCTCTGCTGGATGAGATCGAAAAGAAACCAGCGAGTAAACAGGAAGAAATTGTGAAGCGTTTACTGTCTGAATTGGATGATGCCAGCCTCCAGGTTGAGAATGTTCGGGAACAAGCCATCATCTTGGTGAATGCTCGTGGAAGCGCCAGCAGGGAACTCGTGGAACCAAAATTAGCCGAGCTGAGCAGGAACTTTGAAAAGGTGTCCCAGCACATAAAGAGCGCCCGAATGCTGATTGGTCAGGACCCTTCATCCTACCAAGGCTTGGACCCTGCTGGAACTGTTCAAGCTGCTGAGTCTTTCTCTGACTTGGAAAACTTAGAACAAGACATAGAAAACATGTTGAAAGTTGTGGAAAAGCACTTGGACCCCAATAACGATGAGAAGATGGATGAGGAGCAAGCCCAGATTGAGGAAGTTCTACAAAGAGGGGAGCATTTGTTACATGAACCTATGGAGGACAGTAAGAAAGAAAAGATCCGCTTGCAGTTGTTACTTTTGCATACTCGTTACAACAAAATTAAGACAATCCCTATCCAGCAGAGAAAAACAATTCCAGTTTCTTCTGGAATTACATCATCAGCCCTCCCTGCAGATTATTTGGTTGAAATTAATAAAATTTTACTCACTCTGGATGACATTGAATTATCACTTAATATGCCGGAGCTAAACACCACTGTCTACAAAGACTTCTCTTTCCAGGAAGACTCTCTGAAGAGTATCAAAGGTCAACTGGACAGACTTGGAGAGCAGATTGCAGTTGTTCACGAGAAGCAGCCGGATGTCATCGTGGAAGCCTCTGGCCCTGAGGCCATTCAGATCAGGGACATGCTCGCTCAGCTGAATGCAAAATGGGACCGAGTGAATAGAGTGTACAGTGATCGGAGAGGGTCCTTTGCCAGGGCTGTGGAGGAATGGAGGCAGTTCCACCATGACCTTGATGACCTTACACAGTGGCTATCTGAAGCTGAAGACCTGCTGGTAGACACTTGTGCTCCAGATGGTAGCCTGGACCTGGAGAAAGCCAGGGCACAGCAGCTGGAACTGGAAGAGGGCCTCAGCAGCCACCAGCCCAGCCTGATCAAGGTTAACCGAAAGGGGGAGGACCTTGTTCAGAGACTCCGCCCCTCGGAGGCAAGCTTCCTGAAGGAGAAGCTGGCAGGTTTCAACCAGCGCTGGAGCACTCTTGTAGCTGAGGTGGAGGCTTTGCAGCCCAGGCTAAAAGGAGAAAGTCAGCAGGTGTTGGGGTATAAGAGACGGCTAGATGAGGTCACCTGCTGGTTAACGAAAGTGGAGAGTGCTGTGCAGAAGAGATCAACCCCTGACCCGGAAGAAAGCCCACAGGAATTAACAGATTTAGCCCAAGAGACGGAAGTTCAAGCTGAAAACATTAAGTGGCTGAACAGAGCAGAACTGGAAATGCTTTCAGACAAAAATCTGAGTTTGCGTGAAAGAGAGAAACTTTCGGAAAGTTTAAGGAATGTAAACACAACATGGACCAAGGTATGCAGAGAAGTGCCTAGCCTCCTGAAGACACGCACCCAAGACCCCTGCTCTGCCCCACAGATGAGGATGGCTGCTCATCCCAACGTCCAAAAGGTGGTGCTAGTATCATCTGCATCAGATGCTCCTCTGCGTGGCGGCCTGGAAATCTCGGTTCCTGCTGATTTGGATAAAACCATCACAGAACTGGCTGACTGGCTGGTATTGATCGACCAAATGCTGAAGTCCAACATTGTCACTGTGGGGGACGTGAAAGAGATCAATAAGACAGTTTCCCGGATGAAAATCACAAAGGCTGATTTAGAACAACGCCATCCTCAGCTTGATTGTGTATTTACCTTGGCCCAAAATTTGAAAAACAAAGCTTCCAGTTCAGATGTGAGGACAGCAATCACAGAAAAATTGGAAAAGCTGAAGACCCAGTGGGAGAGTACTCAGCATGGTGTGGAGCTGCGGCGGCAGCAGCTGGAGGACATGGTTGTGGACAGCCTGCAGTGGGACGACCACAGGGAAGAGACTGAAGAGCTCATGAGAAAATACGAGGCTCGCTTCTACATGCTGCAGCAGGCCCGCCGGGACCCACTTAGCAAACAAGTTTCTGATAATCAACTATTGCTTCAAGAGCTGGGGTCTGGCGATGGTGTCATCATGGCGTTTGATAATGTCCTGCAGAAACTTCTGGAAGAATACAGTGGCGATGACACAAGGAATGTGGAAGAAACCACGGAGTACTTGAAAACATCATGGGTCAATCTCAAACAAAGCATCGCTGATAGACAGAGTGCCTTGGAGGCTGAGCTACAGACAGTGCAGACTTCTCGTAGAGACCTGGAGAACTTTGTCAAGTGGCTTCAGGAAGCAGAAACCACAGCAAATGTGCTGGCCGATGCCTCTCAGCGGGAGAATGCTCTTCAGGACAGTGTCCTGGCCCGGCAGCTCCGACAGCAGATGCTGGACATCCAGGCAGAAATTGATGCCCACAATGACATATTTAAAAGCATCGATGGAAACCGGCAGAAGATGGTGAAAGCTCTGGGGAATTCTGAGGAAGCAACAATGCTTCAGCATCGACTGGATGACATGAACCAAAGATGGAATGATTTGAAGGCAAAATCTGCTAGCATCAGGGCCCATTTGGAGGCCAGTGCTGAGAAATGGAACCGGTTGCTGGCATCGCTGGAAGAGCTGATCAAATGGCTCAATATGAAAGATGAGGAGCTTAAGAAGCAGATGCCCATTGGAGGGGACGTCCCTGCCTTACAGCTCCAGTATGACCACTGCAAGGTGCTGAGACGTGAGCTAAAGGAGAAAGAGTATTCTGTGCTGAACGCCGTAGATCAAGCTCGAGTTTTTCTGGCTGATCAGCCAATAGAGGCCCCCGAAGAACCAAGAAGAAACCCACAATCAAAGACAGAGTTGACTCCTGAGGAGAGAGCCCAGAAGATCGCCAAAGCCATGCGCAAGCAGTCTTCTGAAGTCCGAGAGAAGTGGGAAAATCTAAATGCTGTCACTAGCAACTGGCAAAAGCAAGTAGGGAAGGCGTTAGAGAAACTCCGAGACCTGCAGGGAGCTATGGACGACCTGGACGCAGACATGAAGGAGGTGGAGGCTGTGCGGAATGGCTGGAAGCCCGTGGGAGACCTGCTTATAGACTCCCTGCAGGATCACATCGAGAAAACCCTGGCGTTTAGAGAAGAAATTGCACCAATCAACTTAAAAGTAAAAACAATGAATGACCTGTCCAGTCAGCTGTCTCCACTTGACTTGCATCCATCTCTAAAGATGTCTCGCCAGCTGGATGACCTTAATATGCGATGGAAACTTCTACAGGTTTCCGTGGACGATCGCCTTAAGCAGCTCCAGGAAGCCCACAGAGATTTTGGGCCATCTTCTCAACACTTTCTGTCCACTTCAGTCCAGCTGCCGTGGCAGAGATCCATTTCACATAATAAAGTGCCCTATTACATCAACCATCAAACACAGACAACCTGTTGGGATCATCCTAAAATGACTGAGCTCTTCCAATCCCTTGCTGATCTGAATAATGTACGTTTCTCTGCCTACCGCACAGCAATCAAAATTCGAAGGCTGCAAAAAGCATTATGTCTGGATCTCTTAGAGCTGAATACGACGAATGAAGTTTTCAAGCAGCACAAACTGAACCAAAATGATCAGCTCCTGAGTGTCCCAGACGTCATCAACTGTCTGACCACCACTTACGATGGGCTTGAGCAGCTGCACAAGGACTTGGTCAATGTTCCACTCTGCGTCGATATGTGTCTCAACTGGCTGCTCAACGTATACGACACTGTCTGTTGGAGGCTTGGCTCACCGAAAAGGAAGAGGCTTTGA
Peptide sequence:
MEMKRQTLDQLSEIGQDVGQLLSNPKASKKMNSDSEELTQRWDSLVQRLEDSSNQVTQAVAKLGMSQIPQKDLLETVHVREQGMVKKPKQELPPPPPPKKRQIHVDVEAKKKFDAISTELLNWILKSKTAIQNTEMKEYKKSQETSGMKKKLKGLEKEQKENLPRLDELNQTGQTLREQMGKEGLSTEEVNDVLERVSLEWKMISQQLEDLGRKIQLQEDINAYFKQLDAIEETIKEKEEWLRGTPISESPRQPLPGLKDSCQRELTDLLGLHPRIETLCASCSALKSQPCVPGFVQQGFDDLRHHYQAVRKALEEYQQQLENELKSQPGPAYLDTLNTLKKMLSESEKAAQASLNALNDPIAVEQALQEKKALDETLENQKHTLHKLSEETKTLEKNMLPDVGKMYKQEFDDVQGRWNKVKTKVSRDLHLLEEITPRLRDFEADSEVIEKWVSGIKDFLMKEQAAQGDAAALQSQLDQCATFANEIETIESSLKNMREVETSLQRCPVTGVKTWVQARLVDYQSQLEKFSKEIAIQKSRLSDSQEKALNLKKDLAEMQEWMAQAEEDYLERDFEYKSPEELESAVEEMKRAKEEVLQKEVRVKILKDSIKLVAAKVPSGGQELTSEFNEVLESYQLLCNRIRGKCHTLEEVWSCWVELLHYLDLETTWLNTLEERVRSTEALPERAEAVHEALESLESVLRHPADNRTQIRELGQTLIDGGILDDIISEKLEAFNSRYEELSHLAESKQISLEKQLQVLRETDHMLQVLKESLGELDKQLTTYLTDRIDAFQLPQEAQKIQAEISAHELTLEELRKNVRSQPPTSPEGRATRGGSQMDMLQRKLREVSTKFQLFQKPANFEQRMLDCKRVLEGVKAELHVLDVRDVDPDVIQAHLDKCMKLYKTLSEVKLEVETVIKTGRHIVQKQQTDNPKSMDEQLTSLKVLYNDLGAQVTEGKQDLERASQLSRKMKKEAAVLSEWLSATEAELVQKSTSEGVIGDLDTEISWAKSILKDLEKRKVDLNGITESSAALQHLVLGSESVLEENLCVLNAGWSRVRTWTEDWCNTLLNHQNQLELFDGHVAHISTWLYQAEALLDEIEKKPASKQEEIVKRLLSELDDASLQVENVREQAIILVNARGSASRELVEPKLAELSRNFEKVSQHIKSARMLIGQDPSSYQGLDPAGTVQAAESFSDLENLEQDIENMLKVVEKHLDPNNDEKMDEEQAQIEEVLQRGEHLLHEPMEDSKKEKIRLQLLLLHTRYNKIKTIPIQQRKTIPVSSGITSSALPADYLVEINKILLTLDDIELSLNMPELNTTVYKDFSFQEDSLKSIKGQLDRLGEQIAVVHEKQPDVIVEASGPEAIQIRDMLAQLNAKWDRVNRVYSDRRGSFARAVEEWRQFHHDLDDLTQWLSEAEDLLVDTCAPDGSLDLEKARAQQLELEEGLSSHQPSLIKVNRKGEDLVQRLRPSEASFLKEKLAGFNQRWSTLVAEVEALQPRLKGESQQVLGYKRRLDEVTCWLTKVESAVQKRSTPDPEESPQELTDLAQETEVQAENIKWLNRAELEMLSDKNLSLREREKLSESLRNVNTTWTKVCREVPSLLKTRTQDPCSAPQMRMAAHPNVQKVVLVSSASDAPLRGGLEISVPADLDKTITELADWLVLIDQMLKSNIVTVGDVKEINKTVSRMKITKADLEQRHPQLDCVFTLAQNLKNKASSSDVRTAITEKLEKLKTQWESTQHGVELRRQQLEDMVVDSLQWDDHREETEELMRKYEARFYMLQQARRDPLSKQVSDNQLLLQELGSGDGVIMAFDNVLQKLLEEYSGDDTRNVEETTEYLKTSWVNLKQSIADRQSALEAELQTVQTSRRDLENFVKWLQEAETTANVLADASQRENALQDSVLARQLRQQMLDIQAEIDAHNDIFKSIDGNRQKMVKALGNSEEATMLQHRLDDMNQRWNDLKAKSASIRAHLEASAEKWNRLLASLEELIKWLNMKDEELKKQMPIGGDVPALQLQYDHCKVLRRELKEKEYSVLNAVDQARVFLADQPIEAPEEPRRNPQSKTELTPEERAQKIAKAMRKQSSEVREKWENLNAVTSNWQKQVGKALEKLRDLQGAMDDLDADMKEVEAVRNGWKPVGDLLIDSLQDHIEKTLAFREEIAPINLKVKTMNDLSSQLSPLDLHPSLKMSRQLDDLNMRWKLLQVSVDDRLKQLQEAHRDFGPSSQHFLSTSVQLPWQRSISHNKVPYYINHQTQTTCWDHPKMTELFQSLADLNNVRFSAYRTAIKIRRLQKALCLDLLELNTTNEVFKQHKLNQNDQLLSVPDVINCLTTTYDGLEQLHKDLVNVPLCVDMCLNWLLNVYDTVCWRLGSPKRKRL
IRESfinder result
IRESfinder score
0.400252729
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page