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mmu_circUsp24_2310
Basic information of circular RNA
PanCircBase ID:
mmu_circUsp24_2310
mm39_Chr. Position ID:
chr4|106219534|106245115|+
Gene name:
Usp24
Transcript:
ENSMUST00000165709.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
20
Exon/intron indexes:
15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34
Exon/intron offsets:
0,350,5689,6385,7731,8646,10350,11321,11653,13309,14991,15171,16701,16891,17731,18090,19897,23085,25141,25352
Genomic length:
25581
Exon/intron sizes in nt:
16,24,81,08,15,01,32,10,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr4:106219449-106219534|chr4:106245115-106245697
Splice length:
2310
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGTTAGATGTCCTCTGGGAGCTGGCTCACCTTCCCACCTTGCCCAGCAGCCTCATTCAGCAGGCCTTGGAGGAGCACCTCACCATCCTCAGTGACGCGTACGCAGTGAAGGAGGCGGTCAAGAGGAGCTACATCATTAAATGCATAGAAGACATTAAAAGGCCTGGAGAATGGTCGAGTTTGGAGAAAAACAAGAAAGATGGATTTAAGTCATCTCAACTTAATAATCCGCAGTTTGTGTGGGTGGTTCCAGCTTTACGTCAGCTTCATGAAATCACTCGTTCATTTATAAAACAAACCTATCAAAAGCAAGACAAGAGCATTATTCAAGACCTGAAGAAAAATTTTGAAATAGTCAAACTGGTAACGGGAAGCTTACTGGCTTGTCACCGACTTGCAGCAGCCGTGGCTGGGCCTGGAGGCTTAACCGGCTTAACATTGGTGGATGGCCGCTATACTTACCGGGAGTATTTAGAGGCACATCTGAAATTTCTGGCATTTTTCTTACAAGAAGCTACACTGTATCTTGGGTGGAACCGAGCCAAAGAAATTTGGGAGTGCCTTGTGACTGGCCAGGACGTCTGCGAGCTAGATAGAGAGATGTGCTTTGAGTGGTTTACAAAGGGGCAGCATGACCTGGAGAGTGACGTCCAGCAGCAGCTCTTCAAGGAGAAGATTCTGAAATTGGAGTCATATGAAATCACTATGAATGGTTTCAACTTATTTAAGACTTTTTTTGAAAATGTGAATCTCTGTGATCATCGGTTGAAAAGACAAGGAGCTCAGTTGTATGTAGAAAAGTTGGAGTTGGTAGGAATGGATTTCATTTGGAAAATTGCCATGGAATCACCTGATGAAGAAATTGCTAATGAAGCTATTCAATTAATCATAAACTACAGTTACATTAATCTAAACCCTAGGTTAAAGAAGGACTCAGTGTCTTTACATAAGAAATTCATTGCTGACTGCTATACAAGACTAGAAGCAGCCAGTTCAGCACTCGGTGGCCCCACTCTAACACATGCTGTGACCCGAGCAACCAAAATGCTCACTGCAACTGCCATGCCAACTGTAGCAACATCAGTTCAGTCTCCATATAGATCAACAAAACTTGTGATAATCGAGAGACTGCTGCTTCTGGCGGAGCGCTACGTGATCACAATAGAGGACTTCTACTCTGTCCCACGAACTATTCTACCTCATGGTGCCTCATTTCATGGACATCTTTTAACTCTTAATGTTACCTACGAGTCTACCAAAGATACCTTCACTGTAGAGGCTCACAGTAATGAGACGATAGGCAGCGTCCGCTGGAAGATAGCCAAACAGCTGTGCTCTCCTGTGGACAACATACAGATATTTACGAACGATAGTCTGCTGACTGTAAATAAAGATCAAAAGCTCCTCCACCAACTGGGGTTCTCTGATGAACAAGTTCTTACCGTGAAGACTTCTGGCAGTGGGACCCCCTCGGGGAGCTCTGCAGATTCCTCCACCAGCTCCAGCAGCAGCAGCAGTGGGGCCTTCAGTTCGTCCTACGCCATGGAACAGGAGAAATCTCTCCCTGGTGTGGTGATGGCACTTGTATGTAATGTGTTTGACATGCTGTACCAACTTGCCAACCTGGAGGAGCCAAGGATAACTCTACGAGTGCGGAAGCTTCTGCTCTTGATACCCACTGACCCAGCCATTCAGGAAGCCCTTGACCAGCTGGATTCTTTAGGCAGAAAGAAAACTTTGCTCTCTGAAACAAGCTCCCAGTCTTCAAAGTCTCCTTCGCTTTCGTCAAAGCAGCAGCATCAGCCAAGTGCCAGCTCCATCTTGGAAAGTTTGTTTCGATCTTTTGCTCCTGGCATGTCAACCTTCAGAGTGCTCTACAACTTGGAAGTCCTAAGCTCCAAACTCATGCCCACGGCTGATGACGACATGGCAAGAAGCTGCGCAAAGTCCTTCTGTGAGAACTTCCTCAAAGCTGGAGGCTTGAGTTTGGTTGTAAATGTCATGCAGAGAGATTCCATCCCATCAGAGGTGGACTATGAGACAAGGCAGGGTGTTTATTCTATCTGTCTACAACTTGCAAGGTTTTTACTTGTTGGACAGACAATGCCAACATCATTAGATGAAGACCTCACCAAAGATGGCATAGAAGCACTTTCTTCCCGTCCATTCCGAAATGTCAGCCGGCAGACGAGCAGACAGATGTCCCTATGTGGGACCCCAGAGAAGTCGTCCTACAGACAGCTGTCAGTGTCAGACAGGTCTTCCATTAGGGTTGAGGAAATCATTCCCGCTGCTCGAGTTGCAATACAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GACCCCAGAGAAGTCGTCCT
60.61
TCCAAGGCCTGCTGAATGAG
60.03
168
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GACCCCAGAGAAGTCGTCCT
60.61
CTCCAAGGCCTGCTGAATGA
60.03
169
PCR template sequence:
TGGGACCCCAGAGAAGTCGTCCTACAGACAGCTGTCAGTGTCAGACAGGTCTTCCATTAGGGTTGAGGAAATCATTCCCGCTGCTCGAGTTGCAATACAAGTGTTAGATGTCCTCTGGGAGCTGGCTCACCTTCCCACCTTGCCCAGCAGCCTCATTCAGCAGGCCTTGGAGGAGCACCTCACCATCCTCAGTGACGCGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
32
Interacting miRNAs (#binding sites)
mmu-miR-23b-3p(1), mmu-miR-20b-5p(1), mmu-let-7a-5p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-7b-5p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-let-7c-5p(1), mmu-miR-322-5p(1), mmu-miR-106b-5p(1), mmu-miR-7a-5p(1), mmu-miR-23a-3p(1), mmu-miR-138-5p(1), mmu-miR-139-5p(1), mmu-miR-381-3p(1), mmu-let-7d-5p(1), mmu-miR-503-5p(1), mmu-miR-127-5p(1), mmu-miR-182-5p(1), mmu-miR-382-5p(1), mmu-miR-370-3p(1), mmu-miR-362-5p(1), mmu-miR-324-3p(1), mmu-miR-297a-5p(1), mmu-miR-98-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-188-3p(1), mmu-miR-466b-3p(1), mmu-miR-7a-2-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AGTTGCAATACAAGTGTTAGATGTCC
