top of page
mmu_circUsp37_2674
Basic information of circular RNA
PanCircBase ID:
mmu_circUsp37_2674
mm39_Chr. Position ID:
chr1|74489653|74539259|-
Gene name:
Usp37
Transcript:
ENSMUST00000044260.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
19
Exon/intron indexes:
20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2
Exon/intron offsets:
0,2192,3333,5584,11071,16420,17772,20042,20801,21060,24491,27552,29157,35486,36124,39595,42410,45135,49461
Genomic length:
49606
Exon/intron sizes in nt:
6,11,67,25,61,42,16,58,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr1:74483687-74489653|chr1:74539259-74544818
Splice length:
2674
Other database IDs:
circAtlas: mmu-Usp37_0021
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
CTGAGTTGATGACTGCTGGAGGGACCACTGGTAGAGCCGAAGAATATGAATAGTTTCTCAAGAAAAGTACATTACTTTTGGCACAAGAAGCAGAATAACTGTGAATTGTTATCACGTGGAATTTTTCAGTAAAAATCACTGAAAAAATTCGTCAGGTGAACATATATTTTTGCTTTTTAATTTGGTTAAAAGCAATTTATTTTTAAAGAAACTATGTCTCCCCTGAAGATCTATGGTCCTATCAGAATTCGAAGCATGCAGACTGGGATTACAAAGTGGAAAGAAGGGTCCTTTGAAATTGTGGAAAAAGACAATAGAGTCAGCCTGCTCGTTCACTACAACACTGGAGGAATTCCAAGAGTGTTTCAGCTAAGTCATAACATTAAAAATGTGGTACTACGACCCAGTGGAATAAAACAAAGCCGCCTAATGTTGACTTTACAAGATAACAGCTTCTTGTCTATTGACAAAGTACCAAGTAAGGATGCAGAGGAAATGAGGTTGTTCCTAGATGCCGTCCATCAAAACAGACTTCATGCAGCTATGAAAGCTTCTCAAGGTTCTGGTAGTTTTGGAACTATTCTGGGCAGCAGGACCTCTCAGAAGGAAACTAACAGACAGCTTTCTTACTCAGACAATCAGGCCTCTTCAAAAAGAGGAAGTTTAGAAACTAAAGATGAAATTCCATTTCGAAAAGTTCTTGGCAGTCCTGGTAGAGGACCAATTAAGACTGTAACTGGAGGTGGAATGGCTGTTACCCGGACTATTCCTTCTTTGACGCTGACATCAACACCTCTTAGATCAGGATTATTAGAAAACCGCACTGAAAAGAGGAAAAGAATGTTATCTGGTTCAGAGCTGACTGAAGATTACCCTAAGGAAAATGACTCATCATCGAACAACAAAGCTATGACAGACCCTTCAAGAAAATATTTAACCAGCTGTAGAGAAAAGCAGCTGAGTTTGAAACAGGCAGAAGAAAATCGAACATCAGGGCTTTTACCTCTGCAGTCATCCTCATTCTATGGGAGCAGAGCTGGATCAAAGGACTACTCTTCTGGTGTCACTAACCTGGACAGGTGTAATGTTTCAAGCCAGACTCCTTCTGCCAAAAGAAGCCTGGGGTTTCTTCCTCAGCCAACTCCTCTGTCTGTTAAAAAACTGAGGTGTAACCAGGATTACGCGGGCTGGAACAGACCTAGAGTGCCCCTTTCCTCCCATCAACAGCAGCTGCAGGGATTCTCCAACTTGGGAAATACATGCTATATGAATGCTATCTTACAATCTCTGTTTTCACTCCAGTCATTTGCAAATGATTTGCTTAAACAAAGTATCCCATGGAAGAAAATTCCATTCAATGCACTTATCAGACGCTTTGCAAACCTGCTTATTAAAAAAGATATTTGTAATTCAGAGACCAAAAAAGAACTACTTAAGAAGGTTAAAAATGCTATTTCAGCTACTGCAGAGAGATTCTCTGGCTATGTCCAAAATGATGCTCATGAATTTTTAAGTCAGTGCTTAGATCAGCTAAAGGAGGATATGGAAAAACTGAATAAAACTTGGAAGACAGAACCTGTCCTTGGAGAAGAAAATTTGCCAGATACATCAGCTACCAAAGTGTTCACGTGCCCTGTTATTACAAACTTGGAGTTTGAAGTTCAGCACTCCATTATCTGTAAAGCATGTGGAGAAACTATTCCCAAAAGAGAACAGTTCAATGACCTCTCCATTGACCTTCCTCGGAGGAAAAAGCCACTCCCTCCTCGTTCAATCCAAGATTCTCTCGATCTTTTCTTTAGGGCAGAAGAACTTGAATACTCATGTGAAAAGTGTGGTGGAAAATGTGCTCTTGTCAGGCACAAATTTAACAGGCTGCCCAGGGTCCTCATCCTTCATTTGAAGCGATACAGCTTCAATGTGGCTCTCTCACTTAACAACAAGCTCGGACAGCAAGTCATCATCCCAAGATTCCTGACCCTGGCCTCCCACTGCACTGAGAGCACAAAGCCGCCGGTCACCCTTGGGTGGAGCGCACCCGTGGCAATGAAATTCACCTTCAAATCCAAGAGCTCCGTGACATCATGCCTTGATTCAGACAGTGAGGATGAACTTAAACGCTCTGTGGTCCTCAGTCAGAGACTTTGTGATTTGCCAGGCAATGAACAGTACCAGGAAGATGTGGAAAAAGATTTGAAATTGTGCAGATTAGAGCCTGGGAAGGCAGAACTGGAGAACTCAGGATTTGACAGAATGAGTGAGGAAGAGGTGCTGGCAGCTGTGTTAGAGATAAGCAGGAGAGAAGCTTCGCCGGTACTTAGCCCTGAAGATGATGATAAGCCAACCAGCAGTCCGGACACCGGCTTTGCAGAAGATGATATTCCAGAAATGCCTGAAAATCCAGATGCTATGGAAATTGAGAAGTCCAAAACAATCACTGAGCCAGGTCCTGCTAGTTTTACTGAGATAACAAAAGACTGTGATGAGAATAAAGAAAACAAAACTCCAGAAGGCTCTCAGGGAGAGGTTGATTGGCTCCAGCAGTATGACGTAGACCGGGAAAGAGAAGAGCAGGAGCTGCAGCAAGCACTGGCTCAGAGCCTTCAAGAGCAAGAGGCTTGGGAACAGAAGGAAGATGACGACCTCAAAAGGGCTACAGAATTAAGTCTTCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCTCAGAGCCTTCAAGAGCA
60.04
TCTGCTTCTTGTGCCAAAAGT
58.62
176
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCAAGAGGCTTGGGAACAGA
60.25
TCTGCTTCTTGTGCCAAAAGT
58.62
159
PCR template sequence:
GAGCTGCAGCAAGCACTGGCTCAGAGCCTTCAAGAGCAAGAGGCTTGGGAACAGAAGGAAGATGACGACCTCAAAAGGGCTACAGAATTAAGTCTTCAAGCTGAGTTGATGACTGCTGGAGGGACCACTGGTAGAGCCGAAGAATATGAATAGTTTCTCAAGAAAAGTACATTACTTTTGGCACAAGAAGCAGAATAACT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
22
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-27b-3p(1), mmu-miR-7b-5p(1), mmu-miR-135a-5p(1), mmu-miR-92a-3p(1), mmu-miR-33-5p(1), mmu-miR-298-5p(1), mmu-miR-125b-5p(1), mmu-miR-25-3p(1), mmu-miR-149-5p(1), mmu-miR-351-5p(1), mmu-miR-125a-5p(1), mmu-miR-494-3p(1), mmu-miR-22-3p(1), mmu-miR-194-5p(1), mmu-miR-467b-5p(1), mmu-miR-705(1), mmu-miR-680(1), mmu-miR-670-5p(1), mmu-miR-1904(1), mmu-miR-3105-3p(1), mmu-miR-323-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTAAGTCTTCAAGCTGAGTTGATGAC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCUSP37_2674_ORF_1
0.7667
0.095875786
0.99999954
2514
ORF sequence:
ATGTCTCCCCTGAAGATCTATGGTCCTATCAGAATTCGAAGCATGCAGACTGGGATTACAAAGTGGAAAGAAGGGTCCTTTGAAATTGTGGAAAAAGACAATAGAGTCAGCCTGCTCGTTCACTACAACACTGGAGGAATTCCAAGAGTGTTTCAGCTAAGTCATAACATTAAAAATGTGGTACTACGACCCAGTGGAATAAAACAAAGCCGCCTAATGTTGACTTTACAAGATAACAGCTTCTTGTCTATTGACAAAGTACCAAGTAAGGATGCAGAGGAAATGAGGTTGTTCCTAGATGCCGTCCATCAAAACAGACTTCATGCAGCTATGAAAGCTTCTCAAGGTTCTGGTAGTTTTGGAACTATTCTGGGCAGCAGGACCTCTCAGAAGGAAACTAACAGACAGCTTTCTTACTCAGACAATCAGGCCTCTTCAAAAAGAGGAAGTTTAGAAACTAAAGATGAAATTCCATTTCGAAAAGTTCTTGGCAGTCCTGGTAGAGGACCAATTAAGACTGTAACTGGAGGTGGAATGGCTGTTACCCGGACTATTCCTTCTTTGACGCTGACATCAACACCTCTTAGATCAGGATTATTAGAAAACCGCACTGAAAAGAGGAAAAGAATGTTATCTGGTTCAGAGCTGACTGAAGATTACCCTAAGGAAAATGACTCATCATCGAACAACAAAGCTATGACAGACCCTTCAAGAAAATATTTAACCAGCTGTAGAGAAAAGCAGCTGAGTTTGAAACAGGCAGAAGAAAATCGAACATCAGGGCTTTTACCTCTGCAGTCATCCTCATTCTATGGGAGCAGAGCTGGATCAAAGGACTACTCTTCTGGTGTCACTAACCTGGACAGGTGTAATGTTTCAAGCCAGACTCCTTCTGCCAAAAGAAGCCTGGGGTTTCTTCCTCAGCCAACTCCTCTGTCTGTTAAAAAACTGAGGTGTAACCAGGATTACGCGGGCTGGAACAGACCTAGAGTGCCCCTTTCCTCCCATCAACAGCAGCTGCAGGGATTCTCCAACTTGGGAAATACATGCTATATGAATGCTATCTTACAATCTCTGTTTTCACTCCAGTCATTTGCAAATGATTTGCTTAAACAAAGTATCCCATGGAAGAAAATTCCATTCAATGCACTTATCAGACGCTTTGCAAACCTGCTTATTAAAAAAGATATTTGTAATTCAGAGACCAAAAAAGAACTACTTAAGAAGGTTAAAAATGCTATTTCAGCTACTGCAGAGAGATTCTCTGGCTATGTCCAAAATGATGCTCATGAATTTTTAAGTCAGTGCTTAGATCAGCTAAAGGAGGATATGGAAAAACTGAATAAAACTTGGAAGACAGAACCTGTCCTTGGAGAAGAAAATTTGCCAGATACATCAGCTACCAAAGTGTTCACGTGCCCTGTTATTACAAACTTGGAGTTTGAAGTTCAGCACTCCATTATCTGTAAAGCATGTGGAGAAACTATTCCCAAAAGAGAACAGTTCAATGACCTCTCCATTGACCTTCCTCGGAGGAAAAAGCCACTCCCTCCTCGTTCAATCCAAGATTCTCTCGATCTTTTCTTTAGGGCAGAAGAACTTGAATACTCATGTGAAAAGTGTGGTGGAAAATGTGCTCTTGTCAGGCACAAATTTAACAGGCTGCCCAGGGTCCTCATCCTTCATTTGAAGCGATACAGCTTCAATGTGGCTCTCTCACTTAACAACAAGCTCGGACAGCAAGTCATCATCCCAAGATTCCTGACCCTGGCCTCCCACTGCACTGAGAGCACAAAGCCGCCGGTCACCCTTGGGTGGAGCGCACCCGTGGCAATGAAATTCACCTTCAAATCCAAGAGCTCCGTGACATCATGCCTTGATTCAGACAGTGAGGATGAACTTAAACGCTCTGTGGTCCTCAGTCAGAGACTTTGTGATTTGCCAGGCAATGAACAGTACCAGGAAGATGTGGAAAAAGATTTGAAATTGTGCAGATTAGAGCCTGGGAAGGCAGAACTGGAGAACTCAGGATTTGACAGAATGAGTGAGGAAGAGGTGCTGGCAGCTGTGTTAGAGATAAGCAGGAGAGAAGCTTCGCCGGTACTTAGCCCTGAAGATGATGATAAGCCAACCAGCAGTCCGGACACCGGCTTTGCAGAAGATGATATTCCAGAAATGCCTGAAAATCCAGATGCTATGGAAATTGAGAAGTCCAAAACAATCACTGAGCCAGGTCCTGCTAGTTTTACTGAGATAACAAAAGACTGTGATGAGAATAAAGAAAACAAAACTCCAGAAGGCTCTCAGGGAGAGGTTGATTGGCTCCAGCAGTATGACGTAGACCGGGAAAGAGAAGAGCAGGAGCTGCAGCAAGCACTGGCTCAGAGCCTTCAAGAGCAAGAGGCTTGGGAACAGAAGGAAGATGACGACCTCAAAAGGGCTACAGAATTAAGTCTTCAAGCTGAGTTGATGACTGCTGGAGGGACCACTGGTAGAGCCGAAGAATATGAATAG
Peptide sequence:
MSPLKIYGPIRIRSMQTGITKWKEGSFEIVEKDNRVSLLVHYNTGGIPRVFQLSHNIKNVVLRPSGIKQSRLMLTLQDNSFLSIDKVPSKDAEEMRLFLDAVHQNRLHAAMKASQGSGSFGTILGSRTSQKETNRQLSYSDNQASSKRGSLETKDEIPFRKVLGSPGRGPIKTVTGGGMAVTRTIPSLTLTSTPLRSGLLENRTEKRKRMLSGSELTEDYPKENDSSSNNKAMTDPSRKYLTSCREKQLSLKQAEENRTSGLLPLQSSSFYGSRAGSKDYSSGVTNLDRCNVSSQTPSAKRSLGFLPQPTPLSVKKLRCNQDYAGWNRPRVPLSSHQQQLQGFSNLGNTCYMNAILQSLFSLQSFANDLLKQSIPWKKIPFNALIRRFANLLIKKDICNSETKKELLKKVKNAISATAERFSGYVQNDAHEFLSQCLDQLKEDMEKLNKTWKTEPVLGEENLPDTSATKVFTCPVITNLEFEVQHSIICKACGETIPKREQFNDLSIDLPRRKKPLPPRSIQDSLDLFFRAEELEYSCEKCGGKCALVRHKFNRLPRVLILHLKRYSFNVALSLNNKLGQQVIIPRFLTLASHCTESTKPPVTLGWSAPVAMKFTFKSKSSVTSCLDSDSEDELKRSVVLSQRLCDLPGNEQYQEDVEKDLKLCRLEPGKAELENSGFDRMSEEEVLAAVLEISRREASPVLSPEDDDKPTSSPDTGFAEDDIPEMPENPDAMEIEKSKTITEPGPASFTEITKDCDENKENKTPEGSQGEVDWLQQYDVDREREEQELQQALAQSLQEQEAWEQKEDDDLKRATELSLQAELMTAGGTTGRAEEYE
IRESfinder result
IRESfinder score
0.676342574
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page