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mmu_circUtrn_359
Basic information of circular RNA
PanCircBase ID:
mmu_circUtrn_359
mm39_Chr. Position ID:
chr10|12585709|12587327|-
Gene name:
Utrn
Transcript:
ENSMUST00000076817.5
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
22,21
Exon/intron offsets:
0,1472
Genomic length:
1618
Exon/intron sizes in nt:
2,13,146
Flanking exon/introns:
chr10:12574859-12585709|chr10:12587327-12588997
Splice length:
359
Other database IDs:
circAtlas: mmu-Utrn_0046
CIRCpedia: HSA_CIRCpedia_373079
Human Ortholog IDs:
Mature spliced Sequence:
AGCTGAAGAGCCAGCCTGGACCCGCGTATTTGGACACACTGAATACCCTGAAAAAAATGCTAAGCGAGTCAGAAAAGGCGGCCCAGGCCTCTCTGAATGCCCTGAACGATCCCATAGCGGTGGAGCAGGCCCTGCAGGAGAAAAAGGCCCTTGATGAAACCCTTGAGAATCAGAAACATACGTTACATAAGCTTTCAGAAGAAACGAAGACTTTGGAGAAAAATATGCTTCCTGATGTGGGGAAAATGTATAAACAAGAATTTGATGATGTCCAAGGCAGATGGAATAAAGTAAAGACCAAGGTTTCCAGAGACTTACACTTGCTCGAGGAAATCACCCCCAGACTCCGAGATTTTGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGATGTCCAAGGCAGATGGA
58.71
CCGCCTTTTCTGACTCGCTT
60.95
175
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACTTGCTCGAGGAAATCACCC
60.34
CATTCAGAGAGGCCTGGGC
60.15
140
PCR template sequence:
ATTTGATGATGTCCAAGGCAGATGGAATAAAGTAAAGACCAAGGTTTCCAGAGACTTACACTTGCTCGAGGAAATCACCCCCAGACTCCGAGATTTTGAGAGCTGAAGAGCCAGCCTGGACCCGCGTATTTGGACACACTGAATACCCTGAAAAAAATGCTAAGCGAGTCAGAAAAGGCGGCCCAGGCCTCTCTGAATGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
CCGAGATTTTGAGAGCTGAAGAGCCA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCUTRN_359_ORF_1
1.1486
0.231875373
0.513491238
309
ORF sequence:
ATGCTAAGCGAGTCAGAAAAGGCGGCCCAGGCCTCTCTGAATGCCCTGAACGATCCCATAGCGGTGGAGCAGGCCCTGCAGGAGAAAAAGGCCCTTGATGAAACCCTTGAGAATCAGAAACATACGTTACATAAGCTTTCAGAAGAAACGAAGACTTTGGAGAAAAATATGCTTCCTGATGTGGGGAAAATGTATAAACAAGAATTTGATGATGTCCAAGGCAGATGGAATAAAGTAAAGACCAAGGTTTCCAGAGACTTACACTTGCTCGAGGAAATCACCCCCAGACTCCGAGATTTTGAGAGCTGA
Peptide sequence:
MLSESEKAAQASLNALNDPIAVEQALQEKKALDETLENQKHTLHKLSEETKTLEKNMLPDVGKMYKQEFDDVQGRWNKVKTKVSRDLHLLEEITPRLRDFES
IRESfinder result
IRESfinder score
0.414672052
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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