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mmu_circUsp34_3558
Basic information of circular RNA
PanCircBase ID:
mmu_circUsp34_3558
mm39_Chr. Position ID:
chr11|23301591|23353895|+
Gene name:
Usp34
Transcript:
ENSMUST00000180046.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
25
Exon/intron indexes:
8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32
Exon/intron offsets:
0,3253,3414,9687,9995,10985,11466,12199,15747,18647,18852,21729,23409,25963,29633,30962,32809,33421,36842,37072,41250,42160,49861,51968,52220
Genomic length:
52304
Exon/intron sizes in nt:
62,82,93,126,130,36,131,722,215,116,128,90,96,83,155,114,100,160,127,148,101,210,126,123,84
Flanking exon/introns:
chr11:23299343-23301591|chr11:23353895-23355866
Splice length:
3558
Other database IDs:
CIRCpedia: MMU_CIRCpedia_13795, circAtlas: mmu-Usp34_0189
Human Ortholog IDs:
Mature spliced Sequence:
AATCAGCTCCATACTTTCAATGATGTGTGCAATAACGAATCATTGGTATCAGACACAGAAACGTCCATTGCAAAAGAACTTGCAGACTGGCTTATTAGCAACAATGTAGTAGAACATATATTTGGACCAAATTTACATATTGAGATTATTAAACAGTGCCAAGTGATTTTGAATTTCTTGGCAGCAGAGGGACGACTGAGTACTCAGCATATTGACTGCATTTGGGCTGCAGCACAGCTGAAGCACTGTAGTCGATATATTCATGACTTATTCCCTTCACTCATCAAGAATCTGGATCCTGTGCCACTTAGACATTTACTTAATCTGGTCTCAGCTCTTGAACCAGGTGTTCATACTGAACAGACACTGTACTTGGCATCCATGTTAATTAAAGCTTTGTGGAATAATGCACTTGCAGCTAAGGCTCAGCTGTCTAAACAGAGTTCTTTTGCATCTTTATTAAACACTAATATGCCCATTGGAAACAAGAAAGAGGAAGAAGAGCTTAGAAGAGCAGCTCCTTCACCTTGGTCCCCAGCAGCGAGTCCTCAAAGTAGTGATAACAGTGACACACATCAGAGTGGAGCCAGTGACATTGAAATGGATGAGCAGCTTATTAATAGAAATAAACATGTGCAGCAGCGACTGTCTGACACTGAGGAATCCATGCAAGGAAGTTCTGATGAAACTGCCAACAGTGGTGAAGATGGAAGCAGTGGCCCTGGTAGCAGTAGTGGGCATAGTGATGGATCTAGCAATGAAGTTAATTCAAGCCATGCAAGCCAGTCTGCTGGGAGCCCTGGAAGTGAGGTGCAATCAGAAGACATTGCAGACATCGAGGCCCTTAAAGAAGAAGAGGAAGAGGAGGAGGAAGAAGAAGAAGAGGAAGAGGAAGAAGATGATGAAGAAGAAGAAGATGAAGAAGAAGATGATGATGACGACGATGATCATGGTCACAATCCTGCCAAAAATACTTGTGGTACAGAACTTCGAAACAGAAAGTTAGAAAATCCAGCAGGCATTTGCTTGGGGGAATCCCAAGGCACATCTGAAAGGAATGGGACAAATAGTGGAACTGGAAAGGACCTGGTTTTTAATACTGAGCCATTGCCATCTGTAGATAACCGAATACGAATGCTAGATGCCTGTGCTCACTCTGAAGACCCAGAACATGGCATTTCAGGGGAAGTGAGTTCTGCTCACTTAGCACAAGGTTCTCAGGAGGCTTGTATCACACGAAGTGGGGACTTCCTTGGGGAGACTATTGGGAATGAGTTGTTTAATTGTCGGCAGTTTATTGGTCCACAGCATCACCACCACCACCACCACCACCACCACCATCATCACCATCACCACCACCACCACCACCACCACCACGATGGACATATGGTTGATGATATGCTAAGTGCAGATGATGTCAGTTGCAGTAGCTCCCAGGTCAGTGCAAAATCAGAAAAAAATATGGCTGATTTTGATGGTGAAGAATCTGGATGTGAAGAGGAACTAGTTCAGATAAATTCACATGCAGAACTAACATCTCATCTCCAACAACATCTTCCCAATTTAGCATCTATTTATCATGAACATCTTAGTCAAGGACCTGCAGTTCATAAACATCAATTCAGTAGTAATGCTGTGACAGATATTAATTTGGATAATGTTTGCAAGAAAGGAAATACTTTATTATGGGATATAGTGCAAGATGATGATGCAATTAATCTTTCTGAAGGATTAATAAATGAAGCAGAGAAACTTCTCTGTTCTTTGGTTTGTTGGTTTACGGATAGACAAATTCGAATGAGATTCATTGAAGGCTGCCTTGAAAATTTAGGGAACAACAGATCAGTGGTGATTTCACTTCGTCTTCTTCCAAAACTGTTTGGTACTTTTCAGCAGTTTGGAAGCAGTTATGATACTCATTGGATTACAATGTGGGCAGAGAAAGAACTGAACATGATGAAGCTTTTCTTTGACAATCTGGTGTATTACATTCAAGGTATAAGGGAAGGCAGACAAAAGCATGCACTGTACAGCCATAGTGCCGAAGTTCAAGTTCGACTTCAGTTCCTGACCTGTGTGTTTTCAACCCTGGGATCCCCTGATCACTTCAGGTTAAGTTTAGAGCAAGTGGACATTTTATGGCATTGTTTGGTAGAAGACTCTGAGTGCTATGATGATGCACTTCATTGGTTTTTAAATCAAGTTCGAAGTAAAGATCAACATGCAATGGGAATGGAAACCTATAAACATCTTTTCCTGGAGAAGATGCCCCAGCTTAAACCTGAAACAATTAGCATGACTGGCTTAAACCTGTTTCAGCATCTTTGTAACTTGGCTCGATTGGCTACCAGTGCCTATGATGGTGGCTCAAACTCTGAGCTGTGTGGTATGGACCAATTTTGGGGTATTGCATTAAGAGCACAATCAGGTGATGTCAGTAGAGCTGCTATTCAGTATATTAACTCCTACTATATTAATGGTAAAACGGGTTTGGAAAAGGAGCAAGAATTTATTAGTAAGTGCATGGAAAGTCTCATGATAGCTTCTAGCAGTCTTGAACAAGAATCACACTCAAGTCTCACAGTTATAGAACGAGGATTGCTTATGCTGAAGACACATCTGGAAGCATTTAGGAGAAGGTTTGCATATCATCTGAGACAGTGGCAGATTGAGGGCACCGGTATTAGCAGTCACTTGAAAGCACTGAGTGACAAACAGTCTTTGCCTCTAAGGGTTGTATGTCAGCCTGCTGGACTTCCCGACAAGATGACTATTGAAATGTATCCAAGTGACCAGGTAGCAGATCTTCGTGCTGAAGTAACTCACTGGTATGAAAACTTACAGAAAGAACAAATAAATCAACAAGCTCAGCTTCAGGAGTTTGGTCAAAGCAGCAGAAAGGGAGAGTTTCCTGGTGGCCTCATGGGGCCTGTCAGGATGATCTCCTCTGGACATGAATTAACAACAGACTATGATGAAAAAGCACTTCATGAACTTGGTTTTAAAGATATGCAGATGGTGTTTGTATCTTTGGGTGCACCAAGAAGAGAAAGAAAAGGAGAAGGGGTTCAACTGCCTGCATCTTGCCTCCCACCACCTCAGAAGGACAACATTCCGATGCTTTTGCTGTTACAAGAACCTCATTTAACTACTCTCTTTGATTTATTAGAAATGCTTGCTTCATTTAAACCACCCTCAGGAAAAGTTGCAGTTGATGACAGTGAGAGTTTAAAATGTGAAGAACTTCATCTTCATGCAGAAAATCTTTCAAGGCGTGTCTGGGAGTTGCTGATGCTTCTTCCGACTTGTCCCAACATGCTGACGGCATTCCAGAATGTCTCAGACGAGCAGAGCAATGATGGACTTAATTGGAAGGAACTTCTCAAAATTAAGAGTGCTCATAAGTTGTTATATGCTCTTGAGATTATTGAAGCACTAGGAAAACCTAACAGAAGAATAAGAAGAGAGTCAACGGGAAGTTACAGTGATCTTTATCCAGATTCTGATGATTCAAGTGAAGATCAAGTGGAAAACAGTAAAAATTCCTGGACTTGCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGAAGAGAGTCAACGGGAAGT
58.4
TGCAATGGACGTTTCTGTGTC
59.4
171
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGAAGAGAGTCAACGGGAAGT
58.4
TGCAATGGACGTTTCTGTGT
58.33
171
PCR template sequence:
AAGAAGAGAGTCAACGGGAAGTTACAGTGATCTTTATCCAGATTCTGATGATTCAAGTGAAGATCAAGTGGAAAACAGTAAAAATTCCTGGACTTGCAAGAATCAGCTCCATACTTTCAATGATGTGTGCAATAACGAATCATTGGTATCAGACACAGAAACGTCCATTGCAAAAGAACTTGCAGACTGGCTTATTAGCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
28
Interacting miRNAs (#binding sites)
mmu-miR-32-5p(2), mmu-miR-207(2), mmu-miR-1904(2), mmu-miR-134-5p(1), mmu-miR-221-3p(1), mmu-miR-31-5p(1), mmu-miR-92a-3p(1), mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-29a-3p(1), mmu-miR-335-5p(1), mmu-miR-152-3p(1), mmu-miR-25-3p(1), mmu-miR-139-5p(1), mmu-miR-214-3p(1), mmu-miR-24-3p(1), mmu-miR-149-5p(1), mmu-miR-363-3p(1), mmu-miR-22-3p(1), mmu-miR-194-5p(1), mmu-miR-758-3p(1), mmu-miR-705(1), mmu-miR-466a-5p(1), mmu-miR-466p-5p(1), mmu-miR-410-3p(1), mmu-miR-344d-3p(1), mmu-miR-335-3p(1), mmu-miR-532-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CTGGACTTGCAAGAATCAGCTCCATA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCUSP34_3558_ORF_1
1.0475
0.044609012
1
6735
ORF sequence:
ATGTTAATTAAAGCTTTGTGGAATAATGCACTTGCAGCTAAGGCTCAGCTGTCTAAACAGAGTTCTTTTGCATCTTTATTAAACACTAATATGCCCATTGGAAACAAGAAAGAGGAAGAAGAGCTTAGAAGAGCAGCTCCTTCACCTTGGTCCCCAGCAGCGAGTCCTCAAAGTAGTGATAACAGTGACACACATCAGAGTGGAGCCAGTGACATTGAAATGGATGAGCAGCTTATTAATAGAAATAAACATGTGCAGCAGCGACTGTCTGACACTGAGGAATCCATGCAAGGAAGTTCTGATGAAACTGCCAACAGTGGTGAAGATGGAAGCAGTGGCCCTGGTAGCAGTAGTGGGCATAGTGATGGATCTAGCAATGAAGTTAATTCAAGCCATGCAAGCCAGTCTGCTGGGAGCCCTGGAAGTGAGGTGCAATCAGAAGACATTGCAGACATCGAGGCCCTTAAAGAAGAAGAGGAAGAGGAGGAGGAAGAAGAAGAAGAGGAAGAGGAAGAAGATGATGAAGAAGAAGAAGATGAAGAAGAAGATGATGATGACGACGATGATCATGGTCACAATCCTGCCAAAAATACTTGTGGTACAGAACTTCGAAACAGAAAGTTAGAAAATCCAGCAGGCATTTGCTTGGGGGAATCCCAAGGCACATCTGAAAGGAATGGGACAAATAGTGGAACTGGAAAGGACCTGGTTTTTAATACTGAGCCATTGCCATCTGTAGATAACCGAATACGAATGCTAGATGCCTGTGCTCACTCTGAAGACCCAGAACATGGCATTTCAGGGGAAGTGAGTTCTGCTCACTTAGCACAAGGTTCTCAGGAGGCTTGTATCACACGAAGTGGGGACTTCCTTGGGGAGACTATTGGGAATGAGTTGTTTAATTGTCGGCAGTTTATTGGTCCACAGCATCACCACCACCACCACCACCACCACCACCATCATCACCATCACCACCACCACCACCACCACCACCACGATGGACATATGGTTGATGATATGCTAAGTGCAGATGATGTCAGTTGCAGTAGCTCCCAGGTCAGTGCAAAATCAGAAAAAAATATGGCTGATTTTGATGGTGAAGAATCTGGATGTGAAGAGGAACTAGTTCAGATAAATTCACATGCAGAACTAACATCTCATCTCCAACAACATCTTCCCAATTTAGCATCTATTTATCATGAACATCTTAGTCAAGGACCTGCAGTTCATAAACATCAATTCAGTAGTAATGCTGTGACAGATATTAATTTGGATAATGTTTGCAAGAAAGGAAATACTTTATTATGGGATATAGTGCAAGATGATGATGCAATTAATCTTTCTGAAGGATTAATAAATGAAGCAGAGAAACTTCTCTGTTCTTTGGTTTGTTGGTTTACGGATAGACAAATTCGAATGAGATTCATTGAAGGCTGCCTTGAAAATTTAGGGAACAACAGATCAGTGGTGATTTCACTTCGTCTTCTTCCAAAACTGTTTGGTACTTTTCAGCAGTTTGGAAGCAGTTATGATACTCATTGGATTACAATGTGGGCAGAGAAAGAACTGAACATGATGAAGCTTTTCTTTGACAATCTGGTGTATTACATTCAAGGTATAAGGGAAGGCAGACAAAAGCATGCACTGTACAGCCATAGTGCCGAAGTTCAAGTTCGACTTCAGTTCCTGACCTGTGTGTTTTCAACCCTGGGATCCCCTGATCACTTCAGGTTAAGTTTAGAGCAAGTGGACATTTTATGGCATTGTTTGGTAGAAGACTCTGAGTGCTATGATGATGCACTTCATTGGTTTTTAAATCAAGTTCGAAGTAAAGATCAACATGCAATGGGAATGGAAACCTATAAACATCTTTTCCTGGAGAAGATGCCCCAGCTTAAACCTGAAACAATTAGCATGACTGGCTTAAACCTGTTTCAGCATCTTTGTAACTTGGCTCGATTGGCTACCAGTGCCTATGATGGTGGCTCAAACTCTGAGCTGTGTGGTATGGACCAATTTTGGGGTATTGCATTAAGAGCACAATCAGGTGATGTCAGTAGAGCTGCTATTCAGTATATTAACTCCTACTATATTAATGGTAAAACGGGTTTGGAAAAGGAGCAAGAATTTATTAGTAAGTGCATGGAAAGTCTCATGATAGCTTCTAGCAGTCTTGAACAAGAATCACACTCAAGTCTCACAGTTATAGAACGAGGATTGCTTATGCTGAAGACACATCTGGAAGCATTTAGGAGAAGGTTTGCATATCATCTGAGACAGTGGCAGATTGAGGGCACCGGTATTAGCAGTCACTTGAAAGCACTGAGTGACAAACAGTCTTTGCCTCTAAGGGTTGTATGTCAGCCTGCTGGACTTCCCGACAAGATGACTATTGAAATGTATCCAAGTGACCAGGTAGCAGATCTTCGTGCTGAAGTAACTCACTGGTATGAAAACTTACAGAAAGAACAAATAAATCAACAAGCTCAGCTTCAGGAGTTTGGTCAAAGCAGCAGAAAGGGAGAGTTTCCTGGTGGCCTCATGGGGCCTGTCAGGATGATCTCCTCTGGACATGAATTAACAACAGACTATGATGAAAAAGCACTTCATGAACTTGGTTTTAAAGATATGCAGATGGTGTTTGTATCTTTGGGTGCACCAAGAAGAGAAAGAAAAGGAGAAGGGGTTCAACTGCCTGCATCTTGCCTCCCACCACCTCAGAAGGACAACATTCCGATGCTTTTGCTGTTACAAGAACCTCATTTAACTACTCTCTTTGATTTATTAGAAATGCTTGCTTCATTTAAACCACCCTCAGGAAAAGTTGCAGTTGATGACAGTGAGAGTTTAAAATGTGAAGAACTTCATCTTCATGCAGAAAATCTTTCAAGGCGTGTCTGGGAGTTGCTGATGCTTCTTCCGACTTGTCCCAACATGCTGACGGCATTCCAGAATGTCTCAGACGAGCAGAGCAATGATGGACTTAATTGGAAGGAACTTCTCAAAATTAAGAGTGCTCATAAGTTGTTATATGCTCTTGAGATTATTGAAGCACTAGGAAAACCTAACAGAAGAATAAGAAGAGAGTCAACGGGAAGTTACAGTGATCTTTATCCAGATTCTGATGATTCAAGTGAAGATCAAGTGGAAAACAGTAAAAATTCCTGGACTTGCAAGAATCAGCTCCATACTTTCAATGATGTGTGCAATAACGAATCATTGGTATCAGACACAGAAACGTCCATTGCAAAAGAACTTGCAGACTGGCTTATTAGCAACAATGTAGTAGAACATATATTTGGACCAAATTTACATATTGAGATTATTAAACAGTGCCAAGTGATTTTGAATTTCTTGGCAGCAGAGGGACGACTGAGTACTCAGCATATTGACTGCATTTGGGCTGCAGCACAGCTGAAGCACTGTAGTCGATATATTCATGACTTATTCCCTTCACTCATCAAGAATCTGGATCCTGTGCCACTTAGACATTTACTTAATCTGGTCTCAGCTCTTGAACCAGGTGTTCATACTGAACAGACACTGTACTTGGCATCCATGTTAATTAAAGCTTTGTGGAATAATGCACTTGCAGCTAAGGCTCAGCTGTCTAAACAGAGTTCTTTTGCATCTTTATTAAACACTAATATGCCCATTGGAAACAAGAAAGAGGAAGAAGAGCTTAGAAGAGCAGCTCCTTCACCTTGGTCCCCAGCAGCGAGTCCTCAAAGTAGTGATAACAGTGACACACATCAGAGTGGAGCCAGTGACATTGAAATGGATGAGCAGCTTATTAATAGAAATAAACATGTGCAGCAGCGACTGTCTGACACTGAGGAATCCATGCAAGGAAGTTCTGATGAAACTGCCAACAGTGGTGAAGATGGAAGCAGTGGCCCTGGTAGCAGTAGTGGGCATAGTGATGGATCTAGCAATGAAGTTAATTCAAGCCATGCAAGCCAGTCTGCTGGGAGCCCTGGAAGTGAGGTGCAATCAGAAGACATTGCAGACATCGAGGCCCTTAAAGAAGAAGAGGAAGAGGAGGAGGAAGAAGAAGAAGAGGAAGAGGAAGAAGATGATGAAGAAGAAGAAGATGAAGAAGAAGATGATGATGACGACGATGATCATGGTCACAATCCTGCCAAAAATACTTGTGGTACAGAACTTCGAAACAGAAAGTTAGAAAATCCAGCAGGCATTTGCTTGGGGGAATCCCAAGGCACATCTGAAAGGAATGGGACAAATAGTGGAACTGGAAAGGACCTGGTTTTTAATACTGAGCCATTGCCATCTGTAGATAACCGAATACGAATGCTAGATGCCTGTGCTCACTCTGAAGACCCAGAACATGGCATTTCAGGGGAAGTGAGTTCTGCTCACTTAGCACAAGGTTCTCAGGAGGCTTGTATCACACGAAGTGGGGACTTCCTTGGGGAGACTATTGGGAATGAGTTGTTTAATTGTCGGCAGTTTATTGGTCCACAGCATCACCACCACCACCACCACCACCACCACCATCATCACCATCACCACCACCACCACCACCACCACCACGATGGACATATGGTTGATGATATGCTAAGTGCAGATGATGTCAGTTGCAGTAGCTCCCAGGTCAGTGCAAAATCAGAAAAAAATATGGCTGATTTTGATGGTGAAGAATCTGGATGTGAAGAGGAACTAGTTCAGATAAATTCACATGCAGAACTAACATCTCATCTCCAACAACATCTTCCCAATTTAGCATCTATTTATCATGAACATCTTAGTCAAGGACCTGCAGTTCATAAACATCAATTCAGTAGTAATGCTGTGACAGATATTAATTTGGATAATGTTTGCAAGAAAGGAAATACTTTATTATGGGATATAGTGCAAGATGATGATGCAATTAATCTTTCTGAAGGATTAATAAATGAAGCAGAGAAACTTCTCTGTTCTTTGGTTTGTTGGTTTACGGATAGACAAATTCGAATGAGATTCATTGAAGGCTGCCTTGAAAATTTAGGGAACAACAGATCAGTGGTGATTTCACTTCGTCTTCTTCCAAAACTGTTTGGTACTTTTCAGCAGTTTGGAAGCAGTTATGATACTCATTGGATTACAATGTGGGCAGAGAAAGAACTGAACATGATGAAGCTTTTCTTTGACAATCTGGTGTATTACATTCAAGGTATAAGGGAAGGCAGACAAAAGCATGCACTGTACAGCCATAGTGCCGAAGTTCAAGTTCGACTTCAGTTCCTGACCTGTGTGTTTTCAACCCTGGGATCCCCTGATCACTTCAGGTTAAGTTTAGAGCAAGTGGACATTTTATGGCATTGTTTGGTAGAAGACTCTGAGTGCTATGATGATGCACTTCATTGGTTTTTAAATCAAGTTCGAAGTAAAGATCAACATGCAATGGGAATGGAAACCTATAAACATCTTTTCCTGGAGAAGATGCCCCAGCTTAAACCTGAAACAATTAGCATGACTGGCTTAAACCTGTTTCAGCATCTTTGTAACTTGGCTCGATTGGCTACCAGTGCCTATGATGGTGGCTCAAACTCTGAGCTGTGTGGTATGGACCAATTTTGGGGTATTGCATTAAGAGCACAATCAGGTGATGTCAGTAGAGCTGCTATTCAGTATATTAACTCCTACTATATTAATGGTAAAACGGGTTTGGAAAAGGAGCAAGAATTTATTAGTAAGTGCATGGAAAGTCTCATGATAGCTTCTAGCAGTCTTGAACAAGAATCACACTCAAGTCTCACAGTTATAGAACGAGGATTGCTTATGCTGAAGACACATCTGGAAGCATTTAGGAGAAGGTTTGCATATCATCTGAGACAGTGGCAGATTGAGGGCACCGGTATTAGCAGTCACTTGAAAGCACTGAGTGACAAACAGTCTTTGCCTCTAAGGGTTGTATGTCAGCCTGCTGGACTTCCCGACAAGATGACTATTGAAATGTATCCAAGTGACCAGGTAGCAGATCTTCGTGCTGAAGTAACTCACTGGTATGAAAACTTACAGAAAGAACAAATAAATCAACAAGCTCAGCTTCAGGAGTTTGGTCAAAGCAGCAGAAAGGGAGAGTTTCCTGGTGGCCTCATGGGGCCTGTCAGGATGATCTCCTCTGGACATGAATTAACAACAGACTATGATGAAAAAGCACTTCATGAACTTGGTTTTAAAGATATGCAGATGGTGTTTGTATCTTTGGGTGCACCAAGAAGAGAAAGAAAAGGAGAAGGGGTTCAACTGCCTGCATCTTGCCTCCCACCACCTCAGAAGGACAACATTCCGATGCTTTTGCTGTTACAAGAACCTCATTTAACTACTCTCTTTGATTTATTAGAAATGCTTGCTTCATTTAAACCACCCTCAGGAAAAGTTGCAGTTGATGACAGTGAGAGTTTAAAATGTGAAGAACTTCATCTTCATGCAGAAAATCTTTCAAGGCGTGTCTGGGAGTTGCTGATGCTTCTTCCGACTTGTCCCAACATGCTGACGGCATTCCAGAATGTCTCAGACGAGCAGAGCAATGATGGACTTAATTGGAAGGAACTTCTCAAAATTAAGAGTGCTCATAAGTTGTTATATGCTCTTGAGATTATTGAAGCACTAGGAAAACCTAACAGAAGAATAAGAAGAGAGTCAACGGGAAGTTACAGTGATCTTTATCCAGATTCTGATGATTCAAGTGAAGATCAAGTGGAAAACAGTAAAAATTCCTGGACTTGCAAG
Peptide sequence:
MLIKALWNNALAAKAQLSKQSSFASLLNTNMPIGNKKEEEELRRAAPSPWSPAASPQSSDNSDTHQSGASDIEMDEQLINRNKHVQQRLSDTEESMQGSSDETANSGEDGSSGPGSSSGHSDGSSNEVNSSHASQSAGSPGSEVQSEDIADIEALKEEEEEEEEEEEEEEEEDDEEEEDEEEDDDDDDDHGHNPAKNTCGTELRNRKLENPAGICLGESQGTSERNGTNSGTGKDLVFNTEPLPSVDNRIRMLDACAHSEDPEHGISGEVSSAHLAQGSQEACITRSGDFLGETIGNELFNCRQFIGPQHHHHHHHHHHHHHHHHHHHHHHHDGHMVDDMLSADDVSCSSSQVSAKSEKNMADFDGEESGCEEELVQINSHAELTSHLQQHLPNLASIYHEHLSQGPAVHKHQFSSNAVTDINLDNVCKKGNTLLWDIVQDDDAINLSEGLINEAEKLLCSLVCWFTDRQIRMRFIEGCLENLGNNRSVVISLRLLPKLFGTFQQFGSSYDTHWITMWAEKELNMMKLFFDNLVYYIQGIREGRQKHALYSHSAEVQVRLQFLTCVFSTLGSPDHFRLSLEQVDILWHCLVEDSECYDDALHWFLNQVRSKDQHAMGMETYKHLFLEKMPQLKPETISMTGLNLFQHLCNLARLATSAYDGGSNSELCGMDQFWGIALRAQSGDVSRAAIQYINSYYINGKTGLEKEQEFISKCMESLMIASSSLEQESHSSLTVIERGLLMLKTHLEAFRRRFAYHLRQWQIEGTGISSHLKALSDKQSLPLRVVCQPAGLPDKMTIEMYPSDQVADLRAEVTHWYENLQKEQINQQAQLQEFGQSSRKGEFPGGLMGPVRMISSGHELTTDYDEKALHELGFKDMQMVFVSLGAPRRERKGEGVQLPASCLPPPQKDNIPMLLLLQEPHLTTLFDLLEMLASFKPPSGKVAVDDSESLKCEELHLHAENLSRRVWELLMLLPTCPNMLTAFQNVSDEQSNDGLNWKELLKIKSAHKLLYALEIIEALGKPNRRIRRESTGSYSDLYPDSDDSSEDQVENSKNSWTCKNQLHTFNDVCNNESLVSDTETSIAKELADWLISNNVVEHIFGPNLHIEIIKQCQVILNFLAAEGRLSTQHIDCIWAAAQLKHCSRYIHDLFPSLIKNLDPVPLRHLLNLVSALEPGVHTEQTLYLASMLIKALWNNALAAKAQLSKQSSFASLLNTNMPIGNKKEEEELRRAAPSPWSPAASPQSSDNSDTHQSGASDIEMDEQLINRNKHVQQRLSDTEESMQGSSDETANSGEDGSSGPGSSSGHSDGSSNEVNSSHASQSAGSPGSEVQSEDIADIEALKEEEEEEEEEEEEEEEEDDEEEEDEEEDDDDDDDHGHNPAKNTCGTELRNRKLENPAGICLGESQGTSERNGTNSGTGKDLVFNTEPLPSVDNRIRMLDACAHSEDPEHGISGEVSSAHLAQGSQEACITRSGDFLGETIGNELFNCRQFIGPQHHHHHHHHHHHHHHHHHHHHHHHDGHMVDDMLSADDVSCSSSQVSAKSEKNMADFDGEESGCEEELVQINSHAELTSHLQQHLPNLASIYHEHLSQGPAVHKHQFSSNAVTDINLDNVCKKGNTLLWDIVQDDDAINLSEGLINEAEKLLCSLVCWFTDRQIRMRFIEGCLENLGNNRSVVISLRLLPKLFGTFQQFGSSYDTHWITMWAEKELNMMKLFFDNLVYYIQGIREGRQKHALYSHSAEVQVRLQFLTCVFSTLGSPDHFRLSLEQVDILWHCLVEDSECYDDALHWFLNQVRSKDQHAMGMETYKHLFLEKMPQLKPETISMTGLNLFQHLCNLARLATSAYDGGSNSELCGMDQFWGIALRAQSGDVSRAAIQYINSYYINGKTGLEKEQEFISKCMESLMIASSSLEQESHSSLTVIERGLLMLKTHLEAFRRRFAYHLRQWQIEGTGISSHLKALSDKQSLPLRVVCQPAGLPDKMTIEMYPSDQVADLRAEVTHWYENLQKEQINQQAQLQEFGQSSRKGEFPGGLMGPVRMISSGHELTTDYDEKALHELGFKDMQMVFVSLGAPRRERKGEGVQLPASCLPPPQKDNIPMLLLLQEPHLTTLFDLLEMLASFKPPSGKVAVDDSESLKCEELHLHAENLSRRVWELLMLLPTCPNMLTAFQNVSDEQSNDGLNWKELLKIKSAHKLLYALEIIEALGKPNRRIRRESTGSYSDLYPDSDDSSEDQVENSKNSWTCK
IRESfinder result
IRESfinder score
0.701138275
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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