siRNA sets
ATCTAACACTTGTATTGCA, CATCTAACACTTGTATTGC, TAACACTTGTATTGCAACT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCUSP24_2310_ORF_1
0.7868
0.145237268
1
4020
ORF sequence:
ATGTGCTTTGAGTGGTTTACAAAGGGGCAGCATGACCTGGAGAGTGACGTCCAGCAGCAGCTCTTCAAGGAGAAGATTCTGAAATTGGAGTCATATGAAATCACTATGAATGGTTTCAACTTATTTAAGACTTTTTTTGAAAATGTGAATCTCTGTGATCATCGGTTGAAAAGACAAGGAGCTCAGTTGTATGTAGAAAAGTTGGAGTTGGTAGGAATGGATTTCATTTGGAAAATTGCCATGGAATCACCTGATGAAGAAATTGCTAATGAAGCTATTCAATTAATCATAAACTACAGTTACATTAATCTAAACCCTAGGTTAAAGAAGGACTCAGTGTCTTTACATAAGAAATTCATTGCTGACTGCTATACAAGACTAGAAGCAGCCAGTTCAGCACTCGGTGGCCCCACTCTAACACATGCTGTGACCCGAGCAACCAAAATGCTCACTGCAACTGCCATGCCAACTGTAGCAACATCAGTTCAGTCTCCATATAGATCAACAAAACTTGTGATAATCGAGAGACTGCTGCTTCTGGCGGAGCGCTACGTGATCACAATAGAGGACTTCTACTCTGTCCCACGAACTATTCTACCTCATGGTGCCTCATTTCATGGACATCTTTTAACTCTTAATGTTACCTACGAGTCTACCAAAGATACCTTCACTGTAGAGGCTCACAGTAATGAGACGATAGGCAGCGTCCGCTGGAAGATAGCCAAACAGCTGTGCTCTCCTGTGGACAACATACAGATATTTACGAACGATAGTCTGCTGACTGTAAATAAAGATCAAAAGCTCCTCCACCAACTGGGGTTCTCTGATGAACAAGTTCTTACCGTGAAGACTTCTGGCAGTGGGACCCCCTCGGGGAGCTCTGCAGATTCCTCCACCAGCTCCAGCAGCAGCAGCAGTGGGGCCTTCAGTTCGTCCTACGCCATGGAACAGGAGAAATCTCTCCCTGGTGTGGTGATGGCACTTGTATGTAATGTGTTTGACATGCTGTACCAACTTGCCAACCTGGAGGAGCCAAGGATAACTCTACGAGTGCGGAAGCTTCTGCTCTTGATACCCACTGACCCAGCCATTCAGGAAGCCCTTGACCAGCTGGATTCTTTAGGCAGAAAGAAAACTTTGCTCTCTGAAACAAGCTCCCAGTCTTCAAAGTCTCCTTCGCTTTCGTCAAAGCAGCAGCATCAGCCAAGTGCCAGCTCCATCTTGGAAAGTTTGTTTCGATCTTTTGCTCCTGGCATGTCAACCTTCAGAGTGCTCTACAACTTGGAAGTCCTAAGCTCCAAACTCATGCCCACGGCTGATGACGACATGGCAAGAAGCTGCGCAAAGTCCTTCTGTGAGAACTTCCTCAAAGCTGGAGGCTTGAGTTTGGTTGTAAATGTCATGCAGAGAGATTCCATCCCATCAGAGGTGGACTATGAGACAAGGCAGGGTGTTTATTCTATCTGTCTACAACTTGCAAGGTTTTTACTTGTTGGACAGACAATGCCAACATCATTAGATGAAGACCTCACCAAAGATGGCATAGAAGCACTTTCTTCCCGTCCATTCCGAAATGTCAGCCGGCAGACGAGCAGACAGATGTCCCTATGTGGGACCCCAGAGAAGTCGTCCTACAGACAGCTGTCAGTGTCAGACAGGTCTTCCATTAGGGTTGAGGAAATCATTCCCGCTGCTCGAGTTGCAATACAAGTGTTAGATGTCCTCTGGGAGCTGGCTCACCTTCCCACCTTGCCCAGCAGCCTCATTCAGCAGGCCTTGGAGGAGCACCTCACCATCCTCAGTGACGCGTACGCAGTGAAGGAGGCGGTCAAGAGGAGCTACATCATTAAATGCATAGAAGACATTAAAAGGCCTGGAGAATGGTCGAGTTTGGAGAAAAACAAGAAAGATGGATTTAAGTCATCTCAACTTAATAATCCGCAGTTTGTGTGGGTGGTTCCAGCTTTACGTCAGCTTCATGAAATCACTCGTTCATTTATAAAACAAACCTATCAAAAGCAAGACAAGAGCATTATTCAAGACCTGAAGAAAAATTTTGAAATAGTCAAACTGGTAACGGGAAGCTTACTGGCTTGTCACCGACTTGCAGCAGCCGTGGCTGGGCCTGGAGGCTTAACCGGCTTAACATTGGTGGATGGCCGCTATACTTACCGGGAGTATTTAGAGGCACATCTGAAATTTCTGGCATTTTTCTTACAAGAAGCTACACTGTATCTTGGGTGGAACCGAGCCAAAGAAATTTGGGAGTGCCTTGTGACTGGCCAGGACGTCTGCGAGCTAGATAGAGAGATGTGCTTTGAGTGGTTTACAAAGGGGCAGCATGACCTGGAGAGTGACGTCCAGCAGCAGCTCTTCAAGGAGAAGATTCTGAAATTGGAGTCATATGAAATCACTATGAATGGTTTCAACTTATTTAAGACTTTTTTTGAAAATGTGAATCTCTGTGATCATCGGTTGAAAAGACAAGGAGCTCAGTTGTATGTAGAAAAGTTGGAGTTGGTAGGAATGGATTTCATTTGGAAAATTGCCATGGAATCACCTGATGAAGAAATTGCTAATGAAGCTATTCAATTAATCATAAACTACAGTTACATTAATCTAAACCCTAGGTTAAAGAAGGACTCAGTGTCTTTACATAAGAAATTCATTGCTGACTGCTATACAAGACTAGAAGCAGCCAGTTCAGCACTCGGTGGCCCCACTCTAACACATGCTGTGACCCGAGCAACCAAAATGCTCACTGCAACTGCCATGCCAACTGTAGCAACATCAGTTCAGTCTCCATATAGATCAACAAAACTTGTGATAATCGAGAGACTGCTGCTTCTGGCGGAGCGCTACGTGATCACAATAGAGGACTTCTACTCTGTCCCACGAACTATTCTACCTCATGGTGCCTCATTTCATGGACATCTTTTAACTCTTAATGTTACCTACGAGTCTACCAAAGATACCTTCACTGTAGAGGCTCACAGTAATGAGACGATAGGCAGCGTCCGCTGGAAGATAGCCAAACAGCTGTGCTCTCCTGTGGACAACATACAGATATTTACGAACGATAGTCTGCTGACTGTAAATAAAGATCAAAAGCTCCTCCACCAACTGGGGTTCTCTGATGAACAAGTTCTTACCGTGAAGACTTCTGGCAGTGGGACCCCCTCGGGGAGCTCTGCAGATTCCTCCACCAGCTCCAGCAGCAGCAGCAGTGGGGCCTTCAGTTCGTCCTACGCCATGGAACAGGAGAAATCTCTCCCTGGTGTGGTGATGGCACTTGTATGTAATGTGTTTGACATGCTGTACCAACTTGCCAACCTGGAGGAGCCAAGGATAACTCTACGAGTGCGGAAGCTTCTGCTCTTGATACCCACTGACCCAGCCATTCAGGAAGCCCTTGACCAGCTGGATTCTTTAGGCAGAAAGAAAACTTTGCTCTCTGAAACAAGCTCCCAGTCTTCAAAGTCTCCTTCGCTTTCGTCAAAGCAGCAGCATCAGCCAAGTGCCAGCTCCATCTTGGAAAGTTTGTTTCGATCTTTTGCTCCTGGCATGTCAACCTTCAGAGTGCTCTACAACTTGGAAGTCCTAAGCTCCAAACTCATGCCCACGGCTGATGACGACATGGCAAGAAGCTGCGCAAAGTCCTTCTGTGAGAACTTCCTCAAAGCTGGAGGCTTGAGTTTGGTTGTAAATGTCATGCAGAGAGATTCCATCCCATCAGAGGTGGACTATGAGACAAGGCAGGGTGTTTATTCTATCTGTCTACAACTTGCAAGGTTTTTACTTGTTGGACAGACAATGCCAACATCATTAGATGAAGACCTCACCAAAGATGGCATAGAAGCACTTTCTTCCCGTCCATTCCGAAATGTCAGCCGGCAGACGAGCAGACAGATGTCCCTATGTGGGACCCCAGAGAAGTCGTCCTACAGACAGCTGTCAGTGTCAGACAGGTCTTCCATTAGGGTTGAGGAAATCATTCCCGCTGCTCGAGTTGCAATACAA
Peptide sequence:
MCFEWFTKGQHDLESDVQQQLFKEKILKLESYEITMNGFNLFKTFFENVNLCDHRLKRQGAQLYVEKLELVGMDFIWKIAMESPDEEIANEAIQLIINYSYINLNPRLKKDSVSLHKKFIADCYTRLEAASSALGGPTLTHAVTRATKMLTATAMPTVATSVQSPYRSTKLVIIERLLLLAERYVITIEDFYSVPRTILPHGASFHGHLLTLNVTYESTKDTFTVEAHSNETIGSVRWKIAKQLCSPVDNIQIFTNDSLLTVNKDQKLLHQLGFSDEQVLTVKTSGSGTPSGSSADSSTSSSSSSSGAFSSSYAMEQEKSLPGVVMALVCNVFDMLYQLANLEEPRITLRVRKLLLLIPTDPAIQEALDQLDSLGRKKTLLSETSSQSSKSPSLSSKQQHQPSASSILESLFRSFAPGMSTFRVLYNLEVLSSKLMPTADDDMARSCAKSFCENFLKAGGLSLVVNVMQRDSIPSEVDYETRQGVYSICLQLARFLLVGQTMPTSLDEDLTKDGIEALSSRPFRNVSRQTSRQMSLCGTPEKSSYRQLSVSDRSSIRVEEIIPAARVAIQVLDVLWELAHLPTLPSSLIQQALEEHLTILSDAYAVKEAVKRSYIIKCIEDIKRPGEWSSLEKNKKDGFKSSQLNNPQFVWVVPALRQLHEITRSFIKQTYQKQDKSIIQDLKKNFEIVKLVTGSLLACHRLAAAVAGPGGLTGLTLVDGRYTYREYLEAHLKFLAFFLQEATLYLGWNRAKEIWECLVTGQDVCELDREMCFEWFTKGQHDLESDVQQQLFKEKILKLESYEITMNGFNLFKTFFENVNLCDHRLKRQGAQLYVEKLELVGMDFIWKIAMESPDEEIANEAIQLIINYSYINLNPRLKKDSVSLHKKFIADCYTRLEAASSALGGPTLTHAVTRATKMLTATAMPTVATSVQSPYRSTKLVIIERLLLLAERYVITIEDFYSVPRTILPHGASFHGHLLTLNVTYESTKDTFTVEAHSNETIGSVRWKIAKQLCSPVDNIQIFTNDSLLTVNKDQKLLHQLGFSDEQVLTVKTSGSGTPSGSSADSSTSSSSSSSGAFSSSYAMEQEKSLPGVVMALVCNVFDMLYQLANLEEPRITLRVRKLLLLIPTDPAIQEALDQLDSLGRKKTLLSETSSQSSKSPSLSSKQQHQPSASSILESLFRSFAPGMSTFRVLYNLEVLSSKLMPTADDDMARSCAKSFCENFLKAGGLSLVVNVMQRDSIPSEVDYETRQGVYSICLQLARFLLVGQTMPTSLDEDLTKDGIEALSSRPFRNVSRQTSRQMSLCGTPEKSSYRQLSVSDRSSIRVEEIIPAARVAIQ
IRESfinder result
IRESfinder score
0.631571258
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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