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mmu_circUqcc1_318
Basic information of circular RNA
PanCircBase ID:
mmu_circUqcc1_318
mm39_Chr. Position ID:
chr2|155700031|155751345|-
Gene name:
Uqcc1
Transcript:
ENSMUST00000136933.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
8,7,6,5
Exon/intron offsets:
0,28997,43186,51241
Genomic length:
51314
Exon/intron sizes in nt:
78,109,58,73
Flanking exon/introns:
chr2:155693392-155700031|chr2:155751345-155752276
Splice length:
318
Other database IDs:
CIRCpedia: MMU_CIRCpedia_10642, circAtlas: mmu-Uqcc1_0012
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_33906
Human Ortholog IDs:
Mature spliced Sequence:
AAGATCAAGATCGCGGCCCTCCGCATGTACACGAGCTGCGTGGAGAAGACTGACTTCGAGGAGTTCTTTCTGAGGTGTCAGATGCCCGATACATTCAACTCCTGGTTTCTCATAACCCTGCTTCATGTCTGGATGTGTCTAGTCCGAATGAAGCAGGAAGGCCGGACTGGGAAGTACATGTGCCGGATCATAGTTCATTTCATGTGGGAAGATGTGGAGCAGCGCGGCCGCGTCATGGGGGTTAATTCCTATATCCTAAAGAAGAACATGGCCCTCATGACGAACAATTTCTATGCAGCAATCTTGGGATACGATGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGCCCTCATGACGAACAAT
59.67
TGTATCGGGCATCTGACACC
59.54
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATGGCCCTCATGACGAACAA
59.67
TGTATCGGGCATCTGACACC
59.54
144
PCR template sequence:
GCAGCGCGGCCGCGTCATGGGGGTTAATTCCTATATCCTAAAGAAGAACATGGCCCTCATGACGAACAATTTCTATGCAGCAATCTTGGGATACGATGAGAAGATCAAGATCGCGGCCCTCCGCATGTACACGAGCTGCGTGGAGAAGACTGACTTCGAGGAGTTCTTTCTGAGGTGTCAGATGCCCGATACATTCAACT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-382-5p(1), mmu-miR-680(1), mmu-miR-188-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GGGATACGATGAGAAGATCAAGATCG
siRNA sets
ATCTTGATCTTCTCATCGT, TGATCTTCTCATCGTATCC, GATCTTGATCTTCTCATCG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCUQCC1_318_ORF_1
1.2803
0.333481538
0.947984029
612
ORF sequence:
ATGTACACGAGCTGCGTGGAGAAGACTGACTTCGAGGAGTTCTTTCTGAGGTGTCAGATGCCCGATACATTCAACTCCTGGTTTCTCATAACCCTGCTTCATGTCTGGATGTGTCTAGTCCGAATGAAGCAGGAAGGCCGGACTGGGAAGTACATGTGCCGGATCATAGTTCATTTCATGTGGGAAGATGTGGAGCAGCGCGGCCGCGTCATGGGGGTTAATTCCTATATCCTAAAGAAGAACATGGCCCTCATGACGAACAATTTCTATGCAGCAATCTTGGGATACGATGAGAAGATCAAGATCGCGGCCCTCCGCATGTACACGAGCTGCGTGGAGAAGACTGACTTCGAGGAGTTCTTTCTGAGGTGTCAGATGCCCGATACATTCAACTCCTGGTTTCTCATAACCCTGCTTCATGTCTGGATGTGTCTAGTCCGAATGAAGCAGGAAGGCCGGACTGGGAAGTACATGTGCCGGATCATAGTTCATTTCATGTGGGAAGATGTGGAGCAGCGCGGCCGCGTCATGGGGGTTAATTCCTATATCCTAAAGAAGAACATGGCCCTCATGACGAACAATTTCTATGCAGCAATCTTGGGATACGATGAG
Peptide sequence:
MYTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRTGKYMCRIIVHFMWEDVEQRGRVMGVNSYILKKNMALMTNNFYAAILGYDEKIKIAALRMYTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRTGKYMCRIIVHFMWEDVEQRGRVMGVNSYILKKNMALMTNNFYAAILGYDE
IRESfinder result
IRESfinder score
0.313824229
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